RLG00000027570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016062
Physical Location & Seq
Reverse (-)
12794076 .. 12796040
1965 bp
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UTR
Exon/CDS
Intron
RLM00000027570

Sequence Viewer

Length: 342 bp
ATGGAGGCGGCGTGTAACATAGTTGGAGGTTGCCGAGAGCCCGAGATATTGCTAAATGTGGGTCAAGTGGTTAACGTAGCTGGATGGAGGCGAAGAGAGAAAAAGATGCATCTATTGCCCTCAAGGATGATCAGAGACTCCTTCAAGCTTGATTACCTCAGAAGGCTGGAATGGAACCTCCAAAGAATGAATAGCCAAGAAGCATCATCAAGTTCAGTCAATCAGAAACTGATGGACACCCAGAATGGTGCTTCAGGCAACGAAGAAGTGCCAGAAATACCAAATTCAAAGGATCATACGCAGATGCTTCTGTCTTACTGTTTCTGCCGCGGAGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.86

Weight (kDa)

8.43

Isoelectric Point (pI)

64.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AciI CCGC 3 cut(s) 8, 328, 330
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 145, 288
AluBI AGCT 3 cut(s) 80, 148, 339
AluI AGCT 3 cut(s) 80, 148, 339
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 41
ApoI RAATTY 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 41
BanII GRGCYC 1 cut(s) 42
BccI CCATC 2 cut(s) 78, 226
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 129
BisI GCNGC 2 cut(s) 9, 328
BlsI GCNGC 2 cut(s) 10, 329
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 176
BmsI GCATC 4 cut(s) 96, 118, 212, 294
BpuEI CTTGAG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 89, 132
BseMII CTCAG 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 129, 292
BspACI CCGC 3 cut(s) 8, 328, 330
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 129, 292
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 89, 132
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 2 cut(s) 132, 295
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 129, 292
BstMWI GCNNNNNNNGC 2 cut(s) 115, 336
BstUI CGCG 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 89, 132
CaiI CAGNNNCTG 1 cut(s) 229
Cfr42I CCGCGG 1 cut(s) 331
CviJI RGCY 6 cut(s) 40, 80, 148, 166, 195, 339
CviKI_1 RGCY 6 cut(s) 40, 80, 148, 166, 195, 339
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 131, 294
DpnII GATC 2 cut(s) 129, 292
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 42
FaiI YATR 2 cut(s) 20, 297
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 9, 328
FokI GGATG 2 cut(s) 96, 139
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 9, 328
GluI GCNGC 2 cut(s) 9, 328
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 137
HpaI GTTAAC 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 134, 161, 225
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 151, 156
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 336
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 129
KspAI GTTAAC 1 cut(s) 73
KspI CCGCGG 1 cut(s) 331
Kzo9I GATC 2 cut(s) 129, 292
LpnPI CCDG 5 cut(s) 66, 152, 240, 254, 285
LweI GCATC 4 cut(s) 96, 118, 212, 294
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 131, 294
MboI GATC 2 cut(s) 129, 292
MboII GAAGA 2 cut(s) 105, 275
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 6 cut(s) 20, 81, 130, 167, 188, 326
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 330
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 115, 336
NdeII GATC 2 cut(s) 129, 292
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 111
PkrI GCNGC 2 cut(s) 10, 329
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 229
SacII CCGCGG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 9, 328
Sau3AI GATC 2 cut(s) 129, 292
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 42
SetI ASST 8 cut(s) 31, 78, 82, 150, 159, 180, 337, 341
SfaNI GCATC 4 cut(s) 96, 118, 212, 294
Sfr303I CCGCGG 1 cut(s) 331
SgrBI CCGCGG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 283
SsiI CCGC 3 cut(s) 8, 328, 330
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 78
TasI AATT 1 cut(s) 283
TauI GCSGC 2 cut(s) 11, 330
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 203
XapI RAATTY 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.