Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015689

Physical Location & Seq

Genomic Coordinates Forward (+)

51113666 .. 51114988

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTTTTGCATATGGTAGGCTCATCAGCAATGAGATTGGAGACACAAACAGTAGCAGCAGGTTCTGTAATTTCTGTTCAGAACATGGTGGTGGCTACTGTGATATTGCTGCAGAGGCCCCATTTGAGGAGAGGAAGAGATTGGTGGCCATTAGAAATTCATTGAAGGAAGTTGAGAACATGGTCTTGTTCTTGGAGAGATTAGATTCTAGGCAGATGATGGATATGAATGCAGCATTCAACAGTTTGGAAGAAAGCAGACTAAATCTATTAGCAAATGTGACAGAATATAAAGGAAGGGCACTTGATGTTCTGTCAGAACTGAATGCACGTTTCGGACTCCAAAATGGTGCGCCTTTTGATTGGGATTTGAGAGAGGGATTGAAGAAAAATGTTGAACCTTCTGGTGCTCATCACAGCAGAAGGTTCCTCATCACTAATTGCATGAGAAAGTTACTACTAATCCCATGGAAGTGGCAAAAGAAAGTTGGCATTGCAGTGAAACTAGCTATGTCTGCAATGGCAGCTTATCATATCAAGAAATTGATATGCACAAGCTCAAGAAAAAGGATTCCATTAGTCGTTTCAAGAGAAGCAGGGAAAAGTAGTAGTGTATTGACAATCTCAAAGAACCCTCTAGATGTCTTCTGTGCTAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.73

Weight (kDa)

9.48

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15870
malus_domestica	MD01G1075500.v1.1 MD07G1144400.v1.1
prunus_persica	Prupe.2G183300_v2.0.a1
pyrus_communis	pycom07g14310
rosa_chinensis	RchiOBHm_Chr1g0358691
rosa_laevigata	RLG00000027935
rosa_multiflora	Rmu_sc0001609.1_g000031
rosa_roxburghii	Rroxscaffold_4G00297700
rosa_rugosa	Rorug01G0264200 Rorug01G0264300
rosa_samantha	Rh1AG278700 Rh1BG245400 Rh1CG262300 Rh1DG273700
rosa_wichuraiana	Rw1G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	5 cut(s)	166, 241, 385, 398, 588
AluBI	AGCT	3 cut(s)	509, 527, 558
AluI	AGCT	3 cut(s)	509, 527, 558
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	2 cut(s)	117, 147
ApeKI	GCWGC	4 cut(s)	57, 110, 233, 524
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	69, 97, 245, 536
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	4 cut(s)	210, 506, 638, 654
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	4 cut(s)	58, 111, 234, 525
BlsI	GCNGC	4 cut(s)	59, 112, 235, 526
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	120, 428
BpiI	GAAGAC	1 cut(s)	637
BpuEI	CTTGAG	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	3 cut(s)	37, 492, 525
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	3 cut(s)	37, 492, 525
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	69, 97, 245, 536
BshFI	GGCC	2 cut(s)	119, 149
BsiHKAI	GWGCWC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	36
BsmI	GAATGC	3 cut(s)	235, 236, 331
BsnI	GGCC	2 cut(s)	119, 149
Bsp1286I	GDGCHC	2 cut(s)	304, 412
Bsp19I	CCATGG	1 cut(s)	467
BspANI	GGCC	2 cut(s)	119, 149
BspLI	GGNNCC	2 cut(s)	120, 428
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	51
BsrDI	GCAATG	3 cut(s)	37, 492, 525
BssECI	CCNNGG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	53, 101, 245
Bst6I	CTCTTC	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 515, 524
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	4 cut(s)	69, 97, 245, 536
BstV2I	GAAGAC	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	119, 149
BtgI	CCRYGG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	4 cut(s)	86, 181, 445, 468
CviJI	RGCY	8 cut(s)	22, 96, 119, 149, 509, 527, 558, 660
CviKI_1	RGCY	8 cut(s)	22, 96, 119, 149, 509, 527, 558, 660
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	89, 184, 448, 471
FatI	CATG	4 cut(s)	85, 180, 444, 467
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	58, 111, 234, 525
Fsp4HI	GCNGC	4 cut(s)	58, 111, 234, 525
FspBI	CTAG	4 cut(s)	210, 506, 638, 654
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	58, 111, 234, 525
HaeIII	GGCC	2 cut(s)	119, 149
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	89, 184, 448, 471
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	3 cut(s)	206, 339, 571
Hpy188I	TCNGA	3 cut(s)	82, 319, 338
Hpy188III	TCNNGA	4 cut(s)	538, 561, 588, 638
HpyAV	CCTTC	4 cut(s)	160, 291, 411, 417
HpyCH4III	ACNGT	3 cut(s)	53, 101, 245
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	8 cut(s)	11, 113, 233, 329, 444, 497, 518, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 515, 524
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	89, 184, 448, 471
HspAI	GCGC	1 cut(s)	353
LpnPI	CCDG	3 cut(s)	46, 390, 582
Lsp1109I	GCAGC	4 cut(s)	69, 97, 245, 536
MaeI	CTAG	4 cut(s)	210, 506, 638, 654
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	280, 453
MboII	GAAGA	4 cut(s)	148, 263, 397, 637
MhlI	GDGCHC	2 cut(s)	304, 412
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	4 cut(s)	70, 157, 439, 542
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	333
MnlI	CCTC	7 cut(s)	109, 121, 126, 370, 440, 645, 650
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	3 cut(s)	90, 472, 497
Msp20I	TGGCCA	1 cut(s)	149
Mva1269I	GAATGC	3 cut(s)	235, 236, 331
MwoI	GCNNNNNNNGC	3 cut(s)	116, 515, 524
NcoI	CCATGG	1 cut(s)	467
NdeI	CATATG	1 cut(s)	13
NlaIII	CATG	4 cut(s)	89, 184, 448, 471
NlaIV	GGNNCC	2 cut(s)	120, 428
NmuCI	GTSAC	1 cut(s)	280
PctI	GAATGC	3 cut(s)	235, 236, 331
PfeI	GAWTC	2 cut(s)	206, 571
PkrI	GCNGC	4 cut(s)	59, 112, 235, 526
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	120, 428
PspPI	GGNCC	1 cut(s)	118
PsrI	GAACNNNNNNTAC	2 cut(s)	61, 93
PstI	CTGCAG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	66
RseI	CAYNNNNRTG	3 cut(s)	90, 472, 497
SatI	GCNGC	4 cut(s)	58, 111, 234, 525
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	304, 412
SetI	ASST	7 cut(s)	65, 334, 403, 428, 511, 529, 560
SfcI	CTRYAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	3 cut(s)	90, 472, 497
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	4 cut(s)	70, 157, 439, 542
SspMI	CTAG	4 cut(s)	210, 506, 638, 654
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	53, 101, 245
TaiI	ACGT	1 cut(s)	334
TasI	AATT	4 cut(s)	70, 157, 439, 542
TfiI	GAWTC	2 cut(s)	206, 571
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	57, 110, 233, 524
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	150, 242
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	637
XspI	CTAG	4 cut(s)	210, 506, 638, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.