Prupe.2G194300_v2.0.a1

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017362
Physical Location & Seq
Reverse (-)
23255590 .. 23258508
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G194300.1

Sequence Viewer

Length: 879 bp
ATGAACGACCTCTCAAATGCAGCTCTGAGAGACCACCAAAGCAGCGCCTTTAAGCCCATACCTTCTCTGGTCCTCTACATTCTTGTACCCATCTTCTTCTTGGGCCTCTCGGTCTCCATCTTCATCCTCATTGTTGTCCACAACGCCCTCTTCTTCGTCTCCTTCCTCGTGCTCTCTGCTCTTGTTTTTGCTTTCGTTGTCTGGAACAAGCGTCACTGGGCGAAGAAAGCTGCATTCTTTTTGTTCCTCAACTCTCTTCCTGAGTCTGACCTTCGTCTCGCTCAGCACGGGCAGCTTGTTAAGATCACTGGGATTGCTTCATGTGAGAGTCTCTCCCTGGAATCTTCATATGAAAAGGCTACCGGATGTATCTATGCGTCTACTCTTTTATATGAATATAGGGGATTAACTCGACAGCCAGTGAATATCAATAGTTCATGCTTCCAGTGGCATTTAGCATATTGTGAGAGATTCTCCACAGACTTTTACTTAACCGATCAGAAGTCTGGTCTTAGAGCTACTGTCAAAGCTGGTTCTGGTTGTAAAGTTATTCCACTGGTCGTTGAGAGCAAACTTGTCAACACTAAAAGATGTAGACTCCTCTCCCCTCACTTGAGGAAATGGTTAAGTGAGAGAAATCTCTCGTCTGAATCCCGTCTACTACGTTTGGAGGAAGGGTATGTACAAGAAGGCAGCTCTGTGACAGTATTTGGAATGTTGCATAGAAACAATGAGATAACTACGATTGTTCAACCACCAGAAGTAATCTCCACCGGGTGTCTATGGCGAAAACTGCTTCTCCCAGTCGACATTGATGGGCTGATCCTAAGGGTCTCTCAACTGGCTCAGCATTCTGCCAACCCAAATTCTATACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.82

Weight (kDa)

