Prupe.2G206400_v2.0.a1

Nodulin-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
24072574 .. 24074237
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G206400.1

Sequence Viewer

Length: 1659 bp
ATGAAGGGCCTTGTCCTCCAAGTCCTCACAGGAAGATGGCTCATGGTGTTTGCTTCATTTCTAATGATGGTCACTGCAGGCGCAAGCTACATGTTCGGCCTCTACTCCAACGACATAAAATTCGTGCTGGGATACGACCAAACGACACTCAACTTGATCAGCTTCTTCAAGGACTTAGGCGCCAACGTTGGCATCTTGTCCGGCCTGATCAACGAGGTAACACCCCCGTGGGTGGTCCTATCAATCGGTGCGGTCCTAAACTTTTTCGGGCACTTCATGATCTGGCTTGCAATAACACAAAAAATCCCAAAGCCTCGAGTCTGGCACATGTGCTTGTACATGTCCATAGGGGCCAATTCACATACTTTCACCAACACTGGAGCCCTGTCACATGTGTCAAGAACTTCCCAGAAAGCCGTGGTGTCGTGCCTTCTCAAAGGCTATACCGGCATAAGCGCAGCTGTGGTCTCACAGCTCTACCATGCTGCCTATGGTGATGACACAAAGTCTTTCACTTTGGTGGTGGCTTGGCTTCCAACTGCTCTCTCTTTGGTTTTCATTGGAACCATTCGGATCATCAAGGCTAGTCGCCGCCCGAACGAGCTCAGAGCTTTCTATAATTTCCTTTATATATCTCTTGACCTAGCAGCATTTTTGTTGATTATAATTGTTGTTGAGAAAAGGTTCAGGTTTAGCCAGAGCCAGTATGTTGGAAGTGCAGCTGTTGTGCTTTTTCTGCTCTTTTTACCACTTGCTGTGGTTATTATGGAAGAATATAAAGTTTGGCAGAGCAAGAGATCGATATCCCAGAATTTAGATTCTGATCCTTCACCTGTCAAAATTGTAACCAAAGGCCAAAACCCTGATGCCATTTCATCCCCAACATACAAAAAGGTTCCATCTTGGAACAAGGACATACTTAACCCACCAGAGATAGGTGAAGACTTCACAATATTGCAAACACTTTTCAGCATTGAAATGCTGACTTTGTTGTTGGCAACAGTTTGTGGCCTTGGAGGCACCATGACCATGATGGACAACTTGGGGCAGATTGGAACTTCTTTCGGCTACCCTTTGCGAAGCATAAGAAATTTCGTGTCGCTTACGAGCATTTGGAATTTTCTGGGACAGATTGTTGCTGGCATAGGCTCAGAAATGTTCATTATCAAGTACAAATGGCCTCGCCCTCTCATCTTCACTGCAGTTCTCTTGCTCTCATGTGTTGGCCATCTCCTAATTGCATTCAATGTCCCCTATGGCCTCTATGTTTCTTCAGTGGTTACTGGTTTCTGTTTTGGTGCACATTGGCCTTTGATTTTCACTCTAATTTCTGAACTTTTTGGCCTTAAATATTACTCCACTTTGTACAATTTTGGTGGGTTGGCTAGCCCAATTGGGCTGTATTTGCTCAATGTGAGGGTCACAGGGTATTTGTATGACAAGGAGGCTAAGAAGCAAATGGCAGCTTTGGGGCTTCAGAGAAAGGTGGGGGAGGAGTTGAATTGTGTTGGGGGGCAGTGCTTCAAATTGTCTTTCATTATACTTGCTGTGGTGGCCTTGTTTGGTGCACTTGTTTCACTGCTTTTGGTGGTTAGGACAAGGAAGTTTTATAAGAGTGATATTTATAAGAAGTTTAGAGATGAAGTGAGAGTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

61.39

Weight (kDa)

9.5

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016921)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 665, 1611, 1626
AccB1I GGYRCC 2 cut(s) 179, 1019
AciI CCGC 2 cut(s) 251, 592
AclI AACGTT 1 cut(s) 186
AclWI GGATC 2 cut(s) 581, 818
AcoI YGGCCR 1 cut(s) 1225
AcsI RAATTY 4 cut(s) 119, 811, 1090, 1117
AcuI CTGAAG 2 cut(s) 1257, 1460
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 338, 1172, 1367
AfiI CCNNNNNNNGG 2 cut(s) 232, 935
AflIII ACRYGT 4 cut(s) 90, 327, 339, 391
AgsI TTSAA 5 cut(s) 169, 977, 1246, 1501, 1525
AhdI GACNNNNNGTC 1 cut(s) 505
AleI CACNNNNGTG 2 cut(s) 226, 518
