Rorug01G0296000

Transcription elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012966
Physical Location & Seq
Forward (+)
41137519 .. 41141155
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0296000.1

Sequence Viewer

Length: 1545 bp
ATGTTGGCAACTCACGCGCAACCCGCTTTGTTAAACTCGCTCCTCCTCCGCATTCCCTCTCTCTCGCTTCGCACACTTCCACTCATTCAAGTAACCAATCTTCGCTACTTCAGCCATCCACGGACCTCGGCGCGTAGATTCACAGCCATGTCCGTACATACCGCCACCTCCGGCGACTCGCCGAAAGACCACGTCGCCGGGGACTGGTTTTCCGTACCGGAGCTCCGACTTCGCGACCACCGCTTCTTCGTGCCTCTAGACTACTCCGCCGCCGATCCTAAGGCTTCGTCTAAGATTTCAATCTTCGCTCGCGAAGTTGTTTCAGTTGGCAAAGAAGAGCAACCACTACCATACCTATTATTTCTACAAGGTGGACCTGGATTCGAAAGCCCGCGACCAACTGAAGCCAGTGGTTGGGTGCGTAAAGCCTGTGAAGAATATCGTGTCATATTGCTGGATCAGCGAGGAACGGGTTTGTCTACTCCTTTGACACCTTCATCAATGTTGCAACTGAAGTCTGATGTGAAGTTGGCTGATTACTTACAACATTTTCGAGCCAATAATATAGTAAATGATGCTGAGTTTATTCGAGTACGTTTAGTTCCTGATGCAGGACGTTGGACAATTTTGGGTCAGAGTTATGGTGGTTTTTGTGGGGTAACCTACTTGAGTTTTGCACCGCAAGGACTAAAACAAGTCCTTTTAACTGGAGGTATCCCTCCAATAGGAAATGGATGCACTGCAGATATCGTGTACAGAGCATGCTTTGAACAGATTATACGTCAGAATGAGAAGTACTACAAAAGGTATCCTCAAGATACTGAGATTGTTCGTGAAGTTGTTAACTTTTTGTCAGAATCTGAGGGAGGTGGGGTACCTCTTCCATCCGGGGGCATCCTAACCCCAAAGGGATTGCAAACACTTGGTCTTTCTGGCTTAGGATCCAGTACTGGTTTTGAGCGCTTACACTACATGTTTGAGAGGGTCTGGGATCCTGTACTAGTTCCAGGATCACTGAAGCAAATCAGTTATTACTTCTTGAATGCTTTTGAGAAATGGTCATCTTTTGATACAAATCCACTTTATGCTCTAATGCACGAGTCCATATACTGTCAGGGTGCTCCATCACGGTGGTCTGCTCATAGAGTAAGGGCTGAAGATGAGGGCAAATTTGATGCAGTCCAGGCTGCAAAAGAAGGCCGTCCTGTATATTTCACAGGGGAGATGATCTTCCCATGGATGTTTGATGAGATTCATGCTCTAAGACAATTCAAAGGTGCTGCTAATGTGTTGGCTGAGAAAGAGGACTGGCCTCCATTATACGACATCACTGCACTAAATAATAACAAGGTGCCTGTTGTGGCTGCTGTTTATTATGAAGATATGTATGTTAACTTCAAGCTGGTGATGGAGACAGCTTCACAGATAGCAGGGATTCGGTTGTGGATAACTAACGAATATATGCATTCTGGTCTACGAGATTCAGGGACCCAGGTTTTTGATCATTTGATGGGAATGCTAGATGGAAAGAGGCCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032044 GO:0032259 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spt5-NGN

Protein Analysis

514

Amino Acids

57.7

Weight (kDa)

6.88

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 118 - 275 9.7e-12 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 874
AccB1I GGYRCC 2 cut(s) 874, 1351
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 2 cut(s) 479, 1474
AccII CGCG 5 cut(s) 17, 133, 234, 312, 394
AciI CCGC 8 cut(s) 24, 49, 162, 241, 267, 270, 392, 680
AclWI GGATC 7 cut(s) 269, 465, 936, 949, 986, 999, 1018
AcsI RAATTY 1 cut(s) 1169
AcuI CTGAAG 5 cut(s) 94, 423, 533, 1037, 1176
AfaI GTAC 8 cut(s) 156, 216, 594, 755, 797, 876, 949, 999
AfeI AGCGCT 1 cut(s) 962
AfiI CCNNNNNNNGG 5 cut(s) 204, 414, 611, 725, 890
