FvH4_7g20110

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016099
Physical Location & Seq
Reverse (-)
16414124 .. 16416807
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20110.t1

Sequence Viewer

Length: 516 bp
ATGAGCGGCGCCGGGAAGAAAGTGATGGATGTGGCTAACCTAACCTTCAAGGTTGGGAAGAAGATCGACTGGGACGGCATGGCCAAGCTCATGGTCTCCGAAGAGGCCCGTAAGGAGTTCGCCAATCTCCGCCGCGCCTTCGATGAGGTTAACCAGACCCTCGAGACCAAGTTCAGCCAGGAGCCTGAGCCGATTGACTGGGAGTACTACAGGAAAGGAATTGGGTCTCGGTTGGTGGATATGTACAAGGAGGCCTATGACAATGTTAAGATCCCCAAGTATGTGGATACAGTCACTCCTGAGTACAAGCCCAAGTTTGATGCATTGTTGGTGGAACTAAAGGATGCAGAGGAAAAATCTTTGAAGGAGTCAGAGCGCTTAGAAAAGGAGATAGCTGAAGTACAAGAGATGAAGAAAAAGATTGCCACCATGACTGCTGATGAATACTTTGAGAAACATCCTGAGCTCAGGAAGAAGTTCGATGACGAGATCCGGAATGACTATTGGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
Mt_ATP-synt_D

Protein Analysis

172

Amino Acids

20.18

Weight (kDa)

