MD01G1108600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016062
Physical Location & Seq
Forward (+)
22151989 .. 22155600
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1108600.v1.1.491

Sequence Viewer

Length: 318 bp
ATGCATCTATGGCCGTCGGCGACGATCAGAGACTCCTTCAAGCTCGATTACCTGAGGAAGCTCGACTGGAACCTCCAGAGGATGAAAAGCGAGAAGGAATCACAAAAATCAGTCAAGCAGAACCTGCTCGATGGCCAAGACGGCGGAGCCGCCAAACAGTTGGATAGCCCACGAGGCCAAGTCAACGGAAAAGCGGCGGACTTGACCAATCCAAAGGCTCATGGAAGAGATAGAATGGTCGCTGGACTCTGCGGAGAGACTCTGATGCTTCTCTCTTGCTGCTTCTGCTGTGGAGTGTGCCTTTGGTTTGATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

8.51

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 5 cut(s) 144, 150, 194, 197, 252
AcoI YGGCCR 2 cut(s) 11, 133
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 43, 61
AluI AGCT 2 cut(s) 43, 61
Alw26I GTCTC 2 cut(s) 24, 251
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 3 cut(s) 11, 133, 175
ApeKI GCWGC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 53
BalI TGGCCA 1 cut(s) 135
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 24, 251
BfaI CTAG 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 132
BglI GCCNNNNNGGC 2 cut(s) 141, 174
BisI GCNGC 3 cut(s) 150, 195, 280
BlsI GCNGC 3 cut(s) 151, 196, 281
BmiI GGNNCC 2 cut(s) 71, 148
BmsI GCATC 2 cut(s) 13, 255
BpmI CTGGAG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 3 cut(s) 13, 135, 177
BsmAI GTCTC 2 cut(s) 24, 251
BsnI GGCC 3 cut(s) 13, 135, 177
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 5 cut(s) 144, 150, 194, 197, 252
BspANI GGCC 3 cut(s) 13, 135, 177
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 71, 148
BspMI ACCTGC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 71
BssMI GATC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 2 cut(s) 24, 251
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
BstV1I GCAGC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 3 cut(s) 13, 135, 177
BtsCI GGATG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 124
CviAII CATG 1 cut(s) 221
CviJI RGCY 8 cut(s) 13, 43, 61, 135, 149, 168, 177, 218
CviKI_1 RGCY 8 cut(s) 13, 43, 61, 135, 149, 168, 177, 218
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 11, 133
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EciI GGCGGA 2 cut(s) 159, 212
Eco81I CCTNAGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 10, 222
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 150, 195, 280
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 150, 195, 280
FspBI CTAG 1 cut(s) 316
GluI GCNGC 3 cut(s) 150, 195, 280
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 13, 135, 177
Hin1II CATG 1 cut(s) 224
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 4 cut(s) 32, 98, 246, 259
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 29, 264
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 19, 25
HpyAV CCTTC 2 cut(s) 46, 88
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 5 cut(s) 52, 65, 89, 137, 228
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 13, 255
MaeI CTAG 1 cut(s) 316
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 3 cut(s) 26, 240, 253
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 48, 72, 83, 167
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 10, 124, 141, 174, 285
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 71, 148
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 151, 196, 281
PleI GAGTC 3 cut(s) 26, 240, 253
PpsI GAGTC 3 cut(s) 26, 240, 253
PspN4I GGNNCC 2 cut(s) 71, 148
PstNI CAGNNNCTG 1 cut(s) 124
SatI GCNGC 3 cut(s) 150, 195, 280
Sau3AI GATC 1 cut(s) 24
SchI GAGTC 3 cut(s) 26, 240, 253
SetI ASST 5 cut(s) 45, 54, 63, 75, 126
SfaNI GCATC 2 cut(s) 13, 255
SsiI CCGC 5 cut(s) 144, 150, 194, 197, 252
SspMI CTAG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 45, 63, 129
TauI GCSGC 2 cut(s) 152, 197
TfiI GAWTC 1 cut(s) 98
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 201
XspI CTAG 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.