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 6 cut(s) 89, 300, 770, 1042, 1273, 1399
AhlI ACTAGT 1 cut(s) 1000
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 4 cut(s) 376, 1006, 1182, 1491
AluBI AGCT 3 cut(s) 223, 1402, 1418
AluI AGCT 3 cut(s) 223, 1402, 1418
Alw21I GWGCWC 2 cut(s) 225, 1123
Alw26I GTCTC 1 cut(s) 1406
AlwI GGATC 7 cut(s) 269, 465, 936, 949, 986, 999, 1018
AlwNI CAGNNNCTG 1 cut(s) 860
Aor51HI AGCGCT 1 cut(s) 962
AoxI GGCC 3 cut(s) 1198, 1310, 1532
ApeKI GCWGC 3 cut(s) 1187, 1280, 1364
ApoI RAATTY 1 cut(s) 1169
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
Asp718I GGTACC 1 cut(s) 874
AspLEI GCGC 3 cut(s) 19, 133, 963
AspS9I GGNCC 3 cut(s) 123, 374, 1488
AsuC2I CCSGG 2 cut(s) 199, 889
AsuHPI GGTGA 1 cut(s) 1417
AsuII TTCGAA 1 cut(s) 384
AvaII GGWCC 3 cut(s) 123, 374, 1488
AxyI CCTNAGG 1 cut(s) 279
BamHI GGATCC 2 cut(s) 941, 991
BanI GGYRCC 2 cut(s) 874, 1351
BanII GRGCYC 1 cut(s) 225
BarI GAAGNNNNNNTAC 4 cut(s) 84, 116, 1379, 1411
BauI CACGAG 1 cut(s) 1097
Bbv12I GWGCWC 2 cut(s) 225, 1123
BbvI GCAGC 3 cut(s) 1174, 1267, 1351
BccI CCATC 6 cut(s) 123, 892, 1132, 1402, 1504, 1517
BceAI ACGGC 1 cut(s) 1185
BcgI CGANNNNNNTGC 2 cut(s) 1313, 1347
BciT130I CCWGG 4 cut(s) 378, 1008, 1184, 1493
BciVI GTATCC 2 cut(s) 725, 819
BclI TGATCA 1 cut(s) 1501
BcnI CCSGG 2 cut(s) 199, 889
BcoDI GTCTC 1 cut(s) 1406
BcuI ACTAGT 1 cut(s) 1000
BfaI CTAG 3 cut(s) 257, 1001, 1520
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 964
BfuI GTATCC 2 cut(s) 725, 819
BisI GCNGC 4 cut(s) 270, 1188, 1281, 1365
BlsI GCNGC 4 cut(s) 271, 1189, 1282, 1366
BmcAI AGTACT 2 cut(s) 797, 949
Bme1390I CCNGG 6 cut(s) 199, 378, 889, 1008, 1184, 1493
Bme18I GGWCC 3 cut(s) 123, 374, 1488
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 123, 374, 1488
BmiI GGNNCC 6 cut(s) 876, 943, 993, 1353, 1489, 1490
BmrFI CCNGG 6 cut(s) 199, 378, 889, 1008, 1184, 1493
BmsI GCATC 5 cut(s) 565, 598, 725, 903, 1165
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 937
Bpu14I TTCGAA 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 688, 798
BpuMI CCSGG 2 cut(s) 199, 889
BsaBI GATNNNNATC 2 cut(s) 299, 1074
BsaJI CCNNGG 6 cut(s) 119, 126, 198, 888, 1235, 1491
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 4 cut(s) 207, 237, 858, 888
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 414, 611, 725, 890
Bse1I ACTGG 6 cut(s) 209, 408, 712, 945, 955, 1313
Bse21I CCTNAGG 1 cut(s) 279
Bse8I GATNNNNATC 2 cut(s) 299, 1074
BseBI CCWGG 4 cut(s) 378, 1008, 1184, 1493
BseDI CCNNGG 6 cut(s) 119, 126, 198, 888, 1235, 1491
