MD07G1144400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015689
Physical Location & Seq
Forward (+)
21018908 .. 21020416
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1144400.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGGATTTCATGGTAGGCTCAGCAGCAAAGAAACGGGGGCAAATAGCAGGTTGTGTAGTTTCTGTTCAGAAAATGGGTGTTACTGTGACATTGCAGAGGCCCCATTTGAGGAGAGGAACAGACTGATTGCAATTAAAGATCAAGTGAAGGAAGTTGAGAACAAATTCATGTTTTTACAGAGAATGAGTTCTTGGCAGCAGATGGATAGGCAGGCAGCATTCAACAGTTTGGAAGAAAGCAGGCTAAATCTAGTAGCAAAGGTGACAGAATATAAAGGAAGAAGGGAACTTGATGTGGTGACAGAACTGAATGCATGTTTTGGCAGTGAAAATAATGTCCCTTTTAATTGGGATTTTGGAGGGAGACTGATTAAAAAGAATGAACCTGCAGGTGGTTTTCACAGCAGAAGTTTTCTCACTAACTGCATAAGAAAGTTGCTCGTCTCATGGAAGTGGCAAAAGGTTTATGGTATTGCAGTGAAACTAGCAATGGTTTCTGTGAGCATTTCTTCTGTAATTGCTGCTTACAGTACCAGGCAATTATTATGCACCAGCTCAAGAAAGATGATTCCATTTTTGAGTTTCAAAGATGCAGGAAAAAGTAGTAGTCTATTAACCTTCTCAAAGAACCCTCTTGATGTCTTCTTTGGTAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.77

Weight (kDa)

