pycom01g13880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015692
Physical Location & Seq
Reverse (-)
14216713 .. 14217396
684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13880.1

Sequence Viewer

Length: 684 bp
ATGGACGACAACAAAACCAGTGCAGTCCAGCAGGACCCGTACGACGCAGACGACACCCTCTCGTTCTGCGAGTTCTCCATCTACAACGACGAGAACGACAGCTACTCTCCCTCCCCGCGAAAACACCCAGATACCCCCGACAGCCTCTTCGAGTTCTTCATCGACCCGGAGTTCGAACTCGACTCCTCCGCCGTCACCTTCTGCGGCAAAACCATCGACGACGTCGATTTTCCCCAATACCCGAAGTTGGTGCAGAGGGACCCGCAAAACGGCCTCTTCCTCTTCAAGACCAACTCCTTCAAACGATCGCAGAGCGTCCGGTACCCGCTCGATCTCGCGAAATCGTCAGTCTTGAGGCAGGATTCGCCGACGGCCAGCAGCTGCCGGTACCAGAGCAGCAAGTCGCGGAAGTACAGGACGTCCCTGATCGGGTTGTTGGTCAAGCCCCAACCAAAAATGGAGCTCTGCGACATCAAGAGGCGGCAGAGCCGGCGTGCACCGGGGCCGATGTTCCCGGTCGCCGAGGGAGACCACTCGGGCGAGCTGGTTGCTGCCGCCGCCGCCGACGGTGGTAAGCCTGACAAGAGACCACTTCGACCTGTCAGGTCTAGGTCCCACCTCGTGAGCGCGCTGGTTAAGGCGTCGTTTGGTTGTATTCCGTCGCCAAAACCCGTGTGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.4

Weight (kDa)