BseGI GGATG 5 cut(s) 115, 740, 884, 894, 1245
BseJI GATNNNNATC 2 cut(s) 299, 1074
BseLI CCNNNNNNNGG 5 cut(s) 204, 414, 611, 725, 890
BseMII CTCAG 4 cut(s) 570, 813, 852, 1287
BseNI ACTGG 6 cut(s) 209, 408, 712, 945, 955, 1313
BseRI GAGGAG 2 cut(s) 32, 35
BseXI GCAGC 3 cut(s) 1174, 1267, 1351
BsgI GTGCAG 1 cut(s) 1317
Bsh1236I CGCG 5 cut(s) 17, 133, 234, 312, 394
BshFI GGCC 3 cut(s) 1200, 1312, 1534
BshNI GGYRCC 2 cut(s) 874, 1351
BsiHKAI GWGCWC 2 cut(s) 225, 1123
BsiSI CCGG 4 cut(s) 171, 198, 218, 888
BslFI GGGAC 2 cut(s) 215, 1501
BslI CCNNNNNNNGG 5 cut(s) 204, 414, 611, 725, 890
BsmAI GTCTC 1 cut(s) 1406
BsmFI GGGAC 2 cut(s) 215, 1501
BsmI GAATGC 4 cut(s) 51, 1048, 1465, 1521
BsnI GGCC 3 cut(s) 1200, 1312, 1534
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 225, 1123
Bsp1407I TGTACA 1 cut(s) 753
Bsp143I GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
Bsp19I CCATGG 1 cut(s) 1235
Bsp68I TCGCGA 2 cut(s) 234, 312
BspACI CCGC 8 cut(s) 24, 49, 162, 241, 267, 270, 392, 680
BspANI GGCC 3 cut(s) 1200, 1312, 1534
BspCNI CTCAG 4 cut(s) 571, 814, 853, 1288
BspFNI CGCG 5 cut(s) 17, 133, 234, 312, 394
BspLI GGNNCC 6 cut(s) 876, 943, 993, 1353, 1489, 1490
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 7 cut(s) 269, 465, 936, 949, 986, 999, 1018
BspQI GCTCTTC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 384
BspT107I GGYRCC 2 cut(s) 874, 1351
BsrGI TGTACA 1 cut(s) 753
BsrI ACTGG 6 cut(s) 209, 408, 712, 945, 955, 1313
BssECI CCNNGG 6 cut(s) 119, 126, 198, 888, 1235, 1491
BssMI GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
BssSI CACGAG 1 cut(s) 1097
BssT1I CCWWGG 1 cut(s) 1235
Bst2BI CACGAG 1 cut(s) 1097
Bst2UI CCWGG 4 cut(s) 378, 1008, 1184, 1493
Bst4CI ACNGT 2 cut(s) 1112, 1131
Bst6I CTCTTC 2 cut(s) 330, 885
BstAUI TGTACA 1 cut(s) 753
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 310, 392, 763
BstDEI CTNAG 8 cut(s) 279, 291, 579, 822, 861, 937, 1262, 1296
BstDSI CCRYGG 2 cut(s) 119, 1235
BstEII GGTNACC 1 cut(s) 658
BstENI CCTNNNNNAGG 2 cut(s) 609, 723
BstF5I GGATG 5 cut(s) 115, 740, 884, 894, 1245
BstFNI CGCG 5 cut(s) 17, 133, 234, 312, 394
BstH2I RGCGCY 1 cut(s) 964
BstHHI GCGC 3 cut(s) 19, 133, 963
BstKTI GATC 7 cut(s) 277, 460, 944, 994, 1013, 1230, 1504
BstMAI GTCTC 1 cut(s) 1406
BstMBI GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 111, 240, 460, 1184
BstNI CCWGG 4 cut(s) 378, 1008, 1184, 1493
BstNSI RCATGY 2 cut(s) 765, 976
BstPI GGTNACC 1 cut(s) 658
BstSCI CCNGG 6 cut(s) 197, 376, 887, 1006, 1182, 1491
BstSFI CTRYAG 1 cut(s) 741
BstUI CGCG 5 cut(s) 17, 133, 234, 312, 394
BstV1I GCAGC 3 cut(s) 1174, 1267, 1351