AluBI AGCT 8 cut(s) 87, 162, 461, 475, 604, 611, 722, 1466
AluI AGCT 8 cut(s) 87, 162, 461, 475, 604, 611, 722, 1466
Alw21I GWGCWC 3 cut(s) 606, 1303, 1570
Alw26I GTCTC 1 cut(s) 472
Alw44I GTGCAC 2 cut(s) 1299, 1566
AlwI GGATC 2 cut(s) 581, 818
Ama87I CYCGRG 1 cut(s) 315
ApaLI GTGCAC 2 cut(s) 1299, 1566
ApeKI GCWGC 5 cut(s) 458, 485, 647, 719, 1463
ApoI RAATTY 4 cut(s) 119, 811, 1090, 1117
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 3 cut(s) 83, 182, 458
AspS9I GGNCC 4 cut(s) 7, 235, 253, 351
AsuHPI GGTGA 4 cut(s) 361, 506, 822, 950
AsuNHI GCTAGC 1 cut(s) 1385
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 235, 253
BaeGI GKGCMC 3 cut(s) 273, 1303, 1570
BalI TGGCCA 1 cut(s) 1227
BanI GGYRCC 2 cut(s) 179, 1019
BanII GRGCYC 2 cut(s) 385, 606
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 3 cut(s) 606, 1303, 1570
BbvI GCAGC 5 cut(s) 470, 472, 659, 731, 1475
BccI CCATC 5 cut(s) 30, 61, 907, 1027, 1236
BceAI ACGGC 1 cut(s) 401
BciVI GTATCC 1 cut(s) 125
BclI TGATCA 2 cut(s) 156, 207
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 3 cut(s) 585, 644, 1386
BfmI CTRYAG 2 cut(s) 75, 1200
BfoI RGCGCY 1 cut(s) 183
BfuI GTATCC 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 1017
BisI GCNGC 6 cut(s) 459, 486, 592, 648, 720, 1464
BlsI GCNGC 6 cut(s) 460, 487, 593, 649, 721, 1465
Bme18I GGWCC 2 cut(s) 235, 253
BmeRI GACNNNNNGTC 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 4 cut(s) 7, 235, 253, 351
BmiI GGNNCC 6 cut(s) 181, 352, 382, 565, 897, 1021
BmsI GCATC 2 cut(s) 201, 856
BmtI GCTAGC 1 cut(s) 1389
BpiI GAAGAC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 399
Bsa29I ATCGAT 1 cut(s) 800
BsaBI GATNNNNATC 2 cut(s) 802, 822
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 3 cut(s) 227, 417, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 935
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 382, 703, 1288
Bse8I GATNNNNATC 2 cut(s) 802, 822
BseCI ATCGAT 1 cut(s) 800
BseDI CCNNGG 3 cut(s) 227, 417, 1012
BseGI GGATG 1 cut(s) 875
BseJI GATNNNNATC 2 cut(s) 802, 822
BseLI CCNNNNNNNGG 2 cut(s) 232, 935
BseMII CTCAG 2 cut(s) 619, 1164
BseNI ACTGG 3 cut(s) 382, 703, 1288
BseRI GAGGAG 1 cut(s) 1508
BseSI GKGCMC 3 cut(s) 273, 1303, 1570
BseXI GCAGC 5 cut(s) 470, 472, 659, 731, 1475
BseYI CCCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 738
BshNI GGYRCC 2 cut(s) 179, 1019
BshVI ATCGAT 1 cut(s) 800
BsiHKAI GWGCWC 3 cut(s) 606, 1303, 1570
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 2 cut(s) 201, 447
BslFI GGGAC 2 cut(s) 1140, 1235
BslI CCNNNNNNNGG 2 cut(s) 232, 935