8.47

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20000
malus_domestica MD07G1177600.v1.1
prunus_persica Prupe.2G217000_v2.0.a1
pyrus_communis pycom01g13880 pycom07g17160
rosa_chinensis RchiOBHm_Chr1g0363951
rosa_laevigata RLG00000027533
rosa_multiflora Rmu_co8013202.1_g000001 Rmu_sc0001607.1_g000007 Rmu_ssc0000167.1_g000037
rosa_roxburghii Rroxscaffold_4G00292810
rosa_rugosa Rorug01G0311600
rosa_samantha Rh1AG319400 Rh1BG282500 Rh1CG298900 Rh1DG313900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 225, 422
Acc65I GGTACC 2 cut(s) 321, 387
AccB1I GGYRCC 2 cut(s) 321, 387
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 4 cut(s) 118, 338, 406, 629
AcoI YGGCCR 1 cut(s) 372
AcyI GRCGYC 3 cut(s) 222, 419, 641
AdeI CACNNNGTG 1 cut(s) 622
AfaI GTAC 4 cut(s) 41, 323, 389, 413
AfiI CCNNNNNNNGG 4 cut(s) 247, 269, 429, 678
AgsI TTSAA 2 cut(s) 286, 301
AluBI AGCT 4 cut(s) 102, 381, 463, 544
AluI AGCT 4 cut(s) 102, 381, 463, 544
Alw21I GWGCWC 2 cut(s) 465, 499
Alw26I GTCTC 2 cut(s) 522, 580
Alw44I GTGCAC 1 cut(s) 495
AlwNI CAGNNNCTG 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 3 cut(s) 271, 372, 503
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 4 cut(s) 378, 381, 396, 551
ArsI GACNNNNNNTTYG 4 cut(s) 131, 155, 163, 187
Asp718I GGTACC 2 cut(s) 321, 387
AspLEI GCGC 2 cut(s) 629, 631
AspS9I GGNCC 4 cut(s) 34, 259, 503, 612
AsuC2I CCSGG 3 cut(s) 167, 501, 515
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 3 cut(s) 34, 259, 612
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 2 cut(s) 321, 387
BanII GRGCYC 1 cut(s) 465
BauI CACGAG 1 cut(s) 620
Bbv12I GWGCWC 2 cut(s) 465, 499
BbvI GCAGC 4 cut(s) 368, 390, 408, 538
BccI CCATC 2 cut(s) 86, 221
BceAI ACGGC 3 cut(s) 176, 286, 387
BcgI CGANNNNNNTGC 6 cut(s) 196, 230, 232, 266, 530, 564
BcnI CCSGG 3 cut(s) 167, 501, 515
BcoDI GTCTC 2 cut(s) 522, 580
BfaI CTAG 1 cut(s) 609
BisI GCNGC 9 cut(s) 205, 379, 382, 397, 482, 552, 555, 558, 561
BlsI GCNGC 9 cut(s) 206, 380, 383, 398, 483, 553, 556, 559, 562
Bme1390I CCNGG 3 cut(s) 167, 501, 515
Bme18I GGWCC 3 cut(s) 34, 259, 612
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 4 cut(s) 34, 259, 503, 612
BmiI GGNNCC 7 cut(s) 36, 260, 261, 323, 389, 504, 614
BmrFI CCNGG 3 cut(s) 167, 501, 515
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 3 cut(s) 167, 501, 515
BsaHI GRCGYC 3 cut(s) 222, 419, 641
BsaI GGTCTC 2 cut(s) 522, 580
BsaJI CCNNGG 2 cut(s) 500, 522
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 269, 429, 678
Bse118I RCCGGY 2 cut(s) 384, 489
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 500, 522
BseLI CCNNNNNNNGG 4 cut(s) 247, 269, 429, 678
BseNI ACTGG 1 cut(s) 18
BsePI GCGCGC 1 cut(s) 627
BseRI GAGGAG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 4 cut(s) 368, 390, 408, 538
BsgI GTGCAG 2 cut(s) 42, 272
Bsh1236I CGCG 4 cut(s) 118, 338, 406, 629
Bsh1285I CGRYCG 2 cut(s) 308, 519
BshFI GGCC 3 cut(s) 273, 374, 505
BshNI GGYRCC 2 cut(s) 321, 387
BsiEI CGRYCG 2 cut(s) 308, 519
BsiHKAI GWGCWC 2 cut(s) 465, 499
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 6 cut(s) 167, 319, 385, 490, 500, 515
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 3 cut(s) 272, 406, 598
BslI CCNNNNNNNGG 4 cut(s) 247, 269, 429, 678
BsmAI GTCTC 2 cut(s) 522, 580
BsmFI GGGAC 3 cut(s) 272, 406, 598
BsnI GGCC 3 cut(s) 273, 374, 505
Bso31I GGTCTC 2 cut(s) 522, 580
BsoBI CYCGRG 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 465, 499
Bsp143I GATC 3 cut(s) 305, 331, 426
Bsp68I TCGCGA 1 cut(s) 338
BspANI GGCC 3 cut(s) 273, 374, 505
BspFNI CGCG 4 cut(s) 118, 338, 406, 629
BspLI GGNNCC 7 cut(s) 36, 260, 261, 323, 389, 504, 614
BspT104I TTCGAA 1 cut(s) 174
BspT107I GGYRCC 2 cut(s) 321, 387
BspTNI GGTCTC 2 cut(s) 522, 580
BsrBI CCGCTC 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 384, 489
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 2 cut(s) 384, 489
BssECI CCNNGG 2 cut(s) 500, 522
BssHII GCGCGC 1 cut(s) 627
BssMI GATC 3 cut(s) 305, 331, 426
BssNI GRCGYC 3 cut(s) 222, 419, 641
BssSI CACGAG 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 3 cut(s) 152, 281, 287
BstACI GRCGYC 3 cut(s) 222, 419, 641
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 5 cut(s) 376, 491, 495, 542, 629
BstFNI CGCG 4 cut(s) 118, 338, 406, 629
BstHHI GCGC 2 cut(s) 629, 631
BstKTI GATC 3 cut(s) 308, 334, 429
BstMAI GTCTC 2 cut(s) 522, 580
BstMBI GATC 3 cut(s) 305, 331, 426
BstMCI CGRYCG 2 cut(s) 308, 519
BstMWI GCNNNNNNNGC 4 cut(s) 364, 490, 557, 560
BstSCI CCNGG 3 cut(s) 165, 499, 513
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 4 cut(s) 118, 338, 406, 629
BstV1I GCAGC 4 cut(s) 368, 390, 408, 538
BsuRI GGCC 3 cut(s) 273, 374, 505
BtsIMutI CAGTG 1 cut(s) 25
BtuMI TCGCGA 1 cut(s) 338
Cac8I GCNNGC 5 cut(s) 376, 491, 495, 542, 629
CaiI CAGNNNCTG 1 cut(s) 381
CfoI GCGC 2 cut(s) 629, 631
Cfr10I RCCGGY 2 cut(s) 384, 489
Cfr13I GGNCC 4 cut(s) 34, 259, 503, 612
CseI GACGC 3 cut(s) 53, 304, 630
Csp6I GTAC 4 cut(s) 40, 322, 388, 412
CviQI GTAC 4 cut(s) 40, 322, 388, 412
DpnI GATC 3 cut(s) 307, 333, 428
DpnII GATC 3 cut(s) 305, 331, 426
DraIII CACNNNGTG 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 3 cut(s) 152, 281, 287
EarI CTCTTC 3 cut(s) 152, 281, 287
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 2 cut(s) 522, 580
Eco47I GGWCC 3 cut(s) 34, 259, 612
Eco53kI GAGCTC 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 3 cut(s) 34, 259, 612
EcoT38I GRGCYC 1 cut(s) 465
FaqI GGGAC 3 cut(s) 272, 406, 598
FauI CCCGC 3 cut(s) 123, 270, 333
Fnu4HI GCNGC 9 cut(s) 205, 379, 382, 397, 482, 552, 555, 558, 561
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 9 cut(s) 205, 379, 382, 397, 482, 552, 555, 558, 561
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 628, 630
GluI GCNGC 9 cut(s) 205, 379, 382, 397, 482, 552, 555, 558, 561
HaeIII GGCC 3 cut(s) 273, 374, 505
HapII CCGG 6 cut(s) 167, 319, 385, 490, 500, 515
HgaI GACGC 3 cut(s) 53, 304, 630
HhaI GCGC 2 cut(s) 629, 631
Hin1I GRCGYC 3 cut(s) 222, 419, 641
Hin6I GCGC 2 cut(s) 627, 629
HinP1I GCGC 2 cut(s) 627, 629
HinfI GANTC 2 cut(s) 182, 362
HpaII CCGG 6 cut(s) 167, 319, 385, 490, 500, 515
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 497
Hpy188III TCNNGA 5 cut(s) 286, 337, 352, 475, 622
Hpy8I GTNNAC 1 cut(s) 497
Hpy99I CGWCG 9 cut(s) 47, 92, 221, 224, 227, 373, 569, 646, 664
HpyAV CCTTC 2 cut(s) 208, 307
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 2 cut(s) 222, 419
HpyCH4V TGCA 3 cut(s) 23, 253, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 364, 490, 557, 560
HpySE526I ACGT 2 cut(s) 222, 419
Hsp92I GRCGYC 3 cut(s) 222, 419, 641
HspAI GCGC 2 cut(s) 627, 629
KflI GGGWCCC 1 cut(s) 259
KpnI GGTACC 2 cut(s) 325, 391
KroI GCCGGC 1 cut(s) 489
KroNI GCCGGC 1 cut(s) 491
Kzo9I GATC 3 cut(s) 305, 331, 426
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 4 cut(s) 368, 390, 408, 538
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 222, 419
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 307, 333, 428
MbiI CCGCTC 1 cut(s) 328
MboI GATC 3 cut(s) 305, 331, 426
MboII GAAGA 4 cut(s) 139, 148, 268, 274
MhlI GDGCHC 2 cut(s) 465, 499
MlyI GAGTC 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 489
MseI TTAA 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 6 cut(s) 167, 319, 385, 490, 500, 515
MspR9I CCNGG 3 cut(s) 167, 501, 515
MvnI CGCG 4 cut(s) 118, 338, 406, 629
MwoI GCNNNNNNNGC 4 cut(s) 364, 490, 557, 560
NaeI GCCGGC 1 cut(s) 491
NciI CCSGG 3 cut(s) 167, 501, 515
NdeII GATC 3 cut(s) 305, 331, 426
NgoMIV GCCGGC 1 cut(s) 489
NlaIV GGNNCC 7 cut(s) 36, 260, 261, 323, 389, 504, 614
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 193
NruI TCGCGA 1 cut(s) 338
NspV TTCGAA 1 cut(s) 174
PauI GCGCGC 1 cut(s) 627
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 93, 222
PdiI GCCGGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 362
Pfl23II CGTACG 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 9 cut(s) 206, 380, 383, 398, 483, 553, 556, 559, 562
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PpuMI RGGWCCY 3 cut(s) 34, 259, 612
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 3 cut(s) 34, 259, 612
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 7 cut(s) 36, 260, 261, 323, 389, 504, 614
PspPI GGNCC 4 cut(s) 34, 259, 503, 612
PspPPI RGGWCCY 3 cut(s) 34, 259, 612
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 221
PteI GCGCGC 1 cut(s) 627
PvuI CGATCG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 381
RruI TCGCGA 1 cut(s) 338
RsaI GTAC 4 cut(s) 41, 323, 389, 413
RsaNI GTAC 4 cut(s) 40, 322, 388, 412
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 9 cut(s) 205, 379, 382, 397, 482, 552, 555, 558, 561
Sau3AI GATC 3 cut(s) 305, 331, 426
Sau96I GGNCC 4 cut(s) 34, 259, 503, 612
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 167, 501, 515
SduI GDGCHC 2 cut(s) 465, 499
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 3 cut(s) 34, 259, 612
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 165, 499, 513
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 2 cut(s) 225, 422
TaqI TCGA 8 cut(s) 150, 162, 174, 180, 216, 225, 330, 595
TatI WGTACW 1 cut(s) 411
TauI GCSGC 5 cut(s) 207, 484, 557, 560, 563
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 4 cut(s) 378, 381, 396, 551
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 221
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 3 cut(s) 34, 259, 612
XspI CTAG 1 cut(s) 609
ZraI GACGTC 2 cut(s) 223, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.