MD07G1177600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015692
Physical Location & Seq
Reverse (-)
25715170 .. 25715900
731 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1177600.v1.1.491

Sequence Viewer

Length: 711 bp
ATGGACGACACCAAAAACACTGCAGTCCCGCAGGACCAGTCCGACGCAGACGACACCCTTTCCTTCTGCGACTTCTCCCTCTACAACGACCACTACGACAGCTACTCTCCCTCCCCCCGAAAATACCCAGATACCCCCGACAGCCTCTTCGAGTTCTTCATCGACCACCCGGATTTCGAGCTCGACTCCTCCGCCGTCGTCTTCTGCGGCAAAACCATCGACGACGTCGATTTCCCCCAAAACACGAAATTGGTGCAGAGGGACCCGCGAAACGGCCTCTTCCTCTTCAAGACCAACTCCTTCAAACGATCGCAGAGCGTCCGATCGCCGGTCGATCTCGAAAAATCGTCAGTCTTCAGGCCGAATTCGCCGGCCGCCGGCAGCTGTCGGTACCAGAGCAGCAAGTCCAAGAAGCACAGGACGGCCCTGATCGGGTCGCTGGTCAAGCCCCAGCCCAAAATGGAGCTCAGCGACATCAAGAGGCGGCAGAGCCGGCTGGCACCGGGGCCCATGTTCCAGATCGCCGAGGGAGACCACTCAGGCGAGCTGGTTGCTGCTTTCGCCGCCGATGGTGGTAAGGCCCACAAGAGCCCGCTTCGGCCGCTCAGGTGTAGGTCCCACCTCGTGAGCGCGCTGGTGAAGGCTTCGTTTGGTTGTATTCCGTCGCCTAAAACCCGTGTAGAATTATCCGATTTCCCGCGTGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

8.23

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015692)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20000
malus_domestica MD07G1177600.v1.1
prunus_persica Prupe.2G217000_v2.0.a1
pyrus_communis pycom01g13880 pycom07g17160
rosa_chinensis RchiOBHm_Chr1g0363951
rosa_laevigata RLG00000027533
rosa_multiflora Rmu_co8013202.1_g000001 Rmu_sc0001607.1_g000007 Rmu_ssc0000167.1_g000037
rosa_roxburghii Rroxscaffold_4G00292810
rosa_rugosa Rorug01G0311600
rosa_samantha Rh1AG319400 Rh1BG282500 Rh1CG298900 Rh1DG313900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 390, 499
AccBSI CCGCTC 1 cut(s) 604
AccII CGCG 3 cut(s) 268, 632, 700
AcoI YGGCCR 2 cut(s) 372, 599
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 340
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 5 cut(s) 272, 328, 377, 432, 703
AgsI TTSAA 2 cut(s) 289, 304
AluBI AGCT 5 cut(s) 102, 181, 384, 466, 547
AluI AGCT 5 cut(s) 102, 181, 384, 466, 547
Alw21I GWGCWC 2 cut(s) 183, 468
Alw26I GTCTC 1 cut(s) 525
AoxI GGCC 7 cut(s) 274, 359, 372, 423, 506, 579, 599
ApaI GGGCCC 1 cut(s) 510
ApeKI GCWGC 3 cut(s) 381, 399, 554
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp718I GGTACC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 632, 634
AspS9I GGNCC 7 cut(s) 34, 262, 424, 506, 507, 580, 615
AsuC2I CCSGG 2 cut(s) 170, 504
AsuHPI GGTGA 1 cut(s) 649
AvaII GGWCC 3 cut(s) 34, 262, 615
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 2 cut(s) 390, 499
BanII GRGCYC 4 cut(s) 183, 468, 510, 593
BauI CACGAG 1 cut(s) 623
BbsI GAAGAC 2 cut(s) 193, 346
Bbv12I GWGCWC 2 cut(s) 183, 468
BbvI GCAGC 3 cut(s) 393, 411, 541
BccI CCATC 2 cut(s) 224, 563
BceAI ACGGC 3 cut(s) 179, 289, 438
BcgI CGANNNNNNTGC 6 cut(s) 199, 233, 235, 269, 533, 567
BcnI CCSGG 2 cut(s) 170, 504
