Prupe.2G183300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015689
Physical Location & Seq
Forward (+)
22545579 .. 22546717
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G183300.1

Sequence Viewer

Length: 699 bp
ATGTCTTTGTTTGAGGGAGTTAAGAACGACCTGCAGTTTTCCCATCAAGACAGCATGGGCTTTCATGGCTGGCTCAACAATGAAACTAGAGAAAATAGCAGGTCTTGTAAATTCTGCTCAGAACCTGCTGGTTACTGTGATTTTGCAGAGGCCCCATTTGAGGAGAGGAAGAGGTTGGTTGACATTAGAAACTCAGTGAAGGAAGTTGAGAACATGTTCATGGTTTTACAGAGAATGGGTTCTTGGCAGCAGATGGACAGGCATGCAGCCTTCACCAATTTGGAAGAAAGCAGAGTAAGTCTATCAGCAAAGGTGGCAGAACATAAAGGAAGGGCACTTGATGTGGTGACAGAATTGAAAGCATGTTTTGGCAATGAAAACAATGTCCCTTTCAATTGGGATTTTAAAGAGACATTGAAAGAGAAAGCTGAACCTGCTGCTCACAGCAGAAGGTTTCTCACTGATTGCATTAGAAAGTTGTTCATCTCAAGGAAGTGGCAGAGAGTTGGTTTTGCTGTGAAACTGGTCATGGTGTCTGCTAGCATTTTCTCTCTAATGGCAGCTTATCATATCAGGCAATTACTATACAACAGCGCCAGAAAAAGGATCCCATTTGTGGCTTCCAAAGACGCAGGAAAAATTGCCAGTCTATTAACCATCTCAAAGAGCCCTCTTGATGTCTTTTGTGGCAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.56

Weight (kDa)