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 1140, 1235
BsmI GAATGC 1 cut(s) 1241
Bso31I GGTCTC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 5 cut(s) 273, 385, 606, 1303, 1570
Bsp1407I TGTACA 2 cut(s) 336, 1365
Bsp143I GATC 6 cut(s) 156, 207, 279, 573, 797, 823
BspACI CCGC 2 cut(s) 251, 592
BspCNI CTCAG 2 cut(s) 618, 1163
BspDI ATCGAT 1 cut(s) 800
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 6 cut(s) 181, 352, 382, 565, 897, 1021
BspMAI CTGCAG 2 cut(s) 79, 1204
BspOI GCTAGC 1 cut(s) 1389
BspPI GGATC 2 cut(s) 581, 818
BspT107I GGYRCC 2 cut(s) 179, 1019
BspTNI GGTCTC 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 2 cut(s) 336, 1365
BsrI ACTGG 3 cut(s) 382, 703, 1288
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 227, 417, 1012
BssMI GATC 6 cut(s) 156, 207, 279, 573, 797, 823
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 1012
Bst4CI ACNGT 1 cut(s) 1003
BstACI GRCGYC 1 cut(s) 180
BstAUI TGTACA 2 cut(s) 336, 1365
BstC8I GCNNGC 5 cut(s) 79, 85, 288, 1141, 1387
BstDEI CTNAG 5 cut(s) 175, 605, 1150, 1449, 1656
BstDSI CCRYGG 2 cut(s) 227, 417
BstF5I GGATG 1 cut(s) 875
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 3 cut(s) 83, 182, 458
BstKTI GATC 6 cut(s) 159, 210, 282, 576, 800, 826
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 6 cut(s) 156, 207, 279, 573, 797, 823
BstMWI GCNNNNNNNGC 5 cut(s) 447, 736, 1017, 1405, 1553
BstNSI RCATGY 4 cut(s) 94, 331, 343, 395
BstSFI CTRYAG 2 cut(s) 75, 1200
BstSLI GKGCMC 3 cut(s) 273, 1303, 1570
BstV1I GCAGC 5 cut(s) 470, 472, 659, 731, 1475
BstV2I GAAGAC 1 cut(s) 948
BstXI CCANNNNNNTGG 1 cut(s) 710
Bsu15I ATCGAT 1 cut(s) 800
BsuI GTATCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 800
BtgI CCRYGG 2 cut(s) 227, 417
BtsCI GGATG 1 cut(s) 875
BtsI GCAGTG 4 cut(s) 72, 1197, 1523, 1577
BtsIMutI CAGTG 6 cut(s) 72, 375, 1197, 1281, 1523, 1577
Cac8I GCNNGC 5 cut(s) 79, 85, 288, 1141, 1387
CciI TCATGA 1 cut(s) 276
CfoI GCGC 3 cut(s) 83, 182, 458
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 4 cut(s) 7, 235, 253, 351
ClaI ATCGAT 1 cut(s) 800
Csp6I GTAC 3 cut(s) 337, 1171, 1366
CspCI CAANNNNNGTGG 2 cut(s) 1357, 1392
CviQI GTAC 3 cut(s) 337, 1171, 1366
DdeI CTNAG 5 cut(s) 175, 605, 1150, 1449, 1656
DinI GGCGCC 1 cut(s) 181
DpnI GATC 6 cut(s) 158, 209, 281, 575, 799, 825
DpnII GATC 6 cut(s) 156, 207, 279, 573, 797, 823
DriI GACNNNNNGTC 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 1225
Eam1105I GACNNNNNGTC 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 1012
Eco24I GRGCYC 2 cut(s) 385, 606
Eco31I GGTCTC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 804