BcoDI GTCTC 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 8 cut(s) 208, 375, 382, 400, 485, 555, 564, 602
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 8 cut(s) 209, 376, 383, 401, 486, 556, 565, 603
Bme1390I CCNGG 2 cut(s) 170, 504
Bme18I GGWCC 3 cut(s) 34, 262, 615
BmgT120I GGNCC 7 cut(s) 34, 262, 424, 506, 507, 580, 615
BmiI GGNNCC 7 cut(s) 263, 264, 392, 501, 507, 508, 617
BmrFI CCNGG 2 cut(s) 170, 504
BpiI GAAGAC 2 cut(s) 193, 346
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 605
Bpu1102I GCTNAGC 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 170, 504
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 503, 525
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 328, 377, 432, 703
Bse118I RCCGGY 4 cut(s) 328, 370, 377, 492
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 503, 525
BseLI CCNNNNNNNGG 5 cut(s) 272, 328, 377, 432, 703
BseMII CTCAG 3 cut(s) 481, 552, 619
BseNI ACTGG 1 cut(s) 37
BsePI GCGCGC 1 cut(s) 630
BseRI GAGGAG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 510
BseX3I CGGCCG 2 cut(s) 372, 599
BseXI GCAGC 3 cut(s) 393, 411, 541
BseYI CCCAGC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 3 cut(s) 268, 632, 700
Bsh1285I CGRYCG 5 cut(s) 311, 326, 333, 375, 602
BshFI GGCC 7 cut(s) 276, 361, 374, 425, 508, 581, 601
BshNI GGYRCC 2 cut(s) 390, 499
BsiEI CGRYCG 5 cut(s) 311, 326, 333, 375, 602
BsiHKAI GWGCWC 2 cut(s) 183, 468
BsiSI CCGG 6 cut(s) 170, 329, 371, 378, 493, 503
BslFI GGGAC 3 cut(s) 11, 275, 601
BslI CCNNNNNNNGG 5 cut(s) 272, 328, 377, 432, 703
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 3 cut(s) 11, 275, 601
BsnI GGCC 7 cut(s) 276, 361, 374, 425, 508, 581, 601
Bso31I GGTCTC 1 cut(s) 525
Bsp120I GGGCCC 1 cut(s) 506
Bsp1286I GDGCHC 4 cut(s) 183, 468, 510, 593
Bsp143I GATC 5 cut(s) 308, 323, 334, 429, 519
Bsp1720I GCTNAGC 1 cut(s) 467
BspANI GGCC 7 cut(s) 276, 361, 374, 425, 508, 581, 601
BspCNI CTCAG 3 cut(s) 480, 551, 618
BspFNI CGCG 3 cut(s) 268, 632, 700
BspLI GGNNCC 7 cut(s) 263, 264, 392, 501, 507, 508, 617
BspMAI CTGCAG 1 cut(s) 25
BspT107I GGYRCC 2 cut(s) 390, 499
BspTNI GGTCTC 1 cut(s) 525
BsrBI CCGCTC 1 cut(s) 604
BsrFI RCCGGY 4 cut(s) 328, 370, 377, 492
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 4 cut(s) 328, 370, 377, 492
BssECI CCNNGG 2 cut(s) 503, 525
BssHII GCGCGC 1 cut(s) 630
BssMI GATC 5 cut(s) 308, 323, 334, 429, 519
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 623
Bst2BI CACGAG 1 cut(s) 623
Bst6I CTCTTC 3 cut(s) 152, 284, 290
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 7 cut(s) 372, 379, 494, 498, 545, 593, 632
BstDEI CTNAG 3 cut(s) 467, 538, 605
BstFNI CGCG 3 cut(s) 268, 632, 700
BstHHI GCGC 2 cut(s) 632, 634
BstKTI GATC 5 cut(s) 311, 326, 337, 432, 522
