FvH4_7g20000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015692
Physical Location & Seq
Reverse (-)
16363127 .. 16364513
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20000.t1

Sequence Viewer

Length: 678 bp
ATGGCAGACTACAGCAAAGACATCTACGACGCCGACGACACCCTCTCCTTCTGCGACTTTTCCATCTACAACGACGACTACGACAACAACTACTCCTCTCCTCGGAAATATTCAGAGTCTCCAGACATGTTCGAGTTCCTCATCGATCCAGACTTCGAGCTCGACTCAACAACAATGGACAACACCATCGTCTTCTGCGGCAAAACCCTGAACACCACCACAACAAAGCAACAACCTAAGCTCTTCATAAGAGACCCGCAAAACGGCCTCTTCTTGGTCAAAACCAACTCCTTCAAGCGATCCAAGAGCCTCCGCTCGATCGACCTCGCCGCCAAACCCTCGTTCAAGTCTTCACCGGCGACTGCCAGCTGCCGGTTCCAGAGCCCCAAGTCTAGGAAGCACAAGATGGTGCTGATCGGATCGCTTTCCAAGCCTCAGCCAAAGATGGTGCTTAGTGACATAAAGAAGAGGCAAGAAAAGTTGGCTCATCCGGCGCCGCTGCTGTTTCCGGTCAGCGAGGGCGGAGAAGCGGCTGTGGACGGCGGGAGTAGGCCCCACAAGTCGAGCTTGCTTCGGCCACTCAGGTGTAGGGCTCACTTCGTGAGCGCGTTGATGAAGGCCTCCTTTGGTTGCATTCCATCACCACGACCGGTCAACGGCCACGCTGCATTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.07

Weight (kDa)

