Prupe.2G217000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015692
Physical Location & Seq
Reverse (-)
24720572 .. 24721267
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G217000.1

Sequence Viewer

Length: 606 bp
ATGGACGACATAAAAAACAACGCAGTCCTACAAATGGACGACACGGACGACACCCTCTCCTTCTGCGACTTCTCCCTCTACAACGATGATTACGACAACTACTCGCCGTCTCCCCGCCAATACCCGGACACCCCGGAAAGCTTCTTCGAGTTCCTCGTCGACCCGGATTTCGAACCTGACTCTTCCGCAAGGGACCCACGAAACGGCCTCTTCCTCTTCAAAACCAACTCCTTCAAGAGGTCCCACAGCTTCCGATCGACCCTCGATCTGGCCATATCCTCTCCGTTCAAGCCCAGCTCACCGGCCACCGGGAGCTGCCGGTACCAGAGCAGCAAGTCCCGCAAGCATAAGATGGTTCTGATCGGGTCGCTGGTCAAGCCCCAGCCCAAAATGGAGCTCCGCGACATCAAGAGGAGGCAGAGCCGGCGGGTCCCGAAGCCGATGTTCCCGGTCGCTAATGCAACCGAACTGGTTGCCGCTGCACCAGCCGATGGCGGTGGGGCGCACCACAAGGGCCTGCTTCGGCCGCTCAGGTGCAGGGCCCACCTCGTTAGTGCGTTGGTTAAGGCGTCGTTTGGTTGCATTCCGTCACCAAAGCCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.47

Weight (kDa)