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 5 cut(s) 308, 323, 334, 429, 519
BstMCI CGRYCG 5 cut(s) 311, 326, 333, 375, 602
BstMWI GCNNNNNNNGC 6 cut(s) 367, 445, 493, 560, 563, 601
BstSCI CCNGG 2 cut(s) 168, 502
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 3 cut(s) 268, 632, 700
BstV1I GCAGC 3 cut(s) 393, 411, 541
BstV2I GAAGAC 2 cut(s) 193, 346
BstZI CGGCCG 2 cut(s) 372, 599
BsuRI GGCC 7 cut(s) 276, 361, 374, 425, 508, 581, 601
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 7 cut(s) 372, 379, 494, 498, 545, 593, 632
CfoI GCGC 2 cut(s) 632, 634
Cfr10I RCCGGY 4 cut(s) 328, 370, 377, 492
Cfr13I GGNCC 7 cut(s) 34, 262, 424, 506, 507, 580, 615
CseI GACGC 2 cut(s) 53, 307
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 511
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 467, 538, 605
DpnI GATC 5 cut(s) 310, 325, 336, 431, 521
DpnII GATC 5 cut(s) 308, 323, 334, 429, 519
DraIII CACNNNGTG 1 cut(s) 625
EaeI YGGCCR 2 cut(s) 372, 599
EagI CGGCCG 2 cut(s) 372, 599
Eam1104I CTCTTC 3 cut(s) 152, 284, 290
EarI CTCTTC 3 cut(s) 152, 284, 290
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 2 cut(s) 181, 466
EclXI CGGCCG 2 cut(s) 372, 599
Eco24I GRGCYC 4 cut(s) 183, 468, 510, 593
Eco31I GGTCTC 1 cut(s) 525
Eco47I GGWCC 3 cut(s) 34, 262, 615
Eco52I CGGCCG 2 cut(s) 372, 599
Eco53kI GAGCTC 2 cut(s) 181, 466
Eco57I CTGAAG 1 cut(s) 340
EcoICRI GAGCTC 2 cut(s) 181, 466
EcoO109I RGGNCCY 3 cut(s) 262, 506, 615
EcoRI GAATTC 1 cut(s) 364
EcoT38I GRGCYC 4 cut(s) 183, 468, 510, 593
FaeI CATG 1 cut(s) 514
FaiI YATR 1 cut(s) 512
FaqI GGGAC 3 cut(s) 11, 275, 601
FatI CATG 1 cut(s) 510
FauI CCCGC 4 cut(s) 36, 273, 600, 705
Fnu4HI GCNGC 8 cut(s) 208, 375, 382, 400, 485, 555, 564, 602
FriOI GRGCYC 4 cut(s) 183, 468, 510, 593
Fsp4HI GCNGC 8 cut(s) 208, 375, 382, 400, 485, 555, 564, 602
GlaI GCGC 2 cut(s) 631, 633
GluI GCNGC 8 cut(s) 208, 375, 382, 400, 485, 555, 564, 602
GsaI CCCAGC 1 cut(s) 454
HaeIII GGCC 7 cut(s) 276, 361, 374, 425, 508, 581, 601
HapII CCGG 6 cut(s) 170, 329, 371, 378, 493, 503
HgaI GACGC 2 cut(s) 53, 307
HhaI GCGC 2 cut(s) 632, 634
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 514
Hin6I GCGC 2 cut(s) 630, 632
HinP1I GCGC 2 cut(s) 630, 632
HinfI GANTC 1 cut(s) 185
HpaII CCGG 6 cut(s) 170, 329, 371, 378, 493, 503
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 3 cut(s) 43, 323, 691
Hpy188III TCNNGA 5 cut(s) 289, 338, 478, 517, 625
Hpy8I GTNNAC 1 cut(s) 706
Hpy99I CGWCG 6 cut(s) 47, 200, 224, 227, 230, 667
HpyAV CCTTC 3 cut(s) 73, 310, 634
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 23, 256
HpyF10VI GCNNNNNNNGC 6 cut(s) 367, 445, 493, 560, 563, 601
HpyF3I CTNAG 3 cut(s) 467, 538, 605
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 514
HspAI GCGC 2 cut(s) 630, 632
