FvH4_7g18450

Nodulin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
15418190 .. 15419941
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18450.t1

Sequence Viewer

Length: 1752 bp
ATGAAGAGCCTTGTCCTGCAAGTCCTCAAAGGACGATGGCTGATTGTGTTTGCTTCATTTCTGATGATGGTCACAGCCGGTGCCAGCTACATGTTCGGCCTCTACTCCAACGACATCAAGTCTGTCCTCGGCTACGACCAAACCACCCTCAACCTCATCAGCTTCTCCAAAGACCTAGGTGCCAACATTGGCATCCTCTCCGGCCTCATCAACGAAGTCACACCACCCTGGGTGGTCTTATCAATCGGTGCAGTCCTCAACTTCTTCGGGCACTTCATGATTTGGCTAGCAGTAGCTCAAAAAATCCATAAACCCCAAGTTTGGCACATGTGCATGTACATGGGCATAGGAGCTAACTCACACACTTTCACCAACACCGGAGCTCTGGTCACCTGCGTGAAGAACTTCCCGGAGAGCCGTGGCATCGTGCTAGGGCTTTTGAAGAGCTATACTGGTATAAGTGCAGCTGTGGTGGCACAGCTGTACCATGCCGTCTACGGTGACGATACCAAGTATTTCACTTTGGTTGTGGCCTGGCTTCCGACAGCTATTTCCTTCGCCTTCATCGGAACTATTCGGATCATGAAGGTTAGTCGACGTGGCTCGAACGAGCTCAAGGCTTTTTATCACTTCCTCTATCTGTCACTAGGTCTAGCTGCATTTTTGTTGGTTATAATTATAGTGGAAAAAAGGGTCACGTTTAGTCCAAGTGAGTATGTTGGAAGTGCAGCTGTAGTCCTCTTTTTACTCTTTTTACCACTTACCGTGGTAATTATGGAAGAGTACAAGGTTTGGGAGAGCAAGAGATCAATAGTAACTAAAGATTCTAGCCATGCCAAACCGGAGATTTTGGGGCATCGAGATGAACCATTAGAACATTTTGTTGTCATTGAAAAAGAAGTTTCTTGGCGGAAAGACATATTTAACCCGCCGGAGATCGGAGAGGACTTCACCATACTTCAAGCCGTTTTCAGCGTCGAGATGGTGACTTTACTCTTTGCAACAATTTGTGGACTTGGAGGCACCATGACCATGATGGACAACTTGGGACAAATTGGTACATCTCTTGGGTACCCTCTGAAAAGCATAAGAAACTTTGTGTCCCTAACAAGCATATGGAACTATTCAGGTCATATTGCCGCTGGTATAGGCTCAGAAATATTCATCACAAAGTACAAATGGCCTCGCCCTCTAATTTTCACAGCAATTCTCTTGCTCTCGTGTGTTGGTCATCTTCTAATAGCGTTCAACATCCCATATGGTGTCTATGTTGCTTCAGTGGTCACTGGTTTTTGTTTTGGTGCTCATTGGCCTTTGATCTACACCATTATATCCGAGCTTTTCGGCCTCAAGTACTACTCGACTTTGTACAATATTGGTGGATTGGCTAGCCCTATTGGGTTGTATGTGCTCAATGTGAGGGTTACGGGGCATTTGTATGATGTGGAGGCTAAGAAGCAAATGGCAGCTTTGGGGATTCAGAGGAAGGTTGGAGAGGAGTTGAACTGTGTTGGGGGAGAGTGCTTCAAATGGTCTTTCATCATTATTACTGTGGTAACTTTTGTTGGAACACTAGTTTCTTTGGTTTTGGTGGTGAGGACAAGGAAGTTTTATAAGGGTGATATTTACAAGAAGTTTAGAGAAACGGTTAGTGTGGCTGATGAAACGAAATTAGAGGTTGCTAAAACTTCTGCTGGAGTGGAAACTACTGGTCTCAAACATGACCTCTCCAAGCCCAGAGGTCAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

64.72

Weight (kDa)

9.07

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 12 - 258 1.3e-86 Nodulin-like
MFS_1 PF07690 245 - 465 7e-07 Major Facilitator Superfamily
NFD4_C PF23262 339 - 538 1.8e-15 NFD4, C-terminal domain
MFS_1 PF07690 393 - 536 6.6e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016921)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 674, 1614
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
Acc65I GGTACC 1 cut(s) 1071
AccB1I GGYRCC 4 cut(s) 80, 179, 1022, 1071
AccI GTMKAC 2 cut(s) 495, 595
AciI CCGC 3 cut(s) 910, 929, 1140
AclWI GGATC 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 1260