9.18

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17310
malus_domestica MD07G1155900.v1.1
prunus_persica Prupe.2G194300_v2.0.a1
pyrus_communis pycom07g15290
rosa_chinensis RchiOBHm_Chr1g0360741
rosa_laevigata RLG00000027789
rosa_multiflora Rmu_ssc0000022.1_g000012
rosa_roxburghii Rroxscaffold_4G00295860
rosa_rugosa Rorug01G0281300
rosa_samantha Rh1AG293300 Rh1BG257700 Rh1DG287800
rosa_wichuraiana Rw1G025940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 380, 595, 658, 807
AclWI GGATC 1 cut(s) 817
AcsI RAATTY 1 cut(s) 865
AdeI CACNNNGTG 1 cut(s) 777
AfaI GTAC 2 cut(s) 87, 684
AgsI TTSAA 1 cut(s) 752
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 6 cut(s) 23, 230, 295, 518, 530, 696
AluI AGCT 6 cut(s) 23, 230, 295, 518, 530, 696
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 6 cut(s) 24, 118, 163, 281, 335, 838
AlwI GGATC 1 cut(s) 817
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 5 cut(s) 20, 42, 230, 292, 693
ApoI RAATTY 1 cut(s) 865
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 70, 103
AsuC2I CCSGG 1 cut(s) 775
AvaII GGWCC 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 827
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 5 cut(s) 32, 54, 217, 304, 705
BccI CCATC 3 cut(s) 98, 125, 809
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 6 cut(s) 24, 118, 163, 281, 335, 838
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 5 cut(s) 21, 43, 231, 293, 694
BlpI GCTNAGC 2 cut(s) 282, 846
BlsI GCNGC 5 cut(s) 22, 44, 232, 294, 695
Bme1390I CCNGG 2 cut(s) 338, 775
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 103
BmrFI CCNGG 2 cut(s) 338, 775
BmrI ACTGGG 3 cut(s) 226, 318, 797
BmuI ACTGGG 3 cut(s) 226, 318, 797
BoxI GACNNNNGTC 1 cut(s) 273
BplI GAGNNNNNCTC 4 cut(s) 317, 349, 458, 490
Bpu1102I GCTNAGC 2 cut(s) 282, 846
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 775
BsaI GGTCTC 3 cut(s) 24, 118, 838
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 4 cut(s) 662, 692, 783, 813
Bse1I ACTGG 7 cut(s) 221, 313, 419, 445, 561, 803, 846
Bse21I CCTNAGG 1 cut(s) 827
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 123, 371
BseMII CTCAG 4 cut(s) 17, 252, 296, 860
BseNI ACTGG 7 cut(s) 221, 313, 419, 445, 561, 803, 846
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 5 cut(s) 32, 54, 217, 304, 705
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 363, 774
BsmAI GTCTC 6 cut(s) 24, 118, 163, 281, 335, 838
BsmBI CGTCTC 2 cut(s) 163, 281
BsmI GAATGC 2 cut(s) 233, 850
BsnI GGCC 1 cut(s) 105
Bso31I GGTCTC 3 cut(s) 24, 118, 838
Bsp1286I GDGCHC 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 303, 496, 822
Bsp1720I GCTNAGC 2 cut(s) 282, 846
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 4 cut(s) 18, 253, 295, 859
BspPI GGATC 1 cut(s) 817
BspTNI GGTCTC 3 cut(s) 24, 118, 838
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 7 cut(s) 221, 313, 419, 445, 561, 803, 846
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 303, 496, 822
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 523, 706
Bst6I CTCTTC 2 cut(s) 155, 261
BstAUI TGTACA 1 cut(s) 682
BstDEI CTNAG 6 cut(s) 26, 261, 282, 512, 827, 846
BstF5I GGATG 2 cut(s) 123, 371
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 306, 499, 825
BstMAI GTCTC 6 cut(s) 24, 118, 163, 281, 335, 838
BstMBI GATC 3 cut(s) 303, 496, 822
BstMWI GCNNNNNNNGC 3 cut(s) 227, 292, 793
BstNI CCWGG 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 336, 773
BstV1I GCAGC 5 cut(s) 32, 54, 217, 304, 705
Bsu36I CCTNAGG 1 cut(s) 827
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 123, 371
BtsIMutI CAGTG 5 cut(s) 214, 306, 426, 452, 554
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 70, 103
CseI GACGC 2 cut(s) 200, 366
Csp6I GTAC 2 cut(s) 86, 683