Eco47I GGWCC 2 cut(s) 235, 253
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 1257, 1460
Eco88I CYCGRG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 7
EcoRV GATATC 1 cut(s) 804
EcoT14I CCWWGG 1 cut(s) 1012
EcoT38I GRGCYC 2 cut(s) 385, 606
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 1012
FaqI GGGAC 2 cut(s) 1140, 1235
FbaI TGATCA 2 cut(s) 156, 207
Fnu4HI GCNGC 6 cut(s) 459, 486, 592, 648, 720, 1464
FokI GGATG 1 cut(s) 862
FriOI GRGCYC 2 cut(s) 385, 606
Fsp4HI GCNGC 6 cut(s) 459, 486, 592, 648, 720, 1464
FspBI CTAG 3 cut(s) 585, 644, 1386
GlaI GCGC 3 cut(s) 82, 181, 457
GluI GCNGC 6 cut(s) 459, 486, 592, 648, 720, 1464
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 183
HapII CCGG 2 cut(s) 201, 447
HhaI GCGC 3 cut(s) 83, 182, 458
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 3 cut(s) 81, 180, 456
HinP1I GCGC 3 cut(s) 81, 180, 456
HinfI GANTC 2 cut(s) 318, 818
HpaII CCGG 2 cut(s) 201, 447
HphI GGTGA 4 cut(s) 361, 506, 822, 950
Hpy166II GTNNAC 2 cut(s) 1301, 1568
Hpy188I TCNGA 6 cut(s) 573, 608, 823, 1153, 1333, 1479
Hpy188III TCNNGA 3 cut(s) 277, 399, 638
Hpy8I GTNNAC 2 cut(s) 1301, 1568
HpyAV CCTTC 2 cut(s) 440, 837
HpyCH4III ACNGT 1 cut(s) 1003
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 8 cut(s) 77, 290, 719, 958, 1202, 1241, 1301, 1568
HpyF10VI GCNNNNNNNGC 5 cut(s) 447, 736, 1017, 1405, 1553
HpyF3I CTNAG 5 cut(s) 175, 605, 1150, 1449, 1656
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 3 cut(s) 81, 180, 456
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 2 cut(s) 156, 207
Kzo9I GATC 6 cut(s) 156, 207, 279, 573, 797, 823
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 5 cut(s) 470, 472, 659, 731, 1475
LweI GCATC 2 cut(s) 201, 856
MaeI CTAG 3 cut(s) 585, 644, 1386
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 6 cut(s) 70, 217, 387, 844, 1279, 1420
MalI GATC 6 cut(s) 158, 209, 281, 575, 799, 825
MboI GATC 6 cut(s) 156, 207, 279, 573, 797, 823
MboII GAAGA 6 cut(s) 45, 157, 782, 953, 1186, 1263
MfeI CAATTG 1 cut(s) 1392
MhlI GDGCHC 5 cut(s) 273, 385, 606, 1303, 1570
MlsI TGGCCA 1 cut(s) 1227
MluNI TGGCCA 1 cut(s) 1227
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 3 cut(s) 132, 560, 691
Mox20I TGGCCA 1 cut(s) 1227
MroXI GAANNNNTTC 1 cut(s) 683
MscI TGGCCA 1 cut(s) 1227
MseI TTAA 2 cut(s) 921, 1347
MslI CAYNNNNRTG 4 cut(s) 226, 518, 977, 1028
Msp20I TGGCCA 1 cut(s) 1227
MspA1I CMGCKG 2 cut(s) 461, 722
MspI CCGG 2 cut(s) 201, 447
MunI CAATTG 1 cut(s) 1392
Mva1269I GAATGC 1 cut(s) 1241
MwoI GCNNNNNNNGC 5 cut(s) 447, 736, 1017, 1405, 1553
