FvH4_7g17310

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017362
Physical Location & Seq
Reverse (-)
14736826 .. 14740972
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17310.t1

Sequence Viewer

Length: 891 bp
ATGAACGACCTCTCAAACGCGGTTCTGAGAGGCCACCATACTAGCACTCCCTTCAAGCCCATACCCTCCCTTGTCCTCTACATTCTCATACCCATCTTCCTTTTAGGCCTCTCTGTCTCCATCTTCATTCTCATTGCCGTCCACAACGCCCTCTTCTTCGTCTTCTTCCTTTTGCTCTCTGCTCTTGTCCTCGCTTTCGTTCTCTGGAACACTCGTCATTGGGCCACCCAATCTGCCGTCTTGTTCTTTCTCAACTCTCTTCCTGACTCTGACCTTCGTGTGGCTCAGCATGGAGACCTGGTCAAGATCACTGGGCTTGCCTCATGCGGGAGTCTCTCCCTGGAATCTTCATATGAAAAGGCTACTAGATGTGTGTATGCCTCTACTCTTTTATATGAATACAAGGGATTAACTCTACACCCTAGAAATGCCAAGAGATCATGCTTCCAGTGGCATTTAGAATATTGTGAGAGATTCTCAACAGACTTTTACTTGACTGATCGGAAGTCTGGTCTTAGAGCTATTGTCAAAGCTGGTTCTGGTTGTAATCTTATCCCACTGGTGTTTGAGAGCAAACTTGTCAACACAAGAAAAAGCAGAATCCTCTCTCCTCACTTGACTAAATGGTTACGTGAGAGAAATCTCTCAGCTGAATCCCGTCTGCTACGTCTGGAGGAAGGGTATGTACAAGAAGGAAGCACGGTGACTGTATTTGGCATGCTGCACAAGAATAATGAGATGACCACGATTGTTCAACCACCGGAAGTAATCTCCAGTGGTTGTCAATGGCGAAAACTACTTCTCCCTGTTGACATTGATGGACTCATCCTTATCTCTCAAATGGCTGGGCAATCTGTCAACCAAAATTCTATACAACACCCAGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.38

Weight (kDa)

