Rw1G028430

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016099
Physical Location & Seq
Reverse (-)
56128564 .. 56130980
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028430.1

Sequence Viewer

Length: 507 bp
ATGAGCGGCGCGGGGAAGAAAGTGGTGGATGTGGCTTTCAAAGCCTCGAAGAAGATTGACTGGGATGGCATGGCCAAGCTTATCGTCTCCGAGGAGGCCCGCAAGGAGTTCGCCTCTCTCCGCCGCGCCTTCGATGAGGTTAACACCACCCTCGAGACCAAGTTCAGCCAGGAACCTGAGCCCATTGACTGGGAGTACTACAGGAAAGGAATTGGGTCTCGATTGGTGGACATGTACAAAGAGGCCTATGACAACGTTAAGATCCCCAAGTATGTGGATACAGTCACTCCCGAGTACAAGCCTAAGTTTGATGCATTGTTGGTGGAACTAAAGGAAGCAGAAGAAAAATCTTTGAAGGAGTCAGAGCGCTTAGAGAAGGAGATAGCTGAAGTAAAAGAGTTGAAGCAAAAGATTGCTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTCAAGAAGAAGTTTGATGATGAGATCCGAAATGACAATTGGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
Mt_ATP-synt_D

Protein Analysis

168

Amino Acids

19.67

Weight (kDa)

5.24

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mt_ATP-synt_D PF05873 15 - 157 6.9e-19 ATP synthase D chain, mitochondrial (ATP5H)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52300
fragaria_vesca FvH4_7g20110
malus_domestica MD01G1130700.v1.1 MD07G1178800.v1.1
prunus_persica Prupe.2G217900_v2.0.a1
pyrus_communis pycom01g13950 pycom07g17250
rosa_chinensis RchiOBHm_Chr1g0364071
rosa_laevigata RLG00000027519
rosa_multiflora Rmu_sc0000071.1_g000026
rosa_roxburghii Rroxscaffold_4G00292670
rosa_rugosa Rorug01G0313300
rosa_samantha Rh1AG320700 Rh1CG300300
rosa_wichuraiana Rw1G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 2 cut(s) 11, 126
AciI CCGC 5 cut(s) 6, 11, 100, 121, 124
AclI AACGTT 1 cut(s) 255
AclWI GGATC 2 cut(s) 256, 475
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 3 cut(s) 197, 236, 296
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 3 cut(s) 40, 355, 403
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 79, 386, 457
AluI AGCT 3 cut(s) 79, 386, 457
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 91, 149, 222
AlwI GGATC 2 cut(s) 256, 475
Ama87I CYCGRG 2 cut(s) 152, 290
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 3 cut(s) 72, 96, 243
AspLEI GCGC 3 cut(s) 