CviAII CATG 2 cut(s) 321, 438
CviQI GTAC 2 cut(s) 86, 683
DdeI CTNAG 6 cut(s) 26, 261, 282, 512, 827, 846
DpnI GATC 3 cut(s) 305, 498, 824
DpnII GATC 3 cut(s) 303, 496, 822
DraIII CACNNNGTG 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 155, 261
EarI CTCTTC 2 cut(s) 155, 261
Eco31I GGTCTC 3 cut(s) 24, 118, 838
Eco47I GGWCC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 827
EcoRII CCWGG 1 cut(s) 336
Esp3I CGTCTC 2 cut(s) 163, 281
FaeI CATG 2 cut(s) 324, 441
FatI CATG 2 cut(s) 320, 437
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 4 cut(s) 380, 595, 658, 807
Fnu4HI GCNGC 5 cut(s) 21, 43, 231, 293, 694
FokI GGATG 2 cut(s) 110, 378
Fsp4HI GCNGC 5 cut(s) 21, 43, 231, 293, 694
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 21, 43, 231, 293, 694
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 363, 774
HgaI GACGC 2 cut(s) 200, 366
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 324, 441
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 2 cut(s) 580, 808
HindII GTYRAC 2 cut(s) 580, 808
HinfI GANTC 6 cut(s) 263, 328, 341, 471, 597, 650
HpaII CCGG 2 cut(s) 363, 774
Hpy166II GTNNAC 6 cut(s) 139, 381, 580, 596, 659, 808
Hpy188I TCNGA 4 cut(s) 27, 268, 501, 649
Hpy188III TCNNGA 2 cut(s) 202, 260
Hpy8I GTNNAC 6 cut(s) 139, 381, 580, 596, 659, 808
HpyAV CCTTC 5 cut(s) 72, 172, 281, 668, 683
HpyCH4III ACNGT 2 cut(s) 523, 706
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 3 cut(s) 20, 233, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 292, 793
HpyF3I CTNAG 6 cut(s) 26, 261, 282, 512, 827, 846
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 2 cut(s) 324, 441
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 303, 496, 822
Lsp1109I GCAGC 5 cut(s) 32, 54, 217, 304, 705
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 2 cut(s) 212, 700
MalI GATC 3 cut(s) 305, 498, 824
MboI GATC 3 cut(s) 303, 496, 822
MboII GAAGA 8 cut(s) 85, 88, 112, 142, 145, 235, 248, 336
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 865
MlyI GAGTC 3 cut(s) 272, 337, 591
MseI TTAA 5 cut(s) 51, 300, 407, 491, 626
MspI CCGG 2 cut(s) 363, 774
MspR9I CCNGG 2 cut(s) 338, 775
Mva1269I GAATGC 2 cut(s) 233, 850
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 227, 292, 793
NciI CCSGG 1 cut(s) 775
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 303, 496, 822
NlaIII CATG 2 cut(s) 324, 441
NmuCI GTSAC 2 cut(s) 212, 700
PctI GAATGC 2 cut(s) 233, 850
PfeI GAWTC 3 cut(s) 341, 471, 650
PkrI GCNGC 5 cut(s) 22, 44, 232, 294, 695
PleI GAGTC 3 cut(s) 271, 336, 591
PpsI GAGTC 3 cut(s) 271, 336, 591
PshAI GACNNNNGTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspPI GGNCC 2 cut(s) 70, 103
RsaI GTAC 2 cut(s) 87, 684
RsaNI GTAC 2 cut(s) 86, 683
SalI GTCGAC 1 cut(s) 806
SaqAI TTAA 5 cut(s) 51, 300, 407, 491, 626
SatI GCNGC 5 cut(s) 21, 43, 231, 293, 694
Sau3AI GATC 3 cut(s) 303, 496, 822
Sau96I GGNCC 2 cut(s) 70, 103
SchI GAGTC 3 cut(s) 272, 337, 591
ScrFI CCNGG 2 cut(s) 338, 775
SduI GDGCHC 1 cut(s) 174
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 1 cut(s) 865
StyD4I CCNGG 2 cut(s) 336, 773
TaaI ACNGT 2 cut(s) 523, 706
TaiI ACGT 1 cut(s) 667
TaqI TCGA 2 cut(s) 412, 807
TaqII GACCGA 1 cut(s) 100
TasI AATT 1 cut(s) 865
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 3 cut(s) 341, 471, 650
Tru1I TTAA 5 cut(s) 51, 300, 407, 491, 626
Tru9I TTAA 5 cut(s) 51, 300, 407, 491, 626
TscAI CASTG 5 cut(s) 221, 313, 426, 452, 561
TseFI GTSAC 2 cut(s) 212, 700
TseI GCWGC 5 cut(s) 20, 42, 230, 292, 693
Tsp45I GTSAC 2 cut(s) 212, 700
TspDTI ATGAA 7 cut(s) 17, 112, 309, 336, 366, 408, 426
TspRI CASTG 5 cut(s) 221, 313, 426, 452, 561
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 97
XmiI GTMKAC 4 cut(s) 380, 595, 658, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.