RchiOBHm_Chr1g0364071

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016099
Physical Location & Seq
Reverse (-)
55341616 .. 55344104
2489 bp
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UTR
Exon/CDS
Intron
PRQ58877

Sequence Viewer

Length: 507 bp
ATGAGCGGCGCCGGGAAGAAAGTGGTGGATGTGGCTTTCAAAGCCTCGAAGAAGATTGACTGGGATGGCATGGCCAAGCTTATCGTCTCCGAGGAGGCTCGCAAGGAGTTCGCTTCTCTCCGCCGCGCCTTCGATGAGGTTAACACCACCCTCGAGACCAAGTTCAGCCAGGAACCTGAGCCCATTGACTGGGAGTACTACAGGAAAGGAATTGGGTCTCGATTGGTGGACATGTACAAAGAGGCCTATGACAACGTTAAGATCCCCAAGTATGTGGATACAGTCACTCCCGAGTACAAGCCTAAGTTTGATGCATTGTTGGTGGAACTAAAGGAAGCAGAGGAAAAATCTTTCAAGGAGTCAGAGCGCTTAGAGAAGGAGATAGCTGAAGTAAAAGAGTTGAAGCAAAAGATTGCTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTCAAGAAGAAGTTTGATGATGAGATCCGGAATGACAATTGGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
Mt_ATP-synt_D

Protein Analysis

168

Amino Acids

19.71

Weight (kDa)

