pycom01g13560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016062
Physical Location & Seq
Forward (+)
13995980 .. 13997734
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13560.2

Sequence Viewer

Length: 330 bp
ATGCATCTATGGCCGTCGGCGACGATCAGAGACTCCTTCAAGCTCGATTACCTGAGGAAGCTCGACTGGAACCTCCAGAGGATGAAAAGCGAGAAGGAATCACAAAAATCAGTCAAGCAGAACCTGCTCGACGGCAAAGACGGCGGAACCGCCAAACAGTTGGATAGCCCACGAGGCCAAGTCAACGGAAAAGCGGCGGACTTGACCAATCCAAAGGCTCATGGAAGAGATAGAATGGTCGCTGGACTCTGCGGAGAGACTCTGATGCTTCTCTCTTGCTGCTTCTGCTGTGGAGCTTGCGCAGACGAAGAGGCTGATCTCATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

7.58

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 5 cut(s) 144, 150, 194, 197, 252
AcoI YGGCCR 1 cut(s) 11
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 3 cut(s) 43, 61, 296
AluI AGCT 3 cut(s) 43, 61, 296
Alw26I GTCTC 2 cut(s) 24, 251
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 2 cut(s) 11, 175
ApeKI GCWGC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 53
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 148, 157
BcoDI GTCTC 2 cut(s) 24, 251
BfuAI ACCTGC 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 195, 280
BlsI GCNGC 2 cut(s) 196, 281
BmiI GGNNCC 2 cut(s) 71, 148
BmsI GCATC 2 cut(s) 13, 255
BpmI CTGGAG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 2 cut(s) 13, 177
BsmAI GTCTC 2 cut(s) 24, 251
BsnI GGCC 2 cut(s) 13, 177
Bsp143I GATC 2 cut(s) 24, 316
BspACI CCGC 5 cut(s) 144, 150, 194, 197, 252
BspANI GGCC 2 cut(s) 13, 177
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 71, 148
BspMI ACCTGC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 71
BssMI GATC 2 cut(s) 24, 316
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 220, 303
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 2 cut(s) 27, 319
BstMAI GTCTC 2 cut(s) 24, 251
BstMBI GATC 2 cut(s) 24, 316
BstMWI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
BstV1I GCAGC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 2 cut(s) 13, 177
BtsCI GGATG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 298
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 302
CviAII CATG 1 cut(s) 221
CviJI RGCY 8 cut(s) 13, 43, 61, 168, 177, 218, 296, 314
CviKI_1 RGCY 8 cut(s) 13, 43, 61, 168, 177, 218, 296, 314
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 26, 318
DpnII GATC 2 cut(s) 24, 316
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 220, 303
EarI CTCTTC 2 cut(s) 220, 303
EciI GGCGGA 2 cut(s) 159, 212
Eco81I CCTNAGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 10, 222
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 195, 280
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 195, 280
FspI TGCGCA 1 cut(s) 301
GlaI GCGC 1 cut(s) 301
GluI GCNGC 2 cut(s) 195, 280
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 2 cut(s) 13, 177
HhaI GCGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 224
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 4 cut(s) 32, 98, 246, 259
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 29, 264
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 3 cut(s) 19, 25, 134
HpyAV CCTTC 2 cut(s) 46, 88
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 224
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 24, 316
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 5 cut(s) 52, 65, 89, 137, 228
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 13, 255
MalI GATC 2 cut(s) 26, 318
MboI GATC 2 cut(s) 24, 316
MboII GAAGA 2 cut(s) 237, 320
MlyI GAGTC 3 cut(s) 26, 240, 253
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 48, 72, 83, 167, 304
Mph1103I ATGCAT 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
NdeII GATC 2 cut(s) 24, 316
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 71, 148
NsbI TGCGCA 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 196, 281
PleI GAGTC 3 cut(s) 26, 240, 253
PpsI GAGTC 3 cut(s) 26, 240, 253
PspN4I GGNNCC 2 cut(s) 71, 148
PstNI CAGNNNCTG 1 cut(s) 124
SatI GCNGC 2 cut(s) 195, 280
Sau3AI GATC 2 cut(s) 24, 316
SchI GAGTC 3 cut(s) 26, 240, 253
SetI ASST 6 cut(s) 45, 54, 63, 75, 126, 298
SfaNI GCATC 2 cut(s) 13, 255
SsiI CCGC 5 cut(s) 144, 150, 194, 197, 252
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 45, 63, 129
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 98
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.