9.19

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20000
malus_domestica MD07G1177600.v1.1
prunus_persica Prupe.2G217000_v2.0.a1
pyrus_communis pycom01g13880 pycom07g17160
rosa_chinensis RchiOBHm_Chr1g0363951
rosa_laevigata RLG00000027533
rosa_multiflora Rmu_co8013202.1_g000001 Rmu_sc0001607.1_g000007 Rmu_ssc0000167.1_g000037
rosa_roxburghii Rroxscaffold_4G00292810
rosa_rugosa Rorug01G0311600
rosa_samantha Rh1AG319400 Rh1BG282500 Rh1CG298900 Rh1DG313900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 491
AccBSI CCGCTC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 402
AciI CCGC 8 cut(s) 115, 186, 340, 400, 427, 477, 495, 527
AcoI YGGCCR 3 cut(s) 270, 303, 524
AcyI GRCGYC 1 cut(s) 569
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 7 cut(s) 34, 124, 203, 237, 268, 308, 491
AgsI TTSAA 3 cut(s) 220, 235, 289
AluBI AGCT 5 cut(s) 141, 249, 297, 315, 397
AluI AGCT 5 cut(s) 141, 249, 297, 315, 397
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 6 cut(s) 205, 270, 303, 514, 524, 540
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 315, 330, 479
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp718I GGTACC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 6 cut(s) 193, 240, 430, 514, 540, 541
AsuC2I CCSGG 5 cut(s) 125, 134, 164, 310, 449
AsuHPI GGTGA 2 cut(s) 291, 582
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 3 cut(s) 193, 240, 430
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 2 cut(s) 399, 544
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 302, 342, 466
BccI CCATC 2 cut(s) 346, 485
BceAI ACGGC 2 cut(s) 91, 220
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BcnI CCSGG 5 cut(s) 125, 134, 164, 310, 449
BcoDI GTCTC 1 cut(s) 114
BisI GCNGC 5 cut(s) 316, 331, 477, 480, 527
BlsI GCNGC 5 cut(s) 317, 332, 478, 481, 528
Bme1390I CCNGG 5 cut(s) 125, 134, 164, 310, 449
Bme18I GGWCC 3 cut(s) 193, 240, 430
BmgT120I GGNCC 6 cut(s) 193, 240, 430, 514, 540, 541
BmiI GGNNCC 7 cut(s) 194, 195, 242, 323, 431, 432, 542
BmrFI CCNGG 5 cut(s) 125, 134, 164, 310, 449
Bpu10I CCTNAGC 1 cut(s) 530
Bpu14I TTCGAA 1 cut(s) 171
BpuMI CCSGG 5 cut(s) 125, 134, 164, 310, 449
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 124, 203, 237, 268, 308, 491
Bse118I RCCGGY 3 cut(s) 301, 318, 423
Bse1I ACTGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 7 cut(s) 34, 124, 203, 237, 268, 308, 491
BseMII CTCAG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 544
BseX3I CGGCCG 1 cut(s) 524
BseXI GCAGC 3 cut(s) 302, 342, 466
BseYI CCCAGC 2 cut(s) 293, 381
BsgI GTGCAG 2 cut(s) 465, 556
Bsh1236I CGCG 1 cut(s) 402
Bsh1285I CGRYCG 3 cut(s) 257, 453, 527
BshFI GGCC 6 cut(s) 207, 272, 305, 516, 526, 542
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 3 cut(s) 257, 453, 527
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 8 cut(s) 125, 134, 164, 302, 309, 319, 424, 449
BslFI GGGAC 4 cut(s) 206, 226, 322, 416
BslI CCNNNNNNNGG 7 cut(s) 34, 124, 203, 237, 268, 308, 491
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 4 cut(s) 206, 226, 322, 416
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 6 cut(s) 207, 272, 305, 516, 526, 542
Bsp119I TTCGAA 1 cut(s) 171
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 399, 544
Bsp143I GATC 3 cut(s) 254, 265, 360
BspACI CCGC 8 cut(s) 115, 186, 340, 400, 427, 477, 495, 527
BspANI GGCC 6 cut(s) 207, 272, 305, 516, 526, 542
BspCNI CTCAG 1 cut(s) 543
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 7 cut(s) 194, 195, 242, 323, 431, 432, 542
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 529
BsrFI RCCGGY 3 cut(s) 301, 318, 423
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 3 cut(s) 301, 318, 423
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 254, 265, 360
BssNI GRCGYC 1 cut(s) 569
Bst6I CTCTTC 3 cut(s) 187, 215, 221
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 344, 425, 518
BstDEI CTNAG 1 cut(s) 530
BstENI CCTNNNNNAGG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 257, 268, 363
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 254, 265, 360
BstMCI CGRYCG 3 cut(s) 257, 453, 527
BstMWI GCNNNNNNNGC 5 cut(s) 339, 376, 424, 485, 526
BstSCI CCNGG 5 cut(s) 123, 132, 162, 308, 447
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 3 cut(s) 302, 342, 466
BstZI CGGCCG 1 cut(s) 524
BsuRI GGCC 6 cut(s) 207, 272, 305, 516, 526, 542
Cac8I GCNNGC 3 cut(s) 344, 425, 518
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 3 cut(s) 301, 318, 423