KflI GGGWCCC 1 cut(s) 262
KpnI GGTACC 1 cut(s) 394
KroI GCCGGC 3 cut(s) 370, 377, 492
KroNI GCCGGC 3 cut(s) 372, 379, 494
Kzo9I GATC 5 cut(s) 308, 323, 334, 429, 519
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 3 cut(s) 393, 411, 541
MaeII ACGT 1 cut(s) 225
MalI GATC 5 cut(s) 310, 325, 336, 431, 521
MbiI CCGCTC 1 cut(s) 604
MboI GATC 5 cut(s) 308, 323, 334, 429, 519
MboII GAAGA 6 cut(s) 139, 148, 193, 271, 277, 346
MhlI GDGCHC 4 cut(s) 183, 468, 510, 593
MluCI AATT 3 cut(s) 248, 364, 683
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 66
MroNI GCCGGC 3 cut(s) 370, 377, 492
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 6 cut(s) 170, 329, 371, 378, 493, 503
MspR9I CCNGG 2 cut(s) 170, 504
MvnI CGCG 3 cut(s) 268, 632, 700
MwoI GCNNNNNNNGC 6 cut(s) 367, 445, 493, 560, 563, 601
NaeI GCCGGC 3 cut(s) 372, 379, 494
NciI CCSGG 2 cut(s) 170, 504
NdeII GATC 5 cut(s) 308, 323, 334, 429, 519
NgoMIV GCCGGC 3 cut(s) 370, 377, 492
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 7 cut(s) 263, 264, 392, 501, 507, 508, 617
NmeAIII GCCGAG 1 cut(s) 550
PauI GCGCGC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 225
PdiI GCCGGC 3 cut(s) 372, 379, 494
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 8 cut(s) 209, 376, 383, 401, 486, 556, 565, 603
Ple19I CGATCG 2 cut(s) 311, 326
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PpuMI RGGWCCY 2 cut(s) 262, 615
Psp124BI GAGCTC 2 cut(s) 183, 468
Psp5II RGGWCCY 2 cut(s) 262, 615
PspFI CCCAGC 1 cut(s) 450
PspN4I GGNNCC 7 cut(s) 263, 264, 392, 501, 507, 508, 617
PspOMI GGGCCC 1 cut(s) 506
PspPI GGNCC 7 cut(s) 34, 262, 424, 506, 507, 580, 615
PspPPI RGGWCCY 2 cut(s) 262, 615
PstI CTGCAG 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 224
PteI GCGCGC 1 cut(s) 630
PvuI CGATCG 2 cut(s) 311, 326
PvuII CAGCTG 1 cut(s) 384
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 2 cut(s) 183, 468
SatI GCNGC 8 cut(s) 208, 375, 382, 400, 485, 555, 564, 602
Sau3AI GATC 5 cut(s) 308, 323, 334, 429, 519
Sau96I GGNCC 7 cut(s) 34, 262, 424, 506, 507, 580, 615
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 170, 504
SduI GDGCHC 4 cut(s) 183, 468, 510, 593
SetI ASST 9 cut(s) 104, 183, 228, 386, 468, 549, 611, 617, 624
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 3 cut(s) 34, 262, 615
Sse9I AATT 3 cut(s) 248, 364, 683
SstI GAGCTC 2 cut(s) 183, 468
StyD4I CCNGG 2 cut(s) 168, 502
TaiI ACGT 1 cut(s) 228
TaqI TCGA 8 cut(s) 150, 162, 177, 183, 219, 228, 333, 339
TasI AATT 3 cut(s) 248, 364, 683
TauI GCSGC 5 cut(s) 210, 377, 487, 566, 604
TscAI CASTG 1 cut(s) 25
TseI GCWGC 3 cut(s) 381, 399, 554
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 3 cut(s) 34, 262, 615
XapI RAATTY 1 cut(s) 364
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.