BstX2I RGATCY 2 cut(s) 941, 991
BstXI CCANNNNNNTGG 1 cut(s) 1131
BstYI RGATCY 2 cut(s) 941, 991
Bsu36I CCTNAGG 1 cut(s) 279
BsuI GTATCC 2 cut(s) 725, 819
BsuRI GGCC 3 cut(s) 1200, 1312, 1534
BtgI CCRYGG 2 cut(s) 119, 1235
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 5 cut(s) 115, 740, 884, 894, 1245
BtsI GCAGTG 2 cut(s) 738, 1329
BtsIMutI CAGTG 4 cut(s) 415, 738, 1013, 1329
BtuMI TCGCGA 2 cut(s) 234, 312
Cac8I GCNNGC 3 cut(s) 310, 392, 763
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 3 cut(s) 19, 133, 963
Cfr13I GGNCC 3 cut(s) 123, 374, 1488
Csp6I GTAC 8 cut(s) 155, 215, 593, 754, 796, 875, 948, 998
CviAII CATG 5 cut(s) 148, 762, 973, 1236, 1256
CviQI GTAC 8 cut(s) 155, 215, 593, 754, 796, 875, 948, 998
DdeI CTNAG 8 cut(s) 279, 291, 579, 822, 861, 937, 1262, 1296
DpnI GATC 7 cut(s) 276, 459, 943, 993, 1012, 1229, 1503
DpnII GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
Eam1104I CTCTTC 2 cut(s) 330, 885
EarI CTCTTC 2 cut(s) 330, 885
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 1235
Eco147I AGGCCT 1 cut(s) 1534
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 3 cut(s) 123, 374, 1488
Eco47III AGCGCT 1 cut(s) 962
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 5 cut(s) 94, 423, 533, 1037, 1176
Eco81I CCTNAGG 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 658
EcoICRI GAGCTC 1 cut(s) 223
EcoNI CCTNNNNNAGG 2 cut(s) 609, 723
EcoO109I RGGNCCY 1 cut(s) 1488
EcoO65I GGTNACC 1 cut(s) 658
EcoRII CCWGG 4 cut(s) 376, 1006, 1182, 1491
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 1235
EcoT22I ATGCAT 1 cut(s) 1467
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 1235
FaeI CATG 5 cut(s) 151, 765, 976, 1239, 1259
FaqI GGGAC 2 cut(s) 215, 1501
FatI CATG 5 cut(s) 147, 761, 972, 1235, 1255
FauI CCCGC 2 cut(s) 31, 399
FbaI TGATCA 1 cut(s) 1501
FblI GTMKAC 2 cut(s) 479, 1474
Fnu4HI GCNGC 4 cut(s) 270, 1188, 1281, 1365
FokI GGATG 5 cut(s) 102, 747, 871, 881, 1252
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 4 cut(s) 270, 1188, 1281, 1365
FspBI CTAG 3 cut(s) 257, 1001, 1520
GlaI GCGC 3 cut(s) 18, 132, 962
GluI GCNGC 4 cut(s) 270, 1188, 1281, 1365
GsuI CTGGAG 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 964
HaeIII GGCC 3 cut(s) 1200, 1312, 1534
HapII CCGG 4 cut(s) 171, 198, 218, 888
HhaI GCGC 3 cut(s) 19, 133, 963
Hin1II CATG 5 cut(s) 151, 765, 976, 1239, 1259
Hin6I GCGC 3 cut(s) 17, 131, 961
HinP1I GCGC 3 cut(s) 17, 131, 961
HincII GTYRAC 2 cut(s) 844, 1393
HindII GTYRAC 2 cut(s) 844, 1393
HinfI GANTC 8 cut(s) 138, 176, 381, 857, 1100, 1252, 1435, 1481