AfaI GTAC 8 cut(s) 338, 485, 785, 1060, 1073, 1175, 1355, 1370
AfiI CCNNNNNNNGG 2 cut(s) 321, 938
AflIII ACRYGT 2 cut(s) 90, 327
AgsI TTSAA 6 cut(s) 442, 893, 962, 1249, 1504, 1528
AhdI GACNNNNNGTC 1 cut(s) 118
AhlI ACTAGT 1 cut(s) 1573
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 2 cut(s) 227, 533
AleI CACNNNNGTG 1 cut(s) 395
Alw21I GWGCWC 4 cut(s) 385, 615, 1306, 1413
Alw26I GTCTC 1 cut(s) 1718
AlwI GGATC 1 cut(s) 587
AoxI GGCC 6 cut(s) 97, 202, 531, 1181, 1310, 1345
ApeKI GCWGC 4 cut(s) 464, 656, 728, 1466
Asp700I GAANNNNTTC 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 1071
AspA2I CCTAGG 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 7 cut(s) 361, 382, 512, 943, 997, 1606, 1631
AsuNHI GCTAGC 2 cut(s) 286, 1388
AvrII CCTAGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 273
BaeI ACNNNNGTAYC 2 cut(s) 467, 500
BanI GGYRCC 4 cut(s) 80, 179, 1022, 1071
BanII GRGCYC 2 cut(s) 385, 615
BauI CACGAG 1 cut(s) 1219
Bbv12I GWGCWC 4 cut(s) 385, 615, 1306, 1413
BbvI GCAGC 4 cut(s) 476, 643, 740, 1478
BccI CCATC 4 cut(s) 30, 61, 976, 1030
BceAI ACGGC 3 cut(s) 402, 476, 950
BciT130I CCWGG 2 cut(s) 229, 535
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 1718
BcuI ACTAGT 1 cut(s) 1573
BfaI CTAG 8 cut(s) 176, 287, 431, 647, 653, 828, 1389, 1574
BfmI CTRYAG 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 5 cut(s) 465, 657, 729, 1140, 1467
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 5 cut(s) 466, 658, 730, 1141, 1468
BmcAI AGTACT 1 cut(s) 1355
Bme1390I CCNGG 3 cut(s) 229, 410, 535
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 599
BmiI GGNNCC 4 cut(s) 82, 181, 1024, 1073
BmrFI CCNGG 3 cut(s) 229, 410, 535
BmsI GCATC 3 cut(s) 201, 432, 865
BmtI GCTAGC 2 cut(s) 290, 1392
BpmI CTGGAG 1 cut(s) 1716
BpuEI CTTGAG 2 cut(s) 599, 1334
BpuMI CCSGG 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 1718
BsaJI CCNNGG 6 cut(s) 127, 175, 227, 228, 418, 765
BsaWI WCCGGW 2 cut(s) 377, 841
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 938
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 457, 1291, 1714
BseBI CCWGG 2 cut(s) 229, 535
BseDI CCNNGG 6 cut(s) 127, 175, 227, 228, 418, 765
BseGI GGATG 2 cut(s) 192, 1251
BseLI CCNNNNNNNGG 2 cut(s) 321, 938
BseMII CTCAG 1 cut(s) 1167
BseNI ACTGG 3 cut(s) 457, 1291, 1714
BseRI GAGGAG 1 cut(s) 1511
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 4 cut(s) 476, 643, 740, 1478
BsgI GTGCAG 3 cut(s) 270, 483, 747
BshFI GGCC 6 cut(s) 99, 204, 533, 1183, 1312, 1347
BshNI GGYRCC 4 cut(s) 80, 179, 1022, 1071
BsiHKAI GWGCWC 4 cut(s) 385, 615, 1306, 1413