9.24

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20000
malus_domestica MD07G1177600.v1.1
prunus_persica Prupe.2G217000_v2.0.a1
pyrus_communis pycom01g13880 pycom07g17160
rosa_chinensis RchiOBHm_Chr1g0363951
rosa_laevigata RLG00000027533
rosa_multiflora Rmu_co8013202.1_g000001 Rmu_sc0001607.1_g000007 Rmu_ssc0000167.1_g000037
rosa_roxburghii Rroxscaffold_4G00292810
rosa_rugosa Rorug01G0311600
rosa_samantha Rh1AG319400 Rh1BG282500 Rh1CG298900 Rh1DG313900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 315
AccII CGCG 1 cut(s) 608
AciI CCGC 8 cut(s) 198, 257, 313, 330, 497, 522, 530, 543
AclWI GGATC 3 cut(s) 140, 294, 427
AcoI YGGCCR 2 cut(s) 575, 658
AcyI GRCGYC 2 cut(s) 30, 494
AdeI CACNNNGTG 1 cut(s) 601
AfiI CCNNNNNNNGG 6 cut(s) 102, 263, 274, 372, 393, 656
AflIII ACRYGT 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 2 cut(s) 295, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AleI CACNNNNGTG 1 cut(s) 583
AluBI AGCT 4 cut(s) 160, 241, 369, 567
AluI AGCT 4 cut(s) 160, 241, 369, 567
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 123, 246
AlwI GGATC 3 cut(s) 140, 294, 427
AoxI GGCC 5 cut(s) 265, 551, 575, 618, 658
ApeKI GCWGC 3 cut(s) 369, 499, 665
AsiGI ACCGGT 1 cut(s) 649
AspLEI GCGC 2 cut(s) 496, 608
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 345, 633
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 3 cut(s) 162, 386, 595
BbsI GAAGAC 2 cut(s) 184, 342
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 356, 486, 652
BccI CCATC 5 cut(s) 71, 194, 400, 439, 646
BceAI ACGGC 3 cut(s) 280, 556, 673
BcoDI GTCTC 2 cut(s) 123, 246
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 7 cut(s) 199, 330, 370, 497, 500, 531, 666
BlsI GCNGC 7 cut(s) 200, 331, 371, 498, 501, 532, 667
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 3 cut(s) 377, 495, 554
BpiI GAAGAC 2 cut(s) 184, 342
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 2 cut(s) 237, 435
Bsa29I ATCGAT 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 30, 494
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 508, 649
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 77, 107
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 263, 274, 372, 393, 656
Bse118I RCCGGY 3 cut(s) 355, 372, 649
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 6 cut(s) 102, 263, 274, 372, 393, 656
BseMII CTCAG 2 cut(s) 449, 595
BseRI GAGGAG 2 cut(s) 85, 90
BseXI GCAGC 3 cut(s) 356, 486, 652
Bsh1236I CGCG 1 cut(s) 608
Bsh1285I CGRYCG 2 cut(s) 321, 650
BshFI GGCC 5 cut(s) 267, 553, 577, 620, 660
BshNI GGYRCC 1 cut(s) 493
BshTI ACCGGT 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 2 cut(s) 321, 650
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 5 cut(s) 356, 373, 491, 509, 650
BslI CCNNNNNNNGG 6 cut(s) 102, 263, 274, 372, 393, 656
BsmAI GTCTC 2 cut(s) 123, 246
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 5 cut(s) 267, 553, 577, 620, 660
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 3 cut(s) 162, 386, 595
Bsp143I GATC 5 cut(s) 145, 299, 318, 414, 419
BspACI CCGC 8 cut(s) 198, 257, 313, 330, 497, 522, 530, 543
BspANI GGCC 5 cut(s) 267, 553, 577, 620, 660
BspCNI CTCAG 2 cut(s) 448, 594
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 608
BspLI GGNNCC 3 cut(s) 377, 495, 554
BspPI GGATC 3 cut(s) 140, 294, 427
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 3 cut(s) 355, 372, 649
BssAI RCCGGY 3 cut(s) 355, 372, 649
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 5 cut(s) 145, 299, 318, 414, 419
BssNI GRCGYC 2 cut(s) 30, 494
Bst6I CTCTTC 3 cut(s) 248, 275, 461
BstACI GRCGYC 2 cut(s) 30, 494
BstC8I GCNNGC 2 cut(s) 367, 569
BstDEI CTNAG 5 cut(s) 237, 435, 452, 581, 675
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 608
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 496, 608
BstKTI GATC 5 cut(s) 148, 302, 321, 417, 422
BstMAI GTCTC 2 cut(s) 123, 246
BstMBI GATC 5 cut(s) 145, 299, 318, 414, 419
BstMCI CGRYCG 2 cut(s) 321, 650
BstMWI GCNNNNNNNGC 2 cut(s) 430, 491
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 3 cut(s) 356, 486, 652
BstV2I GAAGAC 2 cut(s) 184, 342
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 5 cut(s) 267, 553, 577, 620, 660
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 367, 569
CfoI GCGC 2 cut(s) 496, 608
Cfr10I RCCGGY 3 cut(s) 355, 372, 649
Cfr13I GGNCC 1 cut(s) 552
