FvH4_7g19600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016062
Physical Location & Seq
Forward (+)
16111187 .. 16114839
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19600.t1

Sequence Viewer

Length: 588 bp
ATGGCACCCATCACCACCCTTATCTGCTTCATTCTTTCTCAGTTTCGATTTCTCTTCACCCCTCAGTACTACTCGCCAACATTCCACTACTTGGGGCATGATCAGAATCCTGGTTTATACACCCTTGGAGTCTTACCCTTTCTGGCGGTGGAGCTTGCTGCATACCTTATTCAGGCCATGTGTGTGCACGCAGAGGTCTTGATTCGTGAGGCTTGCGGGTCTGTTCTTCCTCTTGCACAATGGCAATTGAGGTTTGCTACCCACCTTTCTAGCATGACTCCACCGGAGTACTTGAAGCTCACCTTTAAAAATCAGAAGAGAAGAAAAAAGATGCATCTATGGCCCTCAACGATAATCAGAGACTCCTTCAAGCTTGAATACTTGAGAAAGATGGAATGGAACCTTCACAGAATGAACAGCCAAAAAGCCTGGTCAAGTTCAGCCAATAAAAAACTGTTGGATACCCAGAAAGGTGCTTCAGGCAATGAAAATGTGGCAGAAATACCCTACTCAAAGGCTCATCCTACACAGATGCTTCTGTCCTTTTGTCTCTGCTGTGGAGCGTTTGGAGATCATGAAGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.42

Weight (kDa)

9.03

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 2 cut(s) 146, 216
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 68, 290
AfiI CCNNNNNNNGG 2 cut(s) 91, 172
AgsI TTSAA 3 cut(s) 295, 370, 377
AjnI CCWGG 2 cut(s) 109, 428
AluBI AGCT 3 cut(s) 154, 298, 373
AluI AGCT 3 cut(s) 154, 298, 373
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 354, 554
Alw44I GTGCAC 1 cut(s) 185
AoxI GGCC 2 cut(s) 174, 341
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 4, 49, 292
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 145
BccI CCATC 2 cut(s) 17, 385
BciT130I CCWGG 2 cut(s) 111, 430
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 354, 554
BfaI CTAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmcAI AGTACT 2 cut(s) 68, 290
Bme1390I CCNGG 2 cut(s) 111, 430
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 6, 401
BmrFI CCNGG 2 cut(s) 111, 430
BmsI GCATC 3 cut(s) 321, 343, 522
BpuEI CTTGAG 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 172
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 111, 430
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 520
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 91, 172
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 53, 77
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 2 cut(s) 176, 343
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 91, 172
BsmAI GTCTC 2 cut(s) 354, 554
BsnI GGCC 2 cut(s) 176, 343
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 100, 571
BspACI CCGC 2 cut(s) 146, 216
BspANI GGCC 2 cut(s) 176, 343
BspCNI CTCAG 2 cut(s) 52, 76
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 6, 401
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 100, 571
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 111, 430
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 3 cut(s) 59, 311, 573
BstC8I GCNNGC 3 cut(s) 156, 189, 214
BstDEI CTNAG 2 cut(s) 39, 63
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 520
BstKTI GATC 2 cut(s) 103, 574
BstMAI GTCTC 2 cut(s) 354, 554
BstMBI GATC 2 cut(s) 100, 571
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 2 cut(s) 111, 430
BstSCI CCNGG 2 cut(s) 109, 428
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 145
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 2 cut(s) 176, 343
BtsCI GGATG 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 156, 189, 214
CciI TCATGA 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 67, 289
CviAII CATG 4 cut(s) 98, 178, 274, 575
CviQI GTAC 2 cut(s) 67, 289
DdeI CTNAG 2 cut(s) 39, 63
DpnI GATC 2 cut(s) 102, 573
DpnII GATC 2 cut(s) 100, 571
DraI TTTAAA 1 cut(s) 307
Eam1104I CTCTTC 3 cut(s) 59, 311, 573
EarI CTCTTC 3 cut(s) 59, 311, 573
Eco130I CCWWGG 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 109, 428
EcoT14I CCWWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 4 cut(s) 101, 181, 277, 578
FaiI YATR 7 cut(s) 99, 118, 163, 179, 275, 340, 576
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 4 cut(s) 97, 177, 273, 574
FauI CCCGC 1 cut(s) 209
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 176, 343
HapII CCGG 1 cut(s) 284
Hin1II CATG 4 cut(s) 101, 181, 277, 578
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 106, 129, 202, 277, 362
HpaII CCGG 1 cut(s) 284
HphI GGTGA 3 cut(s) 4, 49, 292
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 105, 315, 359
Hpy188III TCNNGA 3 cut(s) 199, 206, 575
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 376, 413
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 161, 187, 236, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 39, 63
Hsp92II CATG 4 cut(s) 101, 181, 277, 578
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 100, 571
LmnI GCTCC 2 cut(s) 151, 560
LpnPI CCDG 9 cut(s) 96, 123, 128, 158, 297, 415, 442, 465, 479
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 3 cut(s) 321, 343, 522
MaeI CTAG 1 cut(s) 270
MalI GATC 2 cut(s) 102, 573
MboI GATC 2 cut(s) 100, 571
MboII GAAGA 4 cut(s) 46, 218, 328, 333
MfeI CAATTG 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 245
MlyI GAGTC 3 cut(s) 138, 271, 356
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 6 cut(s) 72, 187, 202, 240, 243, 355
Mph1103I ATGCAT 1 cut(s) 336
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 111, 430
MunI CAATTG 1 cut(s) 245
MvaI CCWGG 2 cut(s) 111, 430
MwoI GCNNNNNNNGC 1 cut(s) 340
NdeII GATC 2 cut(s) 100, 571
NlaIII CATG 4 cut(s) 101, 181, 277, 578
NlaIV GGNNCC 2 cut(s) 6, 401
NsiI ATGCAT 1 cut(s) 336
PagI TCATGA 1 cut(s) 574
PfeI GAWTC 2 cut(s) 106, 202
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 3 cut(s) 137, 271, 356
PpsI GAGTC 3 cut(s) 137, 271, 356
Psp6I CCWGG 2 cut(s) 109, 428
PspGI CCWGG 2 cut(s) 109, 428
PspN4I GGNNCC 2 cut(s) 6, 401
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 2 cut(s) 68, 290
RsaNI GTAC 2 cut(s) 67, 289
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 100, 571
Sau96I GGNCC 1 cut(s) 342
ScaI AGTACT 2 cut(s) 68, 290
SchI GAGTC 3 cut(s) 138, 271, 356
ScrFI CCNGG 2 cut(s) 111, 430
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 3 cut(s) 321, 343, 522
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 1 cut(s) 245
SsiI CCGC 2 cut(s) 146, 216
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 109, 428
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 245
TatI WGTACW 2 cut(s) 66, 288
TfiI GAWTC 2 cut(s) 106, 202
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 19, 428, 501
Van91I CCANNNNNTGG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 170
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 2 cut(s) 68, 290
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.