BsiSI CCGG 6 cut(s) 78, 201, 378, 410, 842, 932
BslFI GGGAC 2 cut(s) 1062, 1087
BslI CCNNNNNNNGG 2 cut(s) 321, 938
BsmAI GTCTC 1 cut(s) 1718
BsmFI GGGAC 2 cut(s) 1062, 1087
BsnI GGCC 6 cut(s) 99, 204, 533, 1183, 1312, 1347
Bso31I GGTCTC 1 cut(s) 1718
Bsp1286I GDGCHC 5 cut(s) 273, 385, 615, 1306, 1413
Bsp1407I TGTACA 2 cut(s) 336, 1368
Bsp143I GATC 4 cut(s) 579, 806, 936, 1317
BspACI CCGC 3 cut(s) 910, 929, 1140
BspANI GGCC 6 cut(s) 99, 204, 533, 1183, 1312, 1347
BspCNI CTCAG 1 cut(s) 1166
BspHI TCATGA 2 cut(s) 276, 582
BspLI GGNNCC 4 cut(s) 82, 181, 1024, 1073
BspMI ACCTGC 1 cut(s) 401
BspOI GCTAGC 2 cut(s) 290, 1392
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 437
BspT107I GGYRCC 4 cut(s) 80, 179, 1022, 1071
BspTNI GGTCTC 1 cut(s) 1718
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 2 cut(s) 336, 1368
BsrI ACTGG 3 cut(s) 457, 1291, 1714
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 6 cut(s) 127, 175, 227, 228, 418, 765
BssMI GATC 4 cut(s) 579, 806, 936, 1317
BssSI CACGAG 1 cut(s) 1219
BssT1I CCWWGG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 1219
Bst2UI CCWGG 2 cut(s) 229, 535
Bst4CI ACNGT 5 cut(s) 500, 766, 1508, 1552, 1648
Bst6I CTCTTC 2 cut(s) 437, 774
BstAUI TGTACA 2 cut(s) 336, 1368
BstC8I GCNNGC 3 cut(s) 85, 288, 1390
BstDEI CTNAG 2 cut(s) 1153, 1452
BstDSI CCRYGG 2 cut(s) 418, 765
BstEII GGTNACC 1 cut(s) 388
BstF5I GGATG 2 cut(s) 192, 1251
BstKTI GATC 4 cut(s) 582, 809, 939, 1320
BstMAI GTCTC 1 cut(s) 1718
BstMBI GATC 4 cut(s) 579, 806, 936, 1317
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 2 cut(s) 229, 535
BstNSI RCATGY 3 cut(s) 94, 331, 337
BstPI GGTNACC 1 cut(s) 388
BstSCI CCNGG 3 cut(s) 227, 408, 533
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 476, 643, 740, 1478
BsuRI GGCC 6 cut(s) 99, 204, 533, 1183, 1312, 1347
BtgI CCRYGG 2 cut(s) 418, 765
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 2 cut(s) 192, 1251
BtsIMutI CAGTG 2 cut(s) 1284, 1284
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 85, 288, 1390
CciI TCATGA 2 cut(s) 276, 582
Cfr10I RCCGGY 1 cut(s) 77
CseI GACGC 1 cut(s) 964
Csp6I GTAC 8 cut(s) 337, 484, 784, 1059, 1072, 1174, 1354, 1369
CspCI CAANNNNNGTGG 2 cut(s) 1360, 1395
CviQI GTAC 8 cut(s) 337, 484, 784, 1059, 1072, 1174, 1354, 1369
DdeI CTNAG 2 cut(s) 1153, 1452
DpnI GATC 4 cut(s) 581, 808, 938, 1319
DpnII GATC 4 cut(s) 579, 806, 936, 1317
DriI GACNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 437, 774
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 2 cut(s) 437, 774
EciI GGCGGA 1 cut(s) 925
Ecl136II GAGCTC 2 cut(s) 383, 613
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 385, 615