9.15

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17310
malus_domestica MD07G1155900.v1.1
prunus_persica Prupe.2G194300_v2.0.a1
pyrus_communis pycom07g15290
rosa_chinensis RchiOBHm_Chr1g0360741
rosa_laevigata RLG00000027789
rosa_multiflora Rmu_ssc0000022.1_g000012
rosa_roxburghii Rroxscaffold_4G00295860
rosa_rugosa Rorug01G0281300
rosa_samantha Rh1AG293300 Rh1BG257700 Rh1DG287800
rosa_wichuraiana Rw1G025940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 20, 327
AcsI RAATTY 1 cut(s) 865
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 280, 327
AgsI TTSAA 2 cut(s) 55, 755
AjnI CCWGG 2 cut(s) 297, 339
AluBI AGCT 3 cut(s) 521, 533, 650
AluI AGCT 3 cut(s) 521, 533, 650
Alw26I GTCTC 3 cut(s) 121, 288, 338
AoxI GGCC 3 cut(s) 31, 106, 222
ApeKI GCWGC 1 cut(s) 721
ApoI RAATTY 1 cut(s) 865
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 669, 701
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 708
BccI CCATC 3 cut(s) 101, 128, 812
BceAI ACGGC 2 cut(s) 122, 221
BciT130I CCWGG 2 cut(s) 299, 341
BcoDI GTCTC 3 cut(s) 121, 288, 338
BfaI CTAG 3 cut(s) 42, 366, 423
BisI GCNGC 1 cut(s) 722
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 723
Bme1390I CCNGG 2 cut(s) 299, 341
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 299, 341
BmrI ACTGGG 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 2 cut(s) 692, 757
Bpu1102I GCTNAGC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 8 cut(s) 31, 61, 285, 315, 665, 695, 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 327
Bse1I ACTGG 4 cut(s) 316, 448, 564, 774
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 299, 341
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 825
BseLI CCNNNNNNNGG 2 cut(s) 280, 327
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 17, 299, 660
BseNI ACTGG 4 cut(s) 316, 448, 564, 774
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 1 cut(s) 708
BseYI CCCAGC 1 cut(s) 845
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 33, 108, 224
BsiSI CCGG 1 cut(s) 761
BslI CCNNNNNNNGG 2 cut(s) 280, 327
BsmAI GTCTC 3 cut(s) 121, 288, 338
BsnI GGCC 3 cut(s) 33, 108, 224
Bso31I GGTCTC 1 cut(s) 288
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 3 cut(s) 306, 437, 499
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 2 cut(s) 20, 327
BspANI GGCC 3 cut(s) 33, 108, 224
BspCNI CTCAG 3 cut(s) 18, 298, 659
BspFNI CGCG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 4 cut(s) 316, 448, 564, 774
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 306, 437, 499
Bst2UI CCWGG 2 cut(s) 299, 341
Bst4CI ACNGT 2 cut(s) 703, 709
Bst6I CTCTTC 2 cut(s) 158, 264
BstAUI TGTACA 1 cut(s) 685
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 318, 719
BstDEI CTNAG 4 cut(s) 26, 285, 515, 646
BstF5I GGATG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 309, 440, 502
BstMAI GTCTC 3 cut(s) 121, 288, 338
BstMBI GATC 3 cut(s) 306, 437, 499
BstNI CCWGG 2 cut(s) 299, 341
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 297, 339
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 708
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 33, 108, 224
BtsCI GGATG 1 cut(s) 825
BtsIMutI CAGTG 4 cut(s) 309, 455, 557, 781
Cac8I GCNNGC 2 cut(s) 318, 719
Cfr13I GGNCC 1 cut(s) 222
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 686
CviAII CATG 4 cut(s) 290, 324, 441, 718
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 4 cut(s) 26, 285, 515, 646
DpnI GATC 3 cut(s) 308, 439, 501
DpnII GATC 3 cut(s) 306, 437, 499
Eam1104I CTCTTC 2 cut(s) 158, 264
EarI CTCTTC 2 cut(s) 158, 264
Eco147I AGGCCT 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 297, 339
FaeI CATG 4 cut(s) 293, 327, 444, 721
FatI CATG 4 cut(s) 289, 323, 440, 717
FauI CCCGC 1 cut(s) 320
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 722
FokI GGATG 1 cut(s) 812
Fsp4HI GCNGC 1 cut(s) 722
FspBI CTAG 3 cut(s) 42, 366, 423
GluI GCNGC 1 cut(s) 722
GsaI CCCAGC 1 cut(s) 849
GsuI CTGGAG 2 cut(s) 692, 757
HaeIII GGCC 3 cut(s) 33, 108, 224
HapII CCGG 1 cut(s) 761
Hin1II CATG 4 cut(s) 293, 327, 444, 721
HincII GTYRAC 3 cut(s) 583, 811, 859
HindII GTYRAC 3 cut(s) 583, 811, 859
HinfI GANTC 7 cut(s) 266, 331, 344, 474, 600, 653, 822
HpaII CCGG 1 cut(s) 761
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 4 cut(s) 142, 583, 811, 859
Hpy188I TCNGA 3 cut(s) 27, 271, 504
Hpy188III TCNNGA 4 cut(s) 205, 263, 304, 671
Hpy8I GTNNAC 4 cut(s) 142, 583, 811, 859
HpyAV CCTTC 4 cut(s) 61, 284, 671, 686
HpyCH4III ACNGT 2 cut(s) 703, 709
HpyCH4IV ACGT 2 cut(s) 631, 667
HpyCH4V TGCA 1 cut(s) 724
HpyF3I CTNAG 4 cut(s) 26, 285, 515, 646
HpySE526I ACGT 2 cut(s) 631, 667
Hsp92II CATG 4 cut(s) 293, 327, 444, 721
Kzo9I GATC 3 cut(s) 306, 437, 499
Lsp1109I GCAGC 1 cut(s) 708
MabI ACCWGGT 1 cut(s) 297
MaeI CTAG 3 cut(s) 42, 366, 423
MaeII ACGT 2 cut(s) 631, 667
MaeIII GTNAC 2 cut(s) 627, 703
MalI GATC 3 cut(s) 308, 439, 501
MboI GATC 3 cut(s) 306, 437, 499
MboII GAAGA 8 cut(s) 88, 115, 145, 148, 154, 157, 251, 339
MluCI AATT 1 cut(s) 865
MlyI GAGTC 3 cut(s) 260, 340, 816
MseI TTAA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 2 cut(s) 299, 341
MvaI CCWGG 2 cut(s) 299, 341
MvnI CGCG 1 cut(s) 20
NdeI CATATG 1 cut(s) 352
NdeII GATC 3 cut(s) 306, 437, 499
NlaIII CATG 4 cut(s) 293, 327, 444, 721
NmuCI GTSAC 1 cut(s) 703
NspI RCATGY 1 cut(s) 721
PaeI GCATGC 1 cut(s) 721
PceI AGGCCT 1 cut(s) 108
PfeI GAWTC 4 cut(s) 344, 474, 600, 653
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 723
PleI GAGTC 3 cut(s) 260, 339, 816
PpsI GAGTC 3 cut(s) 260, 339, 816
Ppu21I YACGTR 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 297, 339
PspFI CCCAGC 1 cut(s) 845
PspGI CCWGG 2 cut(s) 297, 339
PspPI GGNCC 1 cut(s) 222
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 1 cut(s) 722
Sau3AI GATC 3 cut(s) 306, 437, 499
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 3 cut(s) 260, 340, 816
ScrFI CCNGG 2 cut(s) 299, 341
SetI ASST 8 cut(s) 12, 276, 300, 523, 535, 634, 652, 670
SexAI ACCWGGT 1 cut(s) 297
SphI GCATGC 1 cut(s) 721
Sse9I AATT 1 cut(s) 865
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 2 cut(s) 20, 327
SspI AATATT 1 cut(s) 464
SspMI CTAG 3 cut(s) 42, 366, 423
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 297, 339
TaaI ACNGT 2 cut(s) 703, 709
TaiI ACGT 2 cut(s) 634, 670
TasI AATT 1 cut(s) 865
TatI WGTACW 1 cut(s) 685
TfiI GAWTC 4 cut(s) 344, 474, 600, 653
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 4 cut(s) 316, 455, 564, 781
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 1 cut(s) 721
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 5 cut(s) 17, 115, 339, 369, 411
TspRI CASTG 4 cut(s) 316, 455, 564, 781
Tth111I GACNNNGTC 1 cut(s) 299
XapI RAATTY 1 cut(s) 865
XceI RCATGY 1 cut(s) 721
XspI CTAG 3 cut(s) 42, 366, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.