Cfr13I GGNCC 6 cut(s) 193, 240, 430, 514, 540, 541
CseI GACGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 322
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 530
DpnI GATC 3 cut(s) 256, 267, 362
DpnII GATC 3 cut(s) 254, 265, 360
EaeI YGGCCR 3 cut(s) 270, 303, 524
EagI CGGCCG 1 cut(s) 524
Eam1104I CTCTTC 3 cut(s) 187, 215, 221
EarI CTCTTC 3 cut(s) 187, 215, 221
Ecl136II GAGCTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 524
Eco24I GRGCYC 2 cut(s) 399, 544
Eco47I GGWCC 3 cut(s) 193, 240, 430
Eco52I CGGCCG 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoO109I RGGNCCY 5 cut(s) 193, 240, 430, 514, 540
EcoT38I GRGCYC 2 cut(s) 399, 544
Esp3I CGTCTC 1 cut(s) 114
FaiI YATR 3 cut(s) 11, 275, 348
FaqI GGGAC 4 cut(s) 206, 226, 322, 416
FauI CCCGC 3 cut(s) 122, 347, 420
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 316, 331, 477, 480, 527
FriOI GRGCYC 2 cut(s) 399, 544
Fsp4HI GCNGC 5 cut(s) 316, 331, 477, 480, 527
GlaI GCGC 1 cut(s) 504
GluI GCNGC 5 cut(s) 316, 331, 477, 480, 527
GsaI CCCAGC 2 cut(s) 297, 385
HaeIII GGCC 6 cut(s) 207, 272, 305, 516, 526, 542
HapII CCGG 8 cut(s) 125, 134, 164, 302, 309, 319, 424, 449
HgaI GACGC 1 cut(s) 558
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 569
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 179
HpaII CCGG 8 cut(s) 125, 134, 164, 302, 309, 319, 424, 449
HphI GGTGA 2 cut(s) 291, 582
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 254, 360
Hpy188III TCNNGA 3 cut(s) 235, 409, 433
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 161, 574
HpyAV CCTTC 2 cut(s) 70, 241
HpyCH4V TGCA 4 cut(s) 461, 482, 537, 582
HpyF10VI GCNNNNNNNGC 5 cut(s) 339, 376, 424, 485, 526
HpyF3I CTNAG 1 cut(s) 530
Hsp92I GRCGYC 1 cut(s) 569
HspAI GCGC 1 cut(s) 503
KflI GGGWCCC 2 cut(s) 193, 430
KpnI GGTACC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 423
KroNI GCCGGC 1 cut(s) 425
Kzo9I GATC 3 cut(s) 254, 265, 360
LmnI GCTCC 3 cut(s) 312, 394, 402
Lsp1109I GCAGC 3 cut(s) 302, 342, 466
MaeIII GTNAC 1 cut(s) 588
MalI GATC 3 cut(s) 256, 267, 362
MbiI CCGCTC 1 cut(s) 529
MboI GATC 3 cut(s) 254, 265, 360
MboII GAAGA 4 cut(s) 136, 174, 202, 208
MhlI GDGCHC 2 cut(s) 399, 544
MlsI TGGCCA 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 423
MscI TGGCCA 1 cut(s) 272
MseI TTAA 1 cut(s) 564
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 8 cut(s) 125, 134, 164, 302, 309, 319, 424, 449
MspR9I CCNGG 5 cut(s) 125, 134, 164, 310, 449
Mva1269I GAATGC 1 cut(s) 582
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 5 cut(s) 339, 376, 424, 485, 526
NaeI GCCGGC 1 cut(s) 425
NciI CCSGG 5 cut(s) 125, 134, 164, 310, 449
NdeII GATC 3 cut(s) 254, 265, 360
NgoMIV GCCGGC 1 cut(s) 423
NlaIV GGNNCC 7 cut(s) 194, 195, 242, 323, 431, 432, 542
NmuCI GTSAC 1 cut(s) 588
NspV TTCGAA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 90, 153
PctI GAATGC 1 cut(s) 582
PdiI GCCGGC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 5 cut(s) 317, 332, 478, 481, 528
Ple19I CGATCG 1 cut(s) 257
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PpuMI RGGWCCY 3 cut(s) 193, 240, 430
Psp124BI GAGCTC 1 cut(s) 399
Psp5II RGGWCCY 3 cut(s) 193, 240, 430
PspFI CCCAGC 2 cut(s) 293, 381
PspN4I GGNNCC 7 cut(s) 194, 195, 242, 323, 431, 432, 542
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 6 cut(s) 193, 240, 430, 514, 540, 541
PspPPI RGGWCCY 3 cut(s) 193, 240, 430
PvuI CGATCG 1 cut(s) 257
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacI GAGCTC 1 cut(s) 399
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 5 cut(s) 316, 331, 477, 480, 527
Sau3AI GATC 3 cut(s) 254, 265, 360
Sau96I GGNCC 6 cut(s) 193, 240, 430, 514, 540, 541
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 5 cut(s) 125, 134, 164, 310, 449
SduI GDGCHC 2 cut(s) 399, 544
SetI ASST 9 cut(s) 143, 178, 242, 251, 299, 317, 399, 536, 549
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 3 cut(s) 193, 240, 430
SsiI CCGC 8 cut(s) 115, 186, 340, 400, 427, 477, 495, 527
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 5 cut(s) 123, 132, 162, 308, 447
TaqI TCGA 5 cut(s) 147, 159, 171, 257, 264
TauI GCSGC 2 cut(s) 479, 529
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 315, 330, 479
Tsp45I GTSAC 1 cut(s) 588
TspGWI ACGGA 3 cut(s) 59, 273, 576
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 3 cut(s) 193, 240, 430
XagI CCTNNNNNAGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.