Eco31I GGTCTC 1 cut(s) 1718
Eco53kI GAGCTC 2 cut(s) 383, 613
Eco57I CTGAAG 1 cut(s) 1260
Eco91I GGTNACC 1 cut(s) 388
EcoICRI GAGCTC 2 cut(s) 383, 613
EcoO65I GGTNACC 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 227, 533
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 385, 615
ErhI CCWWGG 1 cut(s) 175
FaqI GGGAC 2 cut(s) 1062, 1087
FauI CCCGC 1 cut(s) 936
FauNDI CATATG 2 cut(s) 1115, 1258
FblI GTMKAC 2 cut(s) 495, 595
Fnu4HI GCNGC 5 cut(s) 465, 657, 729, 1140, 1467
FokI GGATG 2 cut(s) 179, 1238
FriOI GRGCYC 2 cut(s) 385, 615
Fsp4HI GCNGC 5 cut(s) 465, 657, 729, 1140, 1467
FspBI CTAG 8 cut(s) 176, 287, 431, 647, 653, 828, 1389, 1574
GluI GCNGC 5 cut(s) 465, 657, 729, 1140, 1467
GsuI CTGGAG 1 cut(s) 1716
HaeIII GGCC 6 cut(s) 99, 204, 533, 1183, 1312, 1347
HapII CCGG 6 cut(s) 78, 201, 378, 410, 842, 932
HgaI GACGC 1 cut(s) 964
HincII GTYRAC 1 cut(s) 596
HindII GTYRAC 1 cut(s) 596
HinfI GANTC 2 cut(s) 824, 1477
HpaII CCGG 6 cut(s) 78, 201, 378, 410, 842, 932
HphI GGTGA 7 cut(s) 361, 382, 512, 943, 997, 1606, 1631
Hpy166II GTNNAC 3 cut(s) 496, 596, 1013
Hpy188I TCNGA 9 cut(s) 63, 543, 569, 579, 941, 1080, 1156, 1336, 1482
Hpy188III TCNNGA 4 cut(s) 277, 583, 860, 979
Hpy8I GTNNAC 3 cut(s) 496, 596, 1013
Hpy99I CGWCG 2 cut(s) 600, 980
HpyAV CCTTC 4 cut(s) 565, 571, 580, 1480
HpyCH4III ACNGT 5 cut(s) 500, 766, 1508, 1552, 1648
HpyCH4IV ACGT 2 cut(s) 598, 698
HpyCH4V TGCA 7 cut(s) 19, 251, 333, 464, 659, 728, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 2 cut(s) 1153, 1452
HpySE526I ACGT 2 cut(s) 598, 698
KpnI GGTACC 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 579, 806, 936, 1317
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 2 cut(s) 350, 380
Lsp1109I GCAGC 4 cut(s) 476, 643, 740, 1478
LweI GCATC 3 cut(s) 201, 432, 865
MaeI CTAG 8 cut(s) 176, 287, 431, 647, 653, 828, 1389, 1574
MaeII ACGT 2 cut(s) 598, 698
MalI GATC 4 cut(s) 581, 808, 938, 1319
MboI GATC 4 cut(s) 579, 806, 936, 1317
MboII GAAGA 6 cut(s) 16, 256, 412, 454, 791, 1226
MhlI GDGCHC 5 cut(s) 273, 385, 615, 1306, 1413
MluCI AATT 7 cut(s) 675, 771, 1005, 1053, 1194, 1206, 1670
MmeI TCCRAC 5 cut(s) 132, 566, 700, 1471, 1546
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 6 cut(s) 332, 338, 395, 861, 1031, 1437
MspA1I CMGCKG 4 cut(s) 467, 481, 731, 1142
MspI CCGG 6 cut(s) 78, 201, 378, 410, 842, 932
MspR9I CCNGG 3 cut(s) 229, 410, 535
MvaI CCWGG 2 cut(s) 229, 535
MwoI GCNNNNNNNGC 1 cut(s) 473
NciI CCSGG 1 cut(s) 410
NdeI CATATG 2 cut(s) 1115, 1258
NdeII GATC 4 cut(s) 579, 806, 936, 1317
NheI GCTAGC 2 cut(s) 286, 1388
NlaIV GGNNCC 4 cut(s) 82, 181, 1024, 1073