HpaI GTTAAC 2 cut(s) 844, 1393
HpaII CCGG 4 cut(s) 171, 198, 218, 888
HphI GGTGA 1 cut(s) 1417
Hpy166II GTNNAC 6 cut(s) 374, 480, 754, 844, 1393, 1475
Hpy188I TCNGA 7 cut(s) 227, 520, 636, 786, 856, 862, 1544
Hpy188III TCNNGA 7 cut(s) 233, 257, 311, 605, 815, 833, 1039
Hpy8I GTNNAC 6 cut(s) 374, 480, 754, 844, 1393, 1475
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 504, 1190
HpyCH4III ACNGT 2 cut(s) 1112, 1131
HpyCH4IV ACGT 4 cut(s) 192, 595, 616, 781
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 111, 240, 460, 1184
HpyF3I CTNAG 8 cut(s) 279, 291, 579, 822, 861, 937, 1262, 1296
HpySE526I ACGT 4 cut(s) 192, 595, 616, 781
Hsp92II CATG 5 cut(s) 151, 765, 976, 1239, 1259
HspAI GCGC 3 cut(s) 17, 131, 961
KflI GGGWCCC 1 cut(s) 1488
KpnI GGTACC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 1501
KspAI GTTAAC 2 cut(s) 844, 1393
Kzo9I GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 4 cut(s) 45, 220, 228, 1126
Lsp1109I GCAGC 3 cut(s) 1174, 1267, 1351
LweI GCATC 5 cut(s) 565, 598, 725, 903, 1165
MaeI CTAG 3 cut(s) 257, 1001, 1520
MaeII ACGT 4 cut(s) 192, 595, 616, 781
MaeIII GTNAC 2 cut(s) 91, 658
MalI GATC 7 cut(s) 276, 459, 943, 993, 1012, 1229, 1503
MboI GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
MboII GAAGA 9 cut(s) 92, 238, 295, 347, 446, 872, 1169, 1222, 1391
MflI RGATCY 2 cut(s) 941, 991
MhlI GDGCHC 2 cut(s) 225, 1123
MluCI AATT 3 cut(s) 624, 1169, 1268
MlyI GAGTC 2 cut(s) 170, 1109
MmeI TCCRAC 2 cut(s) 250, 599
Mph1103I ATGCAT 1 cut(s) 1467
MseI TTAA 4 cut(s) 32, 704, 843, 1392
MslI CAYNNNNRTG 2 cut(s) 146, 1129
MspI CCGG 4 cut(s) 171, 198, 218, 888
MspR9I CCNGG 6 cut(s) 199, 378, 889, 1008, 1184, 1493
Mva1269I GAATGC 4 cut(s) 51, 1048, 1465, 1521
MvaI CCWGG 4 cut(s) 378, 1008, 1184, 1493
MvnI CGCG 5 cut(s) 17, 133, 234, 312, 394
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 111, 240, 460, 1184
NciI CCSGG 2 cut(s) 199, 889
NcoI CCATGG 1 cut(s) 1235
NdeII GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
NlaIII CATG 5 cut(s) 151, 765, 976, 1239, 1259
NlaIV GGNNCC 6 cut(s) 876, 943, 993, 1353, 1489, 1490
NmeAIII GCCGAG 1 cut(s) 107
NruI TCGCGA 2 cut(s) 234, 312
NsiI ATGCAT 1 cut(s) 1467
NspI RCATGY 2 cut(s) 765, 976
NspV TTCGAA 1 cut(s) 384
PaeI GCATGC 1 cut(s) 765
PceI AGGCCT 1 cut(s) 1534
PciI ACATGT 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 330
PctI GAATGC 4 cut(s) 51, 1048, 1465, 1521
PfeI GAWTC 6 cut(s) 138, 381, 857, 1252, 1435, 1481
PflFI GACNNNGTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 1006
PkrI GCNGC 4 cut(s) 271, 1189, 1282, 1366
PleI GAGTC 2 cut(s) 170, 1108