9.39

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15870
malus_domestica MD01G1075500.v1.1 MD07G1144400.v1.1
prunus_persica Prupe.2G183300_v2.0.a1
pyrus_communis pycom07g14310
rosa_chinensis RchiOBHm_Chr1g0358691
rosa_laevigata RLG00000027935
rosa_multiflora Rmu_sc0001609.1_g000031
rosa_roxburghii Rroxscaffold_4G00297700
rosa_rugosa Rorug01G0264200 Rorug01G0264300
rosa_samantha Rh1AG278700 Rh1BG245400 Rh1CG262300 Rh1DG273700
rosa_wichuraiana Rw1G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 3 cut(s) 39, 380, 394
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 109, 392
AgsI TTSAA 2 cut(s) 223, 586
AjnI CCWGG 1 cut(s) 533
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 1 cut(s) 555
AluI AGCT 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 358, 448
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 4 cut(s) 24, 196, 215, 521
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 2 cut(s) 164, 187
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 274, 310
BbsI GAAGAC 1 cut(s) 634
BbvI GCAGC 4 cut(s) 36, 208, 227, 508
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 358, 448
BfaI CTAG 2 cut(s) 251, 485
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 3 cut(s) 39, 380, 394
BisI GCNGC 4 cut(s) 25, 197, 216, 522
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 4 cut(s) 26, 198, 217, 523
Bme1390I CCNGG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 541
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 392
Bse3DI GCAATG 2 cut(s) 90, 495
BseBI CCWGG 1 cut(s) 535
BseLI CCNNNNNNNGG 2 cut(s) 109, 392
BseMI GCAATG 2 cut(s) 90, 495
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 4 cut(s) 36, 208, 227, 508
BshFI GGCC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 109, 392
BsmAI GTCTC 2 cut(s) 358, 448
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 218, 316
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 391
BspMI ACCTGC 3 cut(s) 39, 380, 394
BsrDI GCAATG 2 cut(s) 90, 495
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 3 cut(s) 86, 227, 530
BstC8I GCNNGC 2 cut(s) 213, 242
BstDEI CTNAG 1 cut(s) 20
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 358, 448
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 533
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 4 cut(s) 36, 208, 227, 508
BstV2I GAAGAC 1 cut(s) 634
BsuRI GGCC 1 cut(s) 101
BtsI GCAGTG 2 cut(s) 331, 483
BtsIMutI CAGTG 2 cut(s) 331, 483
BveI ACCTGC 3 cut(s) 39, 380, 394
Cac8I GCNNGC 2 cut(s) 213, 242
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 531
CviAII CATG 4 cut(s) 11, 169, 315, 447
CviJI RGCY 4 cut(s) 19, 101, 244, 555
CviKI_1 RGCY 4 cut(s) 19, 101, 244, 555
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 4 cut(s) 14, 172, 318, 450
FaiI YATR 8 cut(s) 12, 170, 273, 316, 428, 448, 468, 547
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 10, 168, 314, 446
Fnu4HI GCNGC 4 cut(s) 25, 197, 216, 522
Fsp4HI GCNGC 4 cut(s) 25, 197, 216, 522
FspBI CTAG 2 cut(s) 251, 485
GluI GCNGC 4 cut(s) 25, 197, 216, 522
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 4 cut(s) 14, 172, 318, 450
HinfI GANTC 1 cut(s) 568
HphI GGTGA 2 cut(s) 274, 310
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 558, 635
HpyAV CCTTC 3 cut(s) 142, 276, 628
HpyCH4III ACNGT 3 cut(s) 86, 227, 530
HpyCH4V TGCA 8 cut(s) 95, 131, 314, 389, 426, 476, 549, 593
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 4 cut(s) 14, 172, 318, 450
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 34, 197, 226, 375, 399, 520, 547, 565, 579
Lsp1109I GCAGC 4 cut(s) 36, 208, 227, 508
LweI GCATC 1 cut(s) 580
MaeI CTAG 2 cut(s) 251, 485
MaeIII GTNAC 4 cut(s) 80, 86, 262, 298
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 245, 291, 501, 634
MluCI AATT 5 cut(s) 132, 164, 346, 516, 539
MnlI CCTC 5 cut(s) 91, 103, 108, 353, 642
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 2 cut(s) 164, 187
MseI TTAA 4 cut(s) 135, 345, 372, 614
MslI CAYNNNNRTG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 535
Mva1269I GAATGC 2 cut(s) 218, 316
MvaI CCWGG 1 cut(s) 535
NdeII GATC 1 cut(s) 139
NlaIII CATG 4 cut(s) 14, 172, 318, 450
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 3 cut(s) 86, 262, 298
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 318
PaqCI CACCTGC 1 cut(s) 380
PctI GAATGC 2 cut(s) 218, 316
PdmI GAANNNNTTC 2 cut(s) 164, 187
PfeI GAWTC 1 cut(s) 568
PkrI GCNGC 4 cut(s) 26, 198, 217, 523
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PstI CTGCAG 1 cut(s) 391
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 4 cut(s) 135, 345, 372, 614
SatI GCNGC 4 cut(s) 25, 197, 216, 522
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 100
SbfI CCTGCAGG 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 535
SdaI CCTGCAGG 1 cut(s) 391
SetI ASST 7 cut(s) 53, 264, 388, 394, 465, 557, 620
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse8387I CCTGCAGG 1 cut(s) 391
Sse9I AATT 5 cut(s) 132, 164, 346, 516, 539
SspMI CTAG 2 cut(s) 251, 485
StyD4I CCNGG 1 cut(s) 533
TaaI ACNGT 3 cut(s) 86, 227, 530
TasI AATT 5 cut(s) 132, 164, 346, 516, 539
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 4 cut(s) 135, 345, 372, 614
Tru9I TTAA 4 cut(s) 135, 345, 372, 614
TscAI CASTG 2 cut(s) 331, 483
TseFI GTSAC 3 cut(s) 86, 262, 298
TseI GCWGC 4 cut(s) 24, 196, 215, 521
Tsp45I GTSAC 3 cut(s) 86, 262, 298
TspDTI ATGAA 2 cut(s) 157, 396
TspRI CASTG 2 cut(s) 331, 483
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 164, 187
XspI CTAG 2 cut(s) 251, 485
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.