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 38
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 1 cut(s) 127
DdeI CTNAG 5 cut(s) 237, 435, 452, 581, 675
DinI GGCGCC 1 cut(s) 495
DpnI GATC 5 cut(s) 147, 301, 320, 416, 421
DpnII GATC 5 cut(s) 145, 299, 318, 414, 419
DraIII CACNNNGTG 1 cut(s) 601
EaeI YGGCCR 2 cut(s) 575, 658
Eam1104I CTCTTC 3 cut(s) 248, 275, 461
EarI CTCTTC 3 cut(s) 248, 275, 461
EciI GGCGGA 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 160
Eco147I AGGCCT 1 cut(s) 620
Eco24I GRGCYC 3 cut(s) 162, 386, 595
Eco31I GGTCTC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 552
EcoT38I GRGCYC 3 cut(s) 162, 386, 595
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 128, 248, 461
FalI AAGNNNNNCTT 4 cut(s) 551, 583, 608, 640
FatI CATG 1 cut(s) 126
FauI CCCGC 2 cut(s) 264, 536
Fnu4HI GCNGC 7 cut(s) 199, 330, 370, 497, 500, 531, 666
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 3 cut(s) 162, 386, 595
Fsp4HI GCNGC 7 cut(s) 199, 330, 370, 497, 500, 531, 666
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 495, 607
GluI GCNGC 7 cut(s) 199, 330, 370, 497, 500, 531, 666
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 5 cut(s) 267, 553, 577, 620, 660
HapII CCGG 5 cut(s) 356, 373, 491, 509, 650
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 496, 608
Hin1I GRCGYC 2 cut(s) 30, 494
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 494, 606
HinP1I GCGC 2 cut(s) 494, 606
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 2 cut(s) 116, 164
HpaII CCGG 5 cut(s) 356, 373, 491, 509, 650
HphI GGTGA 2 cut(s) 345, 633
Hpy166II GTNNAC 2 cut(s) 538, 655
Hpy188I TCNGA 3 cut(s) 105, 115, 419
Hpy188III TCNNGA 4 cut(s) 122, 149, 379, 601
Hpy8I GTNNAC 2 cut(s) 538, 655
Hpy99I CGWCG 3 cut(s) 32, 38, 77
HpyAV CCTTC 3 cut(s) 58, 301, 610
HpyCH4V TGCA 2 cut(s) 633, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 491
HpyF3I CTNAG 5 cut(s) 237, 435, 452, 581, 675
Hsp92I GRCGYC 2 cut(s) 30, 494
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 494, 606
KasI GGCGCC 1 cut(s) 493
Kzo9I GATC 5 cut(s) 145, 299, 318, 414, 419
LguI GCTCTTC 1 cut(s) 248
Lsp1109I GCAGC 3 cut(s) 356, 486, 652
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 455
MalI GATC 5 cut(s) 147, 301, 320, 416, 421
MbiI CCGCTC 1 cut(s) 315
MboI GATC 5 cut(s) 145, 299, 318, 414, 419
MboII GAAGA 5 cut(s) 184, 235, 262, 342, 478
MhlI GDGCHC 3 cut(s) 162, 386, 595
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 2 cut(s) 125, 158
MslI CAYNNNNRTG 1 cut(s) 583
MspA1I CMGCKG 2 cut(s) 369, 499
MspI CCGG 5 cut(s) 356, 373, 491, 509, 650
Mva1269I GAATGC 1 cut(s) 633
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 2 cut(s) 430, 491
NarI GGCGCC 1 cut(s) 494
NdeII GATC 5 cut(s) 145, 299, 318, 414, 419
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 3 cut(s) 377, 495, 554
NmuCI GTSAC 1 cut(s) 455
NspI RCATGY 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 583
PceI AGGCCT 1 cut(s) 620
PciI ACATGT 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 78
PctI GAATGC 1 cut(s) 633
PinAI ACCGGT 1 cut(s) 649
PkrI GCNGC 7 cut(s) 200, 331, 371, 498, 501, 532, 667
Ple19I CGATCG 1 cut(s) 321
PleI GAGTC 2 cut(s) 124, 158
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 2 cut(s) 124, 158
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 377, 495, 554
PspPI GGNCC 1 cut(s) 552
PvuI CGATCG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 583
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 248
SatI GCNGC 7 cut(s) 199, 330, 370, 497, 500, 531, 666
Sau3AI GATC 5 cut(s) 145, 299, 318, 414, 419
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 2 cut(s) 125, 158
SduI GDGCHC 3 cut(s) 162, 386, 595
SetI ASST 7 cut(s) 162, 238, 243, 327, 371, 569, 587
SfcI CTRYAG 1 cut(s) 10
SfoI GGCGCC 1 cut(s) 495
SgrAI CRCCGGYG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 583
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 8 cut(s) 198, 257, 313, 330, 497, 522, 530, 543
SspDI GGCGCC 1 cut(s) 493
SspI AATATT 1 cut(s) 110
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 620
TaqI TCGA 7 cut(s) 132, 144, 156, 162, 317, 321, 563
TauI GCSGC 4 cut(s) 201, 332, 499, 533
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 369, 499, 665
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 2 cut(s) 235, 629
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.