Rorug01G0264300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015689
Physical Location & Seq
Forward (+)
37522995 .. 37523721
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0264300.1

Sequence Viewer

Length: 585 bp
ATGGCAAGGCTGAAAGATCAGTCATGGCAAAGGAGGATTAGAATCTGTCCTGAGGGTTGTGCGACGAGCGAGGTAGTGGCCTTGAGGCAGGATATCGGCGACGTGAGTGCTCATCTCCGGTCTGTGGTCTCCAAGGCAAGAACGACTGCAGCGGGCGGTCAGAACACAGCGGGTCGTGGCTTGGTGGTCGGCGGTGACGAGCTACCCTCTCATGCAAGGGTGTCCACATCAATTCGGTGGCCCAAAGCAAGATGGAGGCCCAACTTGGTTTGGTACCCTAGCTTGTCTTGGACAGATCTGGTCTCGGGCTCTAGTGGGCTAACTAAGGCTGCAGATATTGGAAGTTGGAATTGGGCCCTTTCTAGGTTGTTTTTCGCTGCTGCAATGTGGGCTAACGTGGGGCCCACATATTTTGGGTTTCGGATTTGGGATCCCAGAGGATTATTTCAAATAACTATGCTTATGTGGTTTTTTAGCCTGCAGGTTATGATGTTTCTTTTACATCTTGATAATGGAAGCTTCTGGAGCACCGCAATTGAGCGCATTGGCAAAGGAAGTTTTCGCACAAAAATGATCTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.74

Weight (kDa)