5.24

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mt_ATP-synt_D PF05873 15 - 157 1e-18 ATP synthase D chain, mitochondrial (ATP5H)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52300
fragaria_vesca FvH4_7g20110
malus_domestica MD01G1130700.v1.1 MD07G1178800.v1.1
prunus_persica Prupe.2G217900_v2.0.a1
pyrus_communis pycom01g13950 pycom07g17250
rosa_chinensis RchiOBHm_Chr1g0364071
rosa_laevigata RLG00000027519
rosa_multiflora Rmu_sc0000071.1_g000026
rosa_roxburghii Rroxscaffold_4G00292670
rosa_rugosa Rorug01G0313300
rosa_samantha Rh1AG320700 Rh1CG300300
rosa_wichuraiana Rw1G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 189
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 483
AciI CCGC 3 cut(s) 6, 121, 124
AclI AACGTT 1 cut(s) 255
AclWI GGATC 2 cut(s) 256, 475
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 3 cut(s) 197, 236, 296
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 3 cut(s) 40, 355, 403
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 79, 386, 457
AluI AGCT 3 cut(s) 79, 386, 457
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 91, 149, 222
AlwI GGATC 2 cut(s) 256, 475
Ama87I CYCGRG 2 cut(s) 152, 290
Aor13HI TCCGGA 1 cut(s) 483
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 2 cut(s) 72, 243
AspLEI GCGC 3 cut(s) 11, 128, 369
AsuC2I CCSGG 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 152, 290
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 183, 459
Bbv12I GWGCWC 1 cut(s) 459
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 3 cut(s) 91, 149, 222
BfmI CTRYAG 1 cut(s) 199
BfoI RGCGCY 2 cut(s) 12, 370
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 2 cut(s) 7, 124
BlsI GCNGC 2 cut(s) 8, 125
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 13, 170
BmeT110I CYCGRG 2 cut(s) 152, 290
BmiI GGNNCC 2 cut(s) 10, 174
BmrFI CCNGG 2 cut(s) 13, 170
BmrI ACTGGG 2 cut(s) 70, 199
BmsI GCATC 2 cut(s) 301, 457
BmuI ACTGGG 2 cut(s) 70, 199
Bpu10I CCTNAGC 2 cut(s) 177, 453
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 2 cut(s) 149, 222
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 65, 194
BseAI TCCGGA 1 cut(s) 483
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 34, 70, 448
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 168, 444
BseNI ACTGG 2 cut(s) 65, 194
BseRI GAGGAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 74, 245
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 152, 290
BsiSI CCGG 2 cut(s) 12, 484
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 3 cut(s) 91, 149, 222
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 2 cut(s) 74, 245
Bso31I GGTCTC 2 cut(s) 149, 222
BsoBI CYCGRG 2 cut(s) 152, 290
Bsp1286I GDGCHC 2 cut(s) 183, 459
Bsp13I TCCGGA 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 261, 480
BspACI CCGC 3 cut(s) 6, 121, 124
BspANI GGCC 2 cut(s) 74, 245
BspCNI CTCAG 2 cut(s) 169, 445
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 10, 174
BspPI GGATC 2 cut(s) 256, 475
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 2 cut(s) 149, 222
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 65, 194
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 261, 480
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 177, 303, 370, 453
BstF5I GGATG 3 cut(s) 34, 70, 448
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 2 cut(s) 12, 370
BstHHI GCGC 3 cut(s) 11, 128, 369
BstKTI GATC 2 cut(s) 264, 483
BstMAI GTCTC 3 cut(s) 91, 149, 222
BstMBI GATC 2 cut(s) 261, 480
BstMWI GCNNNNNNNGC 2 cut(s) 41, 454
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 11, 168
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 261, 480
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 2 cut(s) 261, 480
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 2 cut(s) 74, 245
BtsCI GGATG 3 cut(s) 34, 70, 448
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 3 cut(s) 11, 128, 369
Csp6I GTAC 3 cut(s) 196, 235, 295
CviAII CATG 3 cut(s) 70, 232, 421
CviQI GTAC 3 cut(s) 196, 235, 295
DdeI CTNAG 4 cut(s) 177, 303, 370, 453
DinI GGCGCC 1 cut(s) 10
DpnI GATC 2 cut(s) 263, 482
DpnII GATC 2 cut(s) 261, 480
EaeI YGGCCR 1 cut(s) 72
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 457
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 183, 459
Eco31I GGTCTC 2 cut(s) 149, 222
Eco47III AGCGCT 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 2 cut(s) 152, 290
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 183, 459
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 3 cut(s) 73, 235, 424
FaiI YATR 5 cut(s) 71, 233, 249, 273, 422
FatI CATG 3 cut(s) 69, 231, 420
Fnu4HI GCNGC 2 cut(s) 7, 124
FokI GGATG 3 cut(s) 41, 77, 435
FriOI GRGCYC 2 cut(s) 183, 459
Fsp4HI GCNGC 2 cut(s) 7, 124
GlaI GCGC 3 cut(s) 10, 127, 368
GluI GCNGC 2 cut(s) 7, 124
HaeII RGCGCY 2 cut(s) 12, 370
HaeIII GGCC 2 cut(s) 74, 245
HapII CCGG 2 cut(s) 12, 484
HhaI GCGC 3 cut(s) 11, 128, 369
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 73, 235, 424
Hin6I GCGC 3 cut(s) 9, 126, 367
HinP1I GCGC 3 cut(s) 9, 126, 367
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 2 cut(s) 12, 484
Hpy166II GTNNAC 2 cut(s) 142, 229
Hpy188I TCNGA 2 cut(s) 91, 364
Hpy188III TCNNGA 6 cut(s) 154, 219, 290, 452, 460, 484
Hpy8I GTNNAC 2 cut(s) 142, 229
HpyAV CCTTC 2 cut(s) 139, 370
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 454
HpyF3I CTNAG 4 cut(s) 177, 303, 370, 453
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 73, 235, 424
HspAI GCGC 3 cut(s) 9, 126, 367
KasI GGCGCC 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 483
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 261, 480
LpnPI CCDG 9 cut(s) 25, 46, 155, 175, 182, 187, 189, 465, 497
LweI GCATC 2 cut(s) 301, 457
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 263, 482
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 261, 480
MboII GAAGA 4 cut(s) 28, 61, 64, 475
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 261, 480
MhlI GDGCHC 2 cut(s) 183, 459
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 210, 493
MluNI TGGCCA 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 7 cut(s) 55, 85, 88, 130, 161, 235, 334
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 74
MseI TTAA 2 cut(s) 141, 258
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 2 cut(s) 12, 484
MspR9I CCNGG 2 cut(s) 13, 170
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 41, 454
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 13
NdeII GATC 2 cut(s) 261, 480
NlaIII CATG 3 cut(s) 73, 235, 424
NlaIV GGNNCC 2 cut(s) 10, 174
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 152
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 8, 125
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 459
Psp1406I AACGTT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 10, 174
PsuI RGATCY 2 cut(s) 261, 480
RsaI GTAC 3 cut(s) 197, 236, 296
RsaNI GTAC 3 cut(s) 196, 235, 295
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 141, 258
SatI GCNGC 2 cut(s) 7, 124
Sau3AI GATC 2 cut(s) 261, 480
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 13, 170
SduI GDGCHC 2 cut(s) 183, 459
SetI ASST 6 cut(s) 81, 141, 178, 258, 388, 459
SfaNI GCATC 2 cut(s) 301, 457
SfcI CTRYAG 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 10
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 152, 458
SmoI CTYRAG 2 cut(s) 152, 458
Sse9I AATT 2 cut(s) 210, 493
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 3 cut(s) 6, 121, 124
SspDI GGCGCC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 459
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 11, 168
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 47, 132, 153, 220
TasI AATT 2 cut(s) 210, 493
TatI WGTACW 3 cut(s) 195, 234, 294
TauI GCSGC 2 cut(s) 9, 126
Tru1I TTAA 2 cut(s) 141, 258
Tru9I TTAA 2 cut(s) 141, 258
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.