Rh1CG295300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016062
Physical Location & Seq
Forward (+)
56841326 .. 56843667
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG295300.1

Sequence Viewer

Length: 423 bp
ATGCATCTATGGCCCTCGACGATGATCAGAGACTCCTTCAAGCTTGATTACCTCAGAAGGCTGGAATGGAACCTCCAAAGAATGAATAGCCAAAAACCATCATCAAGTTCAGTCAATCAGAAACTGCTGGACACCCAGAATGGTGCTTCAGGCAATGAAGAAGTGCCAGAAATACCAAATTCAAAGGATCATATGCAGATGCTTCTGTCTTACTGTTTCTGCTGCGGAGCACCAAGACCAATCCTTGCACATGAATATTCATCGCCTTTCGGCCTGAACTTTCGCCCCGACTCCCCCTCCATGGACAGTCCTTGCCGAGGAAACCTTAAGTTTTCGGGGCATTGGACTCTCGCCAATGTTTTCCTTCCTAAAACCGGCATTTCTCCCTTCGGAGCTAGAAGCCCCCCCCCCGGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.7

Weight (kDa)

8.78

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 6 cut(s) 301, 317, 374, 410, 411, 412
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 2 cut(s) 40, 183
AluBI AGCT 2 cut(s) 43, 395
AluI AGCT 2 cut(s) 43, 395
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 2 cut(s) 11, 271
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 411, 412
AvaI CYCGRG 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 106
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 2 cut(s) 411, 412
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 411, 412
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 411, 412
BmsI GCATC 2 cut(s) 13, 189
BpuMI CCSGG 2 cut(s) 411, 412
BsaJI CCNNGG 5 cut(s) 300, 316, 409, 410, 411
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 301, 317, 374, 410, 411, 412
Bse118I RCCGGY 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 300, 316, 409, 410, 411
BseLI CCNNNNNNNGG 6 cut(s) 301, 317, 374, 410, 411, 412
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 13, 273
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 2 cut(s) 375, 411
BslI CCNNNNNNNGG 6 cut(s) 301, 317, 374, 410, 411, 412
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 13, 273
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 24, 187
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 13, 273
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 5 cut(s) 300, 316, 409, 410, 411
BssMI GATC 2 cut(s) 24, 187
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 215, 308
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 315
BstKTI GATC 2 cut(s) 27, 190
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 24, 187
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 409, 410
BstV1I GCAGC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 13, 273
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 12
Cfr9I CCCGGG 1 cut(s) 410
CviAII CATG 2 cut(s) 251, 301
CviJI RGCY 7 cut(s) 13, 43, 61, 90, 273, 395, 402
CviKI_1 RGCY 7 cut(s) 13, 43, 61, 90, 273, 395, 402
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 26, 189
DpnII GATC 2 cut(s) 24, 187
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 2 cut(s) 254, 304
FaiI YATR 5 cut(s) 10, 192, 194, 252, 302
FatI CATG 2 cut(s) 250, 300
FauNDI CATATG 1 cut(s) 192
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 2 cut(s) 13, 273
HapII CCGG 2 cut(s) 375, 411
Hin1II CATG 2 cut(s) 254, 304
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 32, 290, 346
HpaII CCGG 2 cut(s) 375, 411
Hpy188I TCNGA 5 cut(s) 29, 56, 120, 392, 422
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 46, 51, 374, 397
HpyCH4III ACNGT 2 cut(s) 215, 308
HpyCH4V TGCA 3 cut(s) 4, 196, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 2 cut(s) 254, 304
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 187
LmnI GCTCC 2 cut(s) 227, 392
LpnPI CCDG 7 cut(s) 47, 113, 135, 149, 180, 287, 388
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 13, 189
MaeI CTAG 1 cut(s) 396
MalI GATC 2 cut(s) 26, 189
MboI GATC 2 cut(s) 24, 187
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 1 cut(s) 178
MlyI GAGTC 3 cut(s) 26, 284, 340
MnlI CCTC 5 cut(s) 25, 62, 83, 307, 311
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 327
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 375, 411
MspR9I CCNGG 2 cut(s) 411, 412
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 411, 412
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 192
NdeII GATC 2 cut(s) 24, 187
NlaIII CATG 2 cut(s) 254, 304
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 3 cut(s) 26, 284, 340
PpsI GAGTC 3 cut(s) 26, 284, 340
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 124
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 2 cut(s) 24, 187
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 3 cut(s) 26, 284, 340
ScrFI CCNGG 2 cut(s) 411, 412
SduI GDGCHC 1 cut(s) 232
SetI ASST 5 cut(s) 45, 54, 75, 327, 397
SfaNI GCATC 2 cut(s) 13, 189
SmaI CCCGGG 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 225
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 409, 410
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 215, 308
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 178
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 4 cut(s) 98, 171, 249, 267
TspMI CCCGGG 1 cut(s) 410
Vha464I CTTAAG 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 1 cut(s) 178
XmaI CCCGGG 1 cut(s) 410
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.