PpsI GAGTC 2 cut(s) 170, 1108
PpuMI RGGWCCY 1 cut(s) 1488
PscI ACATGT 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 1488
Psp6I CCWGG 4 cut(s) 376, 1006, 1182, 1491
PspEI GGTNACC 1 cut(s) 658
PspGI CCWGG 4 cut(s) 376, 1006, 1182, 1491
PspN4I GGNNCC 6 cut(s) 876, 943, 993, 1353, 1489, 1490
PspPI GGNCC 3 cut(s) 123, 374, 1488
PspPPI RGGWCCY 1 cut(s) 1488
PsrI GAACNNNNNNTAC 4 cut(s) 585, 617, 762, 794
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 2 cut(s) 941, 991
PsyI GACNNNGTC 1 cut(s) 191
RruI TCGCGA 2 cut(s) 234, 312
RsaI GTAC 8 cut(s) 156, 216, 594, 755, 797, 876, 949, 999
RsaNI GTAC 8 cut(s) 155, 215, 593, 754, 796, 875, 948, 998
RseI CAYNNNNRTG 2 cut(s) 146, 1129
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 4 cut(s) 32, 704, 843, 1392
SatI GCNGC 4 cut(s) 270, 1188, 1281, 1365
Sau3AI GATC 7 cut(s) 274, 457, 941, 991, 1010, 1227, 1501
Sau96I GGNCC 3 cut(s) 123, 374, 1488
ScaI AGTACT 2 cut(s) 797, 949
SchI GAGTC 2 cut(s) 170, 1109
ScrFI CCNGG 6 cut(s) 199, 378, 889, 1008, 1184, 1493
SduI GDGCHC 2 cut(s) 225, 1123
SfaNI GCATC 5 cut(s) 565, 598, 725, 903, 1165
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 3 cut(s) 123, 374, 1488
SmiMI CAYNNNNRTG 2 cut(s) 146, 1129
SmlI CTYRAG 2 cut(s) 667, 813
SmoI CTYRAG 2 cut(s) 667, 813
SpeI ACTAGT 1 cut(s) 1000
SphI GCATGC 1 cut(s) 765
Sse9I AATT 3 cut(s) 624, 1169, 1268
SseBI AGGCCT 1 cut(s) 1534
SsiI CCGC 8 cut(s) 24, 49, 162, 241, 267, 270, 392, 680
SspMI CTAG 3 cut(s) 257, 1001, 1520
SstI GAGCTC 1 cut(s) 225
StuI AGGCCT 1 cut(s) 1534
StyD4I CCNGG 6 cut(s) 197, 376, 887, 1006, 1182, 1491
StyI CCWWGG 1 cut(s) 1235
TaaI ACNGT 2 cut(s) 1112, 1131
TaiI ACGT 4 cut(s) 195, 598, 619, 784
TaqI TCGA 3 cut(s) 384, 553, 589
TasI AATT 3 cut(s) 624, 1169, 1268
TatI WGTACW 4 cut(s) 753, 795, 947, 997
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 6 cut(s) 138, 381, 857, 1252, 1435, 1481
Tru1I TTAA 4 cut(s) 32, 704, 843, 1392
Tru9I TTAA 4 cut(s) 32, 704, 843, 1392
TscAI CASTG 4 cut(s) 415, 745, 1020, 1336
TseI GCWGC 3 cut(s) 1187, 1280, 1364
TspDTI ATGAA 3 cut(s) 486, 1244, 1392
TspGWI ACGGA 3 cut(s) 136, 142, 202
TspRI CASTG 4 cut(s) 415, 745, 1020, 1336
Tth111I GACNNNGTC 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 3 cut(s) 123, 374, 1488
XagI CCTNNNNNAGG 2 cut(s) 609, 723
XapI RAATTY 1 cut(s) 1169
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 2 cut(s) 765, 976
XmiI GTMKAC 2 cut(s) 479, 1474
XspI CTAG 3 cut(s) 257, 1001, 1520
ZrmI AGTACT 2 cut(s) 797, 949
Zsp2I ATGCAT 1 cut(s) 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.