FvH4_7g15870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015689
Physical Location & Seq
Forward (+)
13698866 .. 13700087
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15870.t1

Sequence Viewer

Length: 669 bp
ATGGGTTTTTCATATGGTAGGCTCATCAGCAATGAGATTGGAGACACAAACAGTAGCAGCAGGTTCTGTAATTTCTGTTCAGAACATGGTGGTGGTTACTGTGATATTGCTGCAGAGGCCCCATTTGAGGAGAGGAAGAGATTGGTGGCCATTAGAAATTCATTGAAGGAAGTTGAGAACATGGTCTTGTTCTTGGAGAGATTAGATTCTAGGCAGATGATGGATATGAATGCAGCATTCAACAGTTTGGAAGAAAGCAGACTAAATCTATTAGCAAATGTGACAGAATACAAAGGAAGGGCACTTAATGTGCTCACAGAACTGAATGCATGTTTCGGACACGAAAATGGTGCGCCTTTTGACTGGGATTTGAGAGAGAGATCGGAGAAAAATGTTGAAGCTGCTGGTGCTCATCACAGCAGAAGGTTCCTCCTCATCACTAATTGCATGAGAAAGTTACTACTAATCCCATGGAAGTGGCAACAGAAAGTTGGTATTGCAGTGAAACTAGCTATGTTTGCAATGGCAGCTTATCATATTAGGAAAATGATATGCACAAGCTCAAGAAAAATGATTCCATTTGTAGTTTCAAGAGGAGCAGGAAATAGTATTTCTAGTGTATTGACCATCTCAAAGAGTCCTCTAGAAGTTTTCTGTGCTAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

