Rmu_co8013202.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8013202.1
OG0015692
Physical Location & Seq
Forward (+)
1 .. 387
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8013202.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
aactccttcaagcgatcccagagtctccggtcgaccgatctcgccaccaaaccctcgttcaagtcttcaccggcgaccgcgagctgccgttaccagagcgtcaagtctaggaagcacaagatggtgctgatcggatctttgtccaaacctcagcctaagatggtgctcagcgatataaagaagagacaaggaaggttggctccggcgccgctgtttccggtcagcgaaggcggagaacaggctgtggacggtgggagtaaggcccacaagttgagcttgcttcggccacttaggtgtagggcccatttcgtgagcgcgttggtgaaggcctcctttggttgcattccgtcgccacgacccgtcaacggccacgctgcattgacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.78

Weight (kDa)

11.09

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20000
malus_domestica MD07G1177600.v1.1
prunus_persica Prupe.2G217000_v2.0.a1
pyrus_communis pycom01g13880 pycom07g17160
rosa_chinensis RchiOBHm_Chr1g0363951
rosa_laevigata RLG00000027533
rosa_multiflora Rmu_co8013202.1_g000001 Rmu_sc0001607.1_g000007 Rmu_ssc0000167.1_g000037
rosa_roxburghii Rroxscaffold_4G00292810
rosa_rugosa Rorug01G0311600
rosa_samantha Rh1AG319400 Rh1BG282500 Rh1CG298900 Rh1DG313900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 32
AccII CGCG 2 cut(s) 80, 317
AciI CCGC 3 cut(s) 78, 209, 231
AclWI GGATC 2 cut(s) 9, 142
AcoI YGGCCR 2 cut(s) 284, 367
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 10, 61
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AleI CACNNNNGTG 1 cut(s) 292
AluBI AGCT 2 cut(s) 84, 276
AluI AGCT 2 cut(s) 84, 276
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 29, 178
AlwI GGATC 2 cut(s) 9, 142
AoxI GGCC 5 cut(s) 261, 284, 300, 327, 367
ApaI GGGCCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 84, 374
AspLEI GCGC 2 cut(s) 208, 317
AspS9I GGNCC 3 cut(s) 262, 300, 301
AsuHPI GGTGA 2 cut(s) 60, 334
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 71, 361
BccI CCATC 2 cut(s) 115, 154
BceAI ACGGC 2 cut(s) 72, 382
BcoDI GTCTC 2 cut(s) 29, 178
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 3 cut(s) 85, 209, 375
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 86, 210, 376
BmgT120I GGNCC 3 cut(s) 262, 300, 301
BmiI GGNNCC 3 cut(s) 201, 207, 302
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 206
BsaWI WCCGGW 2 cut(s) 27, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 2 cut(s) 164, 181
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 2 cut(s) 71, 361
Bsh1236I CGCG 2 cut(s) 80, 317
Bsh1285I CGRYCG 3 cut(s) 32, 36, 78
BshFI GGCC 5 cut(s) 263, 286, 302, 329, 369
BshNI GGYRCC 1 cut(s) 205
BsiEI CGRYCG 3 cut(s) 32, 36, 78
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 4 cut(s) 28, 71, 203, 218
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 29, 178
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 5 cut(s) 263, 286, 302, 329, 369
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 168, 304
Bsp143I GATC 4 cut(s) 14, 37, 129, 134
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 3 cut(s) 78, 209, 231
BspANI GGCC 5 cut(s) 263, 286, 302, 329, 369
BspCNI CTCAG 2 cut(s) 163, 180
BspFNI CGCG 2 cut(s) 80, 317
BspLI GGNNCC 3 cut(s) 201, 207, 302
BspPI GGATC 2 cut(s) 9, 142
BspT107I GGYRCC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 4 cut(s) 14, 37, 129, 134
BssNI GRCGYC 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 82, 278
BstDEI CTNAG 5 cut(s) 150, 156, 167, 290, 384
BstFNI CGCG 2 cut(s) 80, 317
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 208, 317
BstKTI GATC 4 cut(s) 17, 40, 132, 137
BstMAI GTCTC 2 cut(s) 29, 178