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 8 cut(s) 70, 217, 388, 500, 642, 694, 985, 1282
NspI RCATGY 3 cut(s) 94, 331, 337
OliI CACNNNNGTG 1 cut(s) 395
PagI TCATGA 2 cut(s) 276, 582
PaqCI CACCTGC 1 cut(s) 401
PasI CCCWGGG 1 cut(s) 228
PciI ACATGT 2 cut(s) 90, 327
PciSI GCTCTTC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 824, 1477
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 5 cut(s) 466, 658, 730, 1141, 1468
PscI ACATGT 2 cut(s) 90, 327
PsiI TTATAA 2 cut(s) 674, 1614
Psp124BI GAGCTC 2 cut(s) 385, 615
Psp6I CCWGG 2 cut(s) 227, 533
PspEI GGTNACC 1 cut(s) 388
PspGI CCWGG 2 cut(s) 227, 533
PspN4I GGNNCC 4 cut(s) 82, 181, 1024, 1073
PvuII CAGCTG 3 cut(s) 467, 481, 731
RsaI GTAC 8 cut(s) 338, 485, 785, 1060, 1073, 1175, 1355, 1370
RsaNI GTAC 8 cut(s) 337, 484, 784, 1059, 1072, 1174, 1354, 1369
RseI CAYNNNNRTG 6 cut(s) 332, 338, 395, 861, 1031, 1437
SacI GAGCTC 2 cut(s) 385, 615
SalI GTCGAC 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 5 cut(s) 465, 657, 729, 1140, 1467
Sau3AI GATC 4 cut(s) 579, 806, 936, 1317
ScaI AGTACT 1 cut(s) 1355
ScrFI CCNGG 3 cut(s) 229, 410, 535
SduI GDGCHC 5 cut(s) 273, 385, 615, 1306, 1413
SfaNI GCATC 3 cut(s) 201, 432, 865
SfcI CTRYAG 1 cut(s) 732
SmiMI CAYNNNNRTG 6 cut(s) 332, 338, 395, 861, 1031, 1437
SmlI CTYRAG 2 cut(s) 614, 1349
SmoI CTYRAG 2 cut(s) 614, 1349
SpeI ACTAGT 1 cut(s) 1573
Sse9I AATT 7 cut(s) 675, 771, 1005, 1053, 1194, 1206, 1670
SsiI CCGC 3 cut(s) 910, 929, 1140
SspI AATATT 2 cut(s) 1161, 1375
SspMI CTAG 8 cut(s) 176, 287, 431, 647, 653, 828, 1389, 1574
SstI GAGCTC 2 cut(s) 385, 615
StyD4I CCNGG 3 cut(s) 227, 408, 533
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 5 cut(s) 500, 766, 1508, 1552, 1648
TaiI ACGT 2 cut(s) 601, 701
TaqI TCGA 5 cut(s) 595, 605, 859, 978, 1361
TasI AATT 7 cut(s) 675, 771, 1005, 1053, 1194, 1206, 1670
TatI WGTACW 5 cut(s) 336, 783, 1173, 1353, 1368
TauI GCSGC 1 cut(s) 1142
TfiI GAWTC 2 cut(s) 824, 1477
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 2 cut(s) 1284, 1291
TseFI GTSAC 8 cut(s) 70, 217, 388, 500, 642, 694, 985, 1282
TseI GCWGC 4 cut(s) 464, 656, 728, 1466
Tsp45I GTSAC 8 cut(s) 70, 217, 388, 500, 642, 694, 985, 1282
TspDTI ATGAA 9 cut(s) 17, 45, 265, 553, 599, 879, 1153, 1528, 1677
TspRI CASTG 2 cut(s) 1284, 1291
XceI RCATGY 3 cut(s) 94, 331, 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 1033
XmaJI CCTAGG 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 495, 595
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 8 cut(s) 176, 287, 431, 647, 653, 828, 1389, 1574
ZrmI AGTACT 1 cut(s) 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.