9.02

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15870
malus_domestica MD01G1075500.v1.1 MD07G1144400.v1.1
prunus_persica Prupe.2G183300_v2.0.a1
pyrus_communis pycom07g14310
rosa_chinensis RchiOBHm_Chr1g0358691
rosa_laevigata RLG00000027935
rosa_multiflora Rmu_sc0001609.1_g000031
rosa_roxburghii Rroxscaffold_4G00297700
rosa_rugosa Rorug01G0264200 Rorug01G0264300
rosa_samantha Rh1AG278700 Rh1BG245400 Rh1CG262300 Rh1DG273700
rosa_wichuraiana Rw1G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 4 cut(s) 166, 241, 398, 591
AluBI AGCT 4 cut(s) 401, 512, 530, 561
AluI AGCT 4 cut(s) 401, 512, 530, 561
Alw21I GWGCWC 2 cut(s) 315, 412
Alw26I GTCTC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 66
AoxI GGCC 2 cut(s) 117, 147
ApeKI GCWGC 5 cut(s) 57, 110, 233, 401, 527
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 315, 412
BbvI GCAGC 5 cut(s) 69, 97, 245, 388, 539
BccI CCATC 2 cut(s) 214, 635
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 5 cut(s) 210, 509, 615, 644, 660
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 5 cut(s) 58, 111, 234, 402, 528
BlsI GCNGC 5 cut(s) 59, 112, 235, 403, 529
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 120, 428
BmrI ACTGGG 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 37, 528
BseDI CCNNGG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 2 cut(s) 37, 528
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 3 cut(s) 143, 422, 609
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 5 cut(s) 69, 97, 245, 388, 539
BshFI GGCC 2 cut(s) 119, 149
BsiHKAI GWGCWC 2 cut(s) 315, 412
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 36
BsmI GAATGC 3 cut(s) 235, 236, 331
BsnI GGCC 2 cut(s) 119, 149
Bsp1286I GDGCHC 3 cut(s) 304, 315, 412
Bsp143I GATC 1 cut(s) 380
Bsp19I CCATGG 1 cut(s) 470
BspANI GGCC 2 cut(s) 119, 149
BspLI GGNNCC 2 cut(s) 120, 428
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 51
BsrDI GCAATG 2 cut(s) 37, 528
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 53, 101, 245
Bst6I CTCTTC 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 4 cut(s) 116, 407, 518, 527
BstNSI RCATGY 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 5 cut(s) 69, 97, 245, 388, 539
BstXI CCANNNNNNTGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 119, 149
BtgI CCRYGG 1 cut(s) 470
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
BveI ACCTGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 118
CviAII CATG 5 cut(s) 86, 181, 330, 448, 471
CviJI RGCY 8 cut(s) 22, 119, 149, 401, 512, 530, 561, 666
CviKI_1 RGCY 8 cut(s) 22, 119, 149, 401, 512, 530, 561, 666
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 5 cut(s) 89, 184, 333, 451, 474
FatI CATG 5 cut(s) 85, 180, 329, 447, 470
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 58, 111, 234, 402, 528
Fsp4HI GCNGC 5 cut(s) 58, 111, 234, 402, 528
FspBI CTAG 5 cut(s) 210, 509, 615, 644, 660
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 58, 111, 234, 402, 528
HaeIII GGCC 2 cut(s) 119, 149
HhaI GCGC 1 cut(s) 355
Hin1II CATG 5 cut(s) 89, 184, 333, 451, 474
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 3 cut(s) 206, 574, 637
Hpy188I TCNGA 3 cut(s) 82, 338, 385
Hpy188III TCNNGA 3 cut(s) 564, 591, 644
HpyAV CCTTC 3 cut(s) 160, 291, 417
HpyCH4III ACNGT 3 cut(s) 53, 101, 245
HpyCH4V TGCA 7 cut(s) 113, 233, 329, 447, 500, 521, 555
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 407, 518, 527
Hsp92II CATG 5 cut(s) 89, 184, 333, 451, 474
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 596
LpnPI CCDG 4 cut(s) 46, 349, 390, 585
Lsp1109I GCAGC 5 cut(s) 69, 97, 245, 388, 539
MaeI CTAG 5 cut(s) 210, 509, 615, 644, 660
MaeIII GTNAC 3 cut(s) 95, 280, 456
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 2 cut(s) 148, 263
MhlI GDGCHC 3 cut(s) 304, 315, 412
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 3 cut(s) 70, 157, 442
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 646
MnlI CCTC 8 cut(s) 109, 121, 126, 440, 443, 587, 651, 656
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 331
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 3 cut(s) 90, 345, 475
Msp20I TGGCCA 1 cut(s) 149
Mva1269I GAATGC 3 cut(s) 235, 236, 331
MwoI GCNNNNNNNGC 4 cut(s) 116, 407, 518, 527
NcoI CCATGG 1 cut(s) 470
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 380
NlaIII CATG 5 cut(s) 89, 184, 333, 451, 474
NlaIV GGNNCC 2 cut(s) 120, 428
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 333
PctI GAATGC 3 cut(s) 235, 236, 331
PfeI GAWTC 2 cut(s) 206, 574
PkrI GCNGC 5 cut(s) 59, 112, 235, 403, 529
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
PspN4I GGNNCC 2 cut(s) 120, 428
PspPI GGNCC 1 cut(s) 118
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 66
RseI CAYNNNNRTG 3 cut(s) 90, 345, 475
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 5 cut(s) 58, 111, 234, 402, 528
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 646
SduI GDGCHC 3 cut(s) 304, 315, 412
SetI ASST 6 cut(s) 65, 403, 428, 514, 532, 563
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 3 cut(s) 90, 345, 475
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 3 cut(s) 70, 157, 442
SspMI CTAG 5 cut(s) 210, 509, 615, 644, 660
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 3 cut(s) 53, 101, 245
TasI AATT 3 cut(s) 70, 157, 442
TfiI GAWTC 2 cut(s) 206, 574
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 5 cut(s) 57, 110, 233, 401, 527
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 150, 242
TspRI CASTG 1 cut(s) 507
XapI RAATTY 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 1 cut(s) 333
XspI CTAG 5 cut(s) 210, 509, 615, 644, 660
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.