10.83

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15870
malus_domestica MD01G1075500.v1.1 MD07G1144400.v1.1
prunus_persica Prupe.2G183300_v2.0.a1
pyrus_communis pycom07g14310
rosa_chinensis RchiOBHm_Chr1g0358691
rosa_laevigata RLG00000027935
rosa_multiflora Rmu_sc0001609.1_g000031
rosa_roxburghii Rroxscaffold_4G00297700
rosa_rugosa Rorug01G0264200 Rorug01G0264300
rosa_samantha Rh1AG278700 Rh1BG245400 Rh1CG262300 Rh1DG273700
rosa_wichuraiana Rw1G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 472
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 5 cut(s) 152, 156, 170, 192, 531
AclWI GGATC 2 cut(s) 425, 438
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 124, 363
AgsI TTSAA 1 cut(s) 449
AjiI CACGTC 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
AluBI AGCT 3 cut(s) 202, 282, 519
AluI AGCT 3 cut(s) 202, 282, 519
Alw21I GWGCWC 2 cut(s) 112, 530
Alw26I GTCTC 2 cut(s) 133, 307
AlwI GGATC 2 cut(s) 425, 438
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 5 cut(s) 78, 239, 257, 354, 401
ApaI GGGCCC 2 cut(s) 358, 405
ApeKI GCWGC 4 cut(s) 149, 329, 377, 380
Asp718I GGTACC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 6 cut(s) 240, 258, 354, 355, 401, 402
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 2 cut(s) 358, 405
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 3 cut(s) 311, 358, 405
Bbv12I GWGCWC 2 cut(s) 112, 530
BbvI GCAGC 4 cut(s) 161, 316, 364, 367
BccI CCATC 1 cut(s) 246
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 2 cut(s) 133, 307
BfaI CTAG 3 cut(s) 279, 312, 363
BfmI CTRYAG 3 cut(s) 147, 330, 479
BfuAI ACCTGC 1 cut(s) 472
BglII AGATCT 1 cut(s) 295
BisI GCNGC 4 cut(s) 150, 330, 378, 381
BlsI GCNGC 4 cut(s) 151, 331, 379, 382
BmeT110I CYCGRG 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 6 cut(s) 240, 258, 354, 355, 401, 402
BmiI GGNNCC 5 cut(s) 275, 356, 402, 403, 432
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 41
BsaI GGTCTC 2 cut(s) 133, 307
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 363
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 124, 363
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 42
BseSI GKGCMC 2 cut(s) 358, 405
BseXI GCAGC 4 cut(s) 161, 316, 364, 367
BshFI GGCC 5 cut(s) 80, 241, 259, 356, 403
BshNI GGYRCC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 112, 530
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 124, 363
BsmAI GTCTC 2 cut(s) 133, 307
BsnI GGCC 5 cut(s) 80, 241, 259, 356, 403
Bso31I GGTCTC 2 cut(s) 133, 307
BsoBI CYCGRG 1 cut(s) 304
Bsp120I GGGCCC 2 cut(s) 354, 401
Bsp1286I GDGCHC 5 cut(s) 112, 311, 358, 405, 530
Bsp143I GATC 4 cut(s) 16, 295, 430, 573
BspACI CCGC 5 cut(s) 152, 156, 170, 192, 531
BspANI GGCC 5 cut(s) 80, 241, 259, 356, 403
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 5 cut(s) 275, 356, 402, 403, 432
BspMAI CTGCAG 3 cut(s) 151, 334, 483
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 2 cut(s) 133, 307
BsrDI GCAATG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 16, 295, 430, 573
BssT1I CCWWGG 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 154, 479
BstDEI CTNAG 2 cut(s) 51, 324
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 4 cut(s) 19, 298, 433, 576
BstMAI GTCTC 2 cut(s) 133, 307
BstMBI GATC 4 cut(s) 16, 295, 430, 573
BstMWI GCNNNNNNNGC 2 cut(s) 389, 525
BstSFI CTRYAG 3 cut(s) 147, 330, 479
BstSLI GKGCMC 2 cut(s) 358, 405
BstV1I GCAGC 4 cut(s) 161, 316, 364, 367
BstX2I RGATCY 2 cut(s) 295, 430
BstYI RGATCY 2 cut(s) 295, 430
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 5 cut(s) 80, 241, 259, 356, 403
BtrI CACGTC 1 cut(s) 103
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 154, 479
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 6 cut(s) 240, 258, 354, 355, 401, 402
Csp6I GTAC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 24, 212
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 2 cut(s) 51, 324
DpnI GATC 4 cut(s) 18, 297, 432, 575
DpnII GATC 4 cut(s) 16, 295, 430, 573
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 3 cut(s) 311, 358, 405
Eco31I GGTCTC 2 cut(s) 133, 307
Eco32I GATATC 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 304
EcoO109I RGGNCCY 2 cut(s) 355, 401
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 3 cut(s) 311, 358, 405
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 27, 215
FaiI YATR 6 cut(s) 25, 213, 409, 458, 464, 488
FatI CATG 2 cut(s) 23, 211
FauI CCCGC 2 cut(s) 145, 163
Fnu4HI GCNGC 4 cut(s) 150, 330, 378, 381
FriOI GRGCYC 3 cut(s) 311, 358, 405
Fsp4HI GCNGC 4 cut(s) 150, 330, 378, 381
FspBI CTAG 3 cut(s) 279, 312, 363
GlaI GCGC 1 cut(s) 542
GluI GCNGC 4 cut(s) 150, 330, 378, 381
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 5 cut(s) 80, 241, 259, 356, 403
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 543
Hin1II CATG 2 cut(s) 27, 215
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 162, 423
Hpy188III TCNNGA 3 cut(s) 50, 506, 523
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 2 cut(s) 67, 104
HpyCH4IV ACGT 2 cut(s) 102, 396
HpyCH4V TGCA 5 cut(s) 149, 215, 332, 383, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 525
HpyF3I CTNAG 2 cut(s) 51, 324
HpySE526I ACGT 2 cut(s) 102, 396
Hsp92II CATG 2 cut(s) 27, 215
HspAI GCGC 1 cut(s) 541
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 16, 295, 430, 573
LmnI GCTCC 1 cut(s) 525
LpnPI CCDG 8 cut(s) 63, 74, 131, 284, 448, 467, 491, 508
Lsp1109I GCAGC 4 cut(s) 161, 316, 364, 367
MaeI CTAG 3 cut(s) 279, 312, 363
MaeII ACGT 2 cut(s) 102, 396
MaeIII GTNAC 1 cut(s) 194
MalI GATC 4 cut(s) 18, 297, 432, 575
MboI GATC 4 cut(s) 16, 295, 430, 573
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 2 cut(s) 295, 430
MhlI GDGCHC 5 cut(s) 112, 311, 358, 405, 530
MluCI AATT 3 cut(s) 231, 349, 534
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 7 cut(s) 27, 46, 64, 78, 217, 249, 431
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 152, 170
MspI CCGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 389, 525
NdeII GATC 4 cut(s) 16, 295, 430, 573
NlaIII CATG 2 cut(s) 27, 215
NlaIV GGNNCC 5 cut(s) 275, 356, 402, 403, 432
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 4 cut(s) 151, 331, 379, 382
PspN4I GGNNCC 5 cut(s) 275, 356, 402, 403, 432
PspOMI GGGCCC 2 cut(s) 354, 401
PspPI GGNCC 6 cut(s) 240, 258, 354, 355, 401, 402
PstI CTGCAG 3 cut(s) 151, 334, 483
PsuI RGATCY 2 cut(s) 295, 430
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 569
SatI GCNGC 4 cut(s) 150, 330, 378, 381
Sau3AI GATC 4 cut(s) 16, 295, 430, 573
Sau96I GGNCC 6 cut(s) 240, 258, 354, 355, 401, 402
SbfI CCTGCAGG 1 cut(s) 483
SdaI CCTGCAGG 1 cut(s) 483
SduI GDGCHC 5 cut(s) 112, 311, 358, 405, 530
SetI ASST 8 cut(s) 75, 105, 204, 284, 368, 399, 486, 521
SfcI CTRYAG 3 cut(s) 147, 330, 479
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse8387I CCTGCAGG 1 cut(s) 483
Sse9I AATT 3 cut(s) 231, 349, 534
SsiI CCGC 5 cut(s) 152, 156, 170, 192, 531
SspMI CTAG 3 cut(s) 279, 312, 363
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 2 cut(s) 105, 399
TasI AATT 3 cut(s) 231, 349, 534
TfiI GAWTC 1 cut(s) 42
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 4 cut(s) 149, 329, 377, 380
Tsp45I GTSAC 1 cut(s) 194
XspI CTAG 3 cut(s) 279, 312, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.