5.23

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mt_ATP-synt_D PF05873 19 - 169 1.3e-18 ATP synthase D chain, mitochondrial (ATP5H)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52300
fragaria_vesca FvH4_7g20110
malus_domestica MD01G1130700.v1.1 MD07G1178800.v1.1
prunus_persica Prupe.2G217900_v2.0.a1
pyrus_communis pycom01g13950 pycom07g17250
rosa_chinensis RchiOBHm_Chr1g0364071
rosa_laevigata RLG00000027519
rosa_multiflora Rmu_sc0000071.1_g000026
rosa_roxburghii Rroxscaffold_4G00292670
rosa_rugosa Rorug01G0313300
rosa_samantha Rh1AG320700 Rh1CG300300
rosa_wichuraiana Rw1G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 492
AciI CCGC 3 cut(s) 6, 130, 133
AclWI GGATC 2 cut(s) 265, 484
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 206, 245, 305, 402
AfeI AGCGCT 1 cut(s) 377
AgsI TTSAA 2 cut(s) 49, 364
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 88, 395, 466
AluI AGCT 3 cut(s) 88, 395, 466
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 3 cut(s) 100, 158, 231
AlwI GGATC 2 cut(s) 265, 484
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 492
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 3 cut(s) 81, 105, 252
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 3 cut(s) 11, 137, 378
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 161
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 280
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 3 cut(s) 100, 158, 231
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 2 cut(s) 12, 379
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 2 cut(s) 7, 133
BlsI GCNGC 2 cut(s) 8, 134
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 13, 179
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 10, 183
BmrFI CCNGG 2 cut(s) 13, 179
BmrI ACTGGG 2 cut(s) 79, 208
BmsI GCATC 2 cut(s) 310, 334
BmuI ACTGGG 2 cut(s) 79, 208
Bpu10I CCTNAGC 3 cut(s) 186, 462, 467
BpuMI CCSGG 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 3 cut(s) 100, 158, 231
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse1I ACTGG 2 cut(s) 74, 203
BseAI TCCGGA 1 cut(s) 492
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 3 cut(s) 34, 349, 457
BseMII CTCAG 4 cut(s) 177, 291, 453, 481
BseNI ACTGG 2 cut(s) 74, 203
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 83, 107, 254
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 12, 493
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 3 cut(s) 100, 158, 231
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 83, 107, 254
Bso31I GGTCTC 3 cut(s) 100, 158, 231
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 468
Bsp13I TCCGGA 1 cut(s) 492
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 63, 270, 489
BspACI CCGC 3 cut(s) 6, 130, 133
BspANI GGCC 3 cut(s) 83, 107, 254
BspCNI CTCAG 4 cut(s) 178, 292, 454, 480
BspEI TCCGGA 1 cut(s) 492
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 10, 183
BspPI GGATC 2 cut(s) 265, 484
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 3 cut(s) 100, 158, 231
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 74, 203
BssMI GATC 3 cut(s) 63, 270, 489
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 186, 300, 379, 462, 467
BstF5I GGATG 3 cut(s) 34, 349, 457
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 12, 379
BstHHI GCGC 3 cut(s) 11, 137, 378
BstKTI GATC 3 cut(s) 66, 273, 492
BstMAI GTCTC 3 cut(s) 100, 158, 231
BstMBI GATC 3 cut(s) 63, 270, 489
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 11, 177
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 270, 489
BstXI CCANNNNNNTGG 2 cut(s) 91, 283
BstYI RGATCY 2 cut(s) 270, 489
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 3 cut(s) 83, 107, 254
BtsCI GGATG 3 cut(s) 34, 349, 457
CfoI GCGC 3 cut(s) 11, 137, 378
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 4 cut(s) 205, 244, 304, 401
CviAII CATG 3 cut(s) 79, 91, 430
CviQI GTAC 4 cut(s) 205, 244, 304, 401
DdeI CTNAG 5 cut(s) 186, 300, 379, 462, 467
DinI GGCGCC 1 cut(s) 10
DpnI GATC 3 cut(s) 65, 272, 491
DpnII GATC 3 cut(s) 63, 270, 489
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 3 cut(s) 100, 158, 231
Eco47III AGCGCT 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 468
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
FaeI CATG 3 cut(s) 82, 94, 433
FaiI YATR 6 cut(s) 80, 92, 242, 258, 282, 431
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 78, 90, 429
Fnu4HI GCNGC 2 cut(s) 7, 133
FokI GGATG 3 cut(s) 41, 356, 444
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 2 cut(s) 7, 133
GlaI GCGC 3 cut(s) 10, 136, 377
GluI GCNGC 2 cut(s) 7, 133
HaeII RGCGCY 2 cut(s) 12, 379
HaeIII GGCC 3 cut(s) 83, 107, 254
HapII CCGG 2 cut(s) 12, 493
HhaI GCGC 3 cut(s) 11, 137, 378
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 82, 94, 433
Hin6I GCGC 3 cut(s) 9, 135, 376
HinP1I GCGC 3 cut(s) 9, 135, 376
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 368
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 12, 493
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 100, 373
Hpy188III TCNNGA 5 cut(s) 163, 299, 461, 469, 493
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 55, 148, 358
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 323, 347
HpyF3I CTNAG 5 cut(s) 186, 300, 379, 462, 467
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 82, 94, 433
HspAI GCGC 3 cut(s) 9, 135, 376
KasI GGCGCC 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 492
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 63, 270, 489
LmnI GCTCC 1 cut(s) 181
LweI GCATC 2 cut(s) 310, 334
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 65, 272, 491
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 63, 270, 489
MboII GAAGA 6 cut(s) 28, 70, 73, 113, 424, 484
MflI RGATCY 2 cut(s) 270, 489
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 5 cut(s) 97, 139, 170, 244, 343
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 325
MroI TCCGGA 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 150, 267
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 12, 493
MspR9I CCNGG 2 cut(s) 13, 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 135
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 13
NdeII GATC 3 cut(s) 63, 270, 489
NlaIII CATG 3 cut(s) 82, 94, 433
NlaIV GGNNCC 2 cut(s) 10, 183
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 161
PceI AGGCCT 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 476
PkrI GCNGC 2 cut(s) 8, 134
PleI GAGTC 1 cut(s) 376
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 10, 183
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 2 cut(s) 270, 489
RsaI GTAC 4 cut(s) 206, 245, 305, 402
RsaNI GTAC 4 cut(s) 205, 244, 304, 401
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 150, 267
SatI GCNGC 2 cut(s) 7, 133
Sau3AI GATC 3 cut(s) 63, 270, 489
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 13, 179
SduI GDGCHC 1 cut(s) 468
SetI ASST 7 cut(s) 42, 47, 54, 90, 150, 397, 468
SfaNI GCATC 2 cut(s) 310, 334
SfcI CTRYAG 1 cut(s) 208
SfoI GGCGCC 1 cut(s) 10
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 3 cut(s) 6, 130, 133
SspDI GGCGCC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 11, 177
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 4 cut(s) 66, 141, 162, 480
TasI AATT 1 cut(s) 219
TatI WGTACW 4 cut(s) 204, 243, 303, 400
TauI GCSGC 2 cut(s) 9, 135
Tru1I TTAA 2 cut(s) 150, 267
Tru9I TTAA 2 cut(s) 150, 267
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 425, 456
XhoI CTCGAG 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.