NarI GGCGCC 1 cut(s) 180
NdeII GATC 6 cut(s) 156, 207, 279, 573, 797, 823
NheI GCTAGC 1 cut(s) 1385
NlaIV GGNNCC 6 cut(s) 181, 352, 382, 565, 897, 1021
NmuCI GTSAC 3 cut(s) 70, 387, 1420
NspI RCATGY 4 cut(s) 94, 331, 343, 395
OliI CACNNNNGTG 2 cut(s) 226, 518
PaeR7I CTCGAG 1 cut(s) 315
PagI TCATGA 1 cut(s) 276
PciI ACATGT 4 cut(s) 90, 327, 339, 391
PctI GAATGC 1 cut(s) 1241
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 818
PkrI GCNGC 6 cut(s) 460, 487, 593, 649, 721, 1465
PleI GAGTC 1 cut(s) 326
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 4 cut(s) 90, 327, 339, 391
PsiI TTATAA 3 cut(s) 665, 1611, 1626
Psp124BI GAGCTC 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 6 cut(s) 181, 352, 382, 565, 897, 1021
PspPI GGNCC 4 cut(s) 7, 235, 253, 351
PspXI VCTCGAGB 1 cut(s) 315
PstI CTGCAG 2 cut(s) 79, 1204
PvuII CAGCTG 2 cut(s) 461, 722
RsaI GTAC 3 cut(s) 338, 1172, 1367
RsaNI GTAC 3 cut(s) 337, 1171, 1366
RseI CAYNNNNRTG 4 cut(s) 226, 518, 977, 1028
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 921, 1347
SatI GCNGC 6 cut(s) 459, 486, 592, 648, 720, 1464
Sau3AI GATC 6 cut(s) 156, 207, 279, 573, 797, 823
Sau96I GGNCC 4 cut(s) 7, 235, 253, 351
SchI GAGTC 1 cut(s) 327
SduI GDGCHC 5 cut(s) 273, 385, 606, 1303, 1570
SfaNI GCATC 2 cut(s) 201, 856
SfcI CTRYAG 2 cut(s) 75, 1200
SfoI GGCGCC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 235, 253
SlaI CTCGAG 1 cut(s) 315
SmiMI CAYNNNNRTG 4 cut(s) 226, 518, 977, 1028
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SsiI CCGC 2 cut(s) 251, 592
SspDI GGCGCC 1 cut(s) 179
SspI AATATT 2 cut(s) 954, 1352
SspMI CTAG 3 cut(s) 585, 644, 1386
SstI GAGCTC 1 cut(s) 606
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 1 cut(s) 1003
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 316, 800
TatI WGTACW 3 cut(s) 336, 1170, 1365
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 2 cut(s) 921, 1347
Tru9I TTAA 2 cut(s) 921, 1347
TscAI CASTG 6 cut(s) 79, 382, 1204, 1281, 1523, 1584
TseFI GTSAC 3 cut(s) 70, 387, 1420
TseI GCWGC 5 cut(s) 458, 485, 647, 719, 1463
Tsp45I GTSAC 3 cut(s) 70, 387, 1420
TspDTI ATGAA 8 cut(s) 17, 45, 265, 547, 864, 1150, 1525, 1656
TspRI CASTG 6 cut(s) 79, 382, 1204, 1281, 1523, 1584
VneI GTGCAC 2 cut(s) 1299, 1566
VpaK11BI GGWCC 2 cut(s) 235, 253
XapI RAATTY 4 cut(s) 119, 811, 1090, 1117
XceI RCATGY 4 cut(s) 94, 331, 343, 395
XcmI CCANNNNNNNNNTGG 2 cut(s) 488, 1030
XhoI CTCGAG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 3 cut(s) 585, 644, 1386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.