Rroxscaffold_4G00293200

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
13461704 .. 13465648
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293200.1

Sequence Viewer

Length: 279 bp
ATGCATCTATTGCCCTCAAGGATGATCAGAGACTCCTTCAAGCTTGATTACCTCAGAAGGCTGGAGTGGAACCTCCAAAGAATGAATAGCCAAGAAGCATCATCAAGTTCAGTCAATCAGAAACTGATGGACACCCAGAATGGTGCTTCAGGCAATGAAGAAGTGCCAGAAATACCAAATTCAAAGGATCATATGCAGATGCTTCTGTCTTACTGTTTCTGCTGCGGAGCATTCGGGATCACGAGGAGAACTGATAAATCCTTAGGAACTGAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.61

Weight (kDa)

6.71

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 195, 245
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 132
AgsI TTSAA 2 cut(s) 40, 183
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 195, 245
AlwNI CAGNNNCTG 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 178
AxyI CCTNAGG 1 cut(s) 262
BauI CACGAG 1 cut(s) 241
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 121
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 24
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 3 cut(s) 13, 107, 189
BpmI CTGGAG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 160
BseGI GGATG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 230
Bsp143I GATC 3 cut(s) 24, 187, 237
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 195, 245
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 3 cut(s) 24, 187, 237
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 53, 262
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 3 cut(s) 27, 190, 240
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 24, 187, 237
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 124
CviJI RGCY 3 cut(s) 43, 61, 90
CviKI_1 RGCY 3 cut(s) 43, 61, 90
DdeI CTNAG 2 cut(s) 53, 262
DpnI GATC 3 cut(s) 26, 189, 239
DpnII GATC 3 cut(s) 24, 187, 237
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 2 cut(s) 192, 194
FauNDI CATATG 1 cut(s) 192
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 29, 56, 120
Hpy188III TCNNGA 2 cut(s) 235, 241
HpyAV CCTTC 2 cut(s) 46, 51
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 4, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 53, 262
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 3 cut(s) 24, 187, 237
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 4 cut(s) 47, 135, 149, 180
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 3 cut(s) 13, 107, 189
MalI GATC 3 cut(s) 26, 189, 239
MboI GATC 3 cut(s) 24, 187, 237
MboII GAAGA 1 cut(s) 170
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 4 cut(s) 25, 62, 83, 237
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 192
NdeII GATC 3 cut(s) 24, 187, 237
NlaIV GGNNCC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 124
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 3 cut(s) 24, 187, 237
SchI GAGTC 1 cut(s) 26
SetI ASST 3 cut(s) 45, 54, 75
SfaNI GCATC 3 cut(s) 13, 107, 189
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 225
SspI AATATT 1 cut(s) 275
TaaI ACNGT 1 cut(s) 215
TasI AATT 1 cut(s) 178
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 98, 171
XapI RAATTY 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.