9.26

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15870
malus_domestica MD01G1075500.v1.1 MD07G1144400.v1.1
prunus_persica Prupe.2G183300_v2.0.a1
pyrus_communis pycom07g14310
rosa_chinensis RchiOBHm_Chr1g0358691
rosa_laevigata RLG00000027935
rosa_multiflora Rmu_sc0001609.1_g000031
rosa_roxburghii Rroxscaffold_4G00297700
rosa_rugosa Rorug01G0264200 Rorug01G0264300
rosa_samantha Rh1AG278700 Rh1BG245400 Rh1CG262300 Rh1DG273700
rosa_wichuraiana Rw1G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 39, 90, 133, 442
AclWI GGATC 2 cut(s) 601, 614
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 160, 603, 616
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 358, 394, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 2 cut(s) 428, 563
AluI AGCT 2 cut(s) 428, 563
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 2 cut(s) 601, 614
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 4 cut(s) 247, 266, 437, 560
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 2 cut(s) 215, 238
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 265, 358
AsuNHI GCTAGC 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 606
BanII GRGCYC 1 cut(s) 671
BbvI GCAGC 4 cut(s) 259, 278, 424, 572
BccI CCATC 3 cut(s) 51, 247, 665
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 2 cut(s) 87, 540
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 597
BfuAI ACCTGC 4 cut(s) 39, 90, 133, 442
BisI GCNGC 4 cut(s) 248, 267, 438, 561
BlsI GCNGC 4 cut(s) 249, 268, 439, 562
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 153, 608
BmtI GCTAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 603, 616
Bse1I ACTGG 2 cut(s) 528, 645
Bse3DI GCAATG 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 160, 603, 616
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 132, 207
BseNI ACTGG 2 cut(s) 528, 645
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 4 cut(s) 259, 278, 424, 572
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 160, 603, 616
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 337, 671
Bsp143I GATC 1 cut(s) 606
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 131, 206
BspLI GGNNCC 2 cut(s) 153, 608
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 4 cut(s) 39, 90, 133, 442
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 2 cut(s) 601, 614
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 2 cut(s) 528, 645
BssMI GATC 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 71, 264, 541
BstDEI CTNAG 2 cut(s) 118, 193
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 1 cut(s) 609
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 606
BstMWI GCNNNNNNNGC 3 cut(s) 66, 314, 434
BstNSI RCATGY 3 cut(s) 217, 266, 366
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 259, 278, 424, 572
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 201, 459
BveI ACCTGC 4 cut(s) 39, 90, 133, 442
Cac8I GCNNGC 3 cut(s) 71, 264, 541
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 638
CviAII CATG 7 cut(s) 55, 65, 214, 220, 263, 363, 529
CviJI RGCY 9 cut(s) 60, 69, 73, 152, 269, 428, 563, 620, 669
CviKI_1 RGCY 9 cut(s) 60, 69, 73, 152, 269, 428, 563, 620, 669
DdeI CTNAG 2 cut(s) 118, 193
DpnI GATC 1 cut(s) 608
DpnII GATC 1 cut(s) 606
DraI TTTAAA 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 671
FaeI CATG 7 cut(s) 58, 68, 217, 223, 266, 366, 532
FaqI GGGAC 1 cut(s) 371
FatI CATG 7 cut(s) 54, 64, 213, 219, 262, 362, 528
Fnu4HI GCNGC 4 cut(s) 248, 267, 438, 561
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 4 cut(s) 248, 267, 438, 561
FspBI CTAG 2 cut(s) 87, 540
GlaI GCGC 1 cut(s) 595
GluI GCNGC 4 cut(s) 248, 267, 438, 561
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 1 cut(s) 152
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 596
Hin1II CATG 7 cut(s) 58, 68, 217, 223, 266, 366, 532
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HphI GGTGA 2 cut(s) 265, 358
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 47, 674
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 193, 280, 324, 444
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 34, 146, 266, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 314, 434
HpyF3I CTNAG 2 cut(s) 118, 193
Hsp92II CATG 7 cut(s) 58, 68, 217, 223, 266, 366, 532
HspAI GCGC 1 cut(s) 594
Kzo9I GATC 1 cut(s) 606
Lsp1109I GCAGC 4 cut(s) 259, 278, 424, 572
MaeI CTAG 2 cut(s) 87, 540
MaeIII GTNAC 2 cut(s) 131, 346
MalI GATC 1 cut(s) 608
MboI GATC 1 cut(s) 606
MboII GAAGA 2 cut(s) 181, 296
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 2 cut(s) 337, 671
MluCI AATT 6 cut(s) 110, 277, 353, 394, 578, 639
MnlI CCTC 6 cut(s) 7, 142, 154, 159, 165, 681
MroXI GAANNNNTTC 2 cut(s) 215, 238
MseI TTAA 3 cut(s) 21, 405, 653
MslI CAYNNNNRTG 1 cut(s) 218
MunI CAATTG 1 cut(s) 394
MwoI GCNNNNNNNGC 3 cut(s) 66, 314, 434
NdeII GATC 1 cut(s) 606
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 7 cut(s) 58, 68, 217, 223, 266, 366, 532
NlaIV GGNNCC 2 cut(s) 153, 608
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 3 cut(s) 217, 266, 366
PaeI GCATGC 1 cut(s) 266
PciI ACATGT 1 cut(s) 213
PdmI GAANNNNTTC 2 cut(s) 215, 238
PkrI GCNGC 4 cut(s) 249, 268, 439, 562
PscI ACATGT 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 153, 608
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 21, 405, 653
SatI GCNGC 4 cut(s) 248, 267, 438, 561
Sau3AI GATC 1 cut(s) 606
Sau96I GGNCC 1 cut(s) 151
SduI GDGCHC 2 cut(s) 337, 671
SetI ASST 9 cut(s) 33, 104, 127, 176, 315, 430, 436, 455, 565
SfcI CTRYAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SphI GCATGC 1 cut(s) 266
Sse9I AATT 6 cut(s) 110, 277, 353, 394, 578, 639
SspMI CTAG 2 cut(s) 87, 540
TaaI ACNGT 1 cut(s) 137
TasI AATT 6 cut(s) 110, 277, 353, 394, 578, 639
Tru1I TTAA 3 cut(s) 21, 405, 653
Tru9I TTAA 3 cut(s) 21, 405, 653
TscAI CASTG 2 cut(s) 201, 466
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 247, 266, 437, 560
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 5 cut(s) 53, 96, 208, 390, 472
TspRI CASTG 2 cut(s) 201, 466
XapI RAATTY 1 cut(s) 110
XceI RCATGY 3 cut(s) 217, 266, 366
XmnI GAANNNNTTC 2 cut(s) 215, 238
XspI CTAG 2 cut(s) 87, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.