BstMBI GATC 4 cut(s) 14, 37, 129, 134
BstMCI CGRYCG 3 cut(s) 32, 36, 78
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 2 cut(s) 80, 317
BstV1I GCAGC 2 cut(s) 71, 361
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 5 cut(s) 263, 286, 302, 329, 369
Cac8I GCNNGC 2 cut(s) 82, 278
CfoI GCGC 2 cut(s) 208, 317
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 262, 300, 301
CseI GACGC 1 cut(s) 88
DdeI CTNAG 5 cut(s) 150, 156, 167, 290, 384
DinI GGCGCC 1 cut(s) 207
DpnI GATC 4 cut(s) 16, 39, 131, 136
DpnII GATC 4 cut(s) 14, 37, 129, 134
EaeI YGGCCR 2 cut(s) 284, 367
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 304
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
FaiI YATR 1 cut(s) 176
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 317, 349
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 85, 209, 375
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 3 cut(s) 85, 209, 375
FspBI CTAG 1 cut(s) 108
GlaI GCGC 2 cut(s) 207, 316
GluI GCNGC 3 cut(s) 85, 209, 375
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 5 cut(s) 263, 286, 302, 329, 369
HapII CCGG 4 cut(s) 28, 71, 203, 218
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 208, 317
Hin1I GRCGYC 1 cut(s) 206
Hin6I GCGC 2 cut(s) 206, 315
HinP1I GCGC 2 cut(s) 206, 315
HincII GTYRAC 2 cut(s) 33, 364
HindII GTYRAC 2 cut(s) 33, 364
HinfI GANTC 1 cut(s) 22
HpaII CCGG 4 cut(s) 28, 71, 203, 218
HphI GGTGA 2 cut(s) 60, 334
Hpy166II GTNNAC 3 cut(s) 33, 247, 364
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 3 cut(s) 33, 247, 364
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 4 cut(s) 16, 186, 221, 319
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 342, 377
HpyF3I CTNAG 5 cut(s) 150, 156, 167, 290, 384
Hsp92I GRCGYC 1 cut(s) 206
HspAI GCGC 2 cut(s) 206, 315
KasI GGCGCC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 14, 37, 129, 134
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 32, 41, 84, 107, 216, 224, 231
Lsp1109I GCAGC 2 cut(s) 71, 361
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 89
MalI GATC 4 cut(s) 16, 39, 131, 136
MboI GATC 4 cut(s) 14, 37, 129, 134
MboII GAAGA 2 cut(s) 57, 193
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 168, 304
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 3 cut(s) 64, 159, 340
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 4 cut(s) 28, 71, 203, 218
Mva1269I GAATGC 1 cut(s) 342
MvnI CGCG 2 cut(s) 80, 317
NarI GGCGCC 1 cut(s) 206
NdeII GATC 4 cut(s) 14, 37, 129, 134
NlaIV GGNNCC 3 cut(s) 201, 207, 302
OliI CACNNNNGTG 1 cut(s) 292
PceI AGGCCT 1 cut(s) 329
PctI GAATGC 1 cut(s) 342
PkrI GCNGC 3 cut(s) 86, 210, 376
PleI GAGTC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 201, 207, 302
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 3 cut(s) 262, 300, 301
PsuI RGATCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 292
SalI GTCGAC 1 cut(s) 31
SatI GCNGC 3 cut(s) 85, 209, 375
Sau3AI GATC 4 cut(s) 14, 37, 129, 134
Sau96I GGNCC 3 cut(s) 262, 300, 301
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 2 cut(s) 168, 304
SetI ASST 5 cut(s) 86, 151, 197, 278, 296
SfoI GGCGCC 1 cut(s) 207
SgrAI CRCCGGYG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 292
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 3 cut(s) 78, 209, 231
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 1 cut(s) 108
StuI AGGCCT 1 cut(s) 329
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 32
TaqII GACCGA 1 cut(s) 50
TauI GCSGC 1 cut(s) 211
TseI GCWGC 2 cut(s) 84, 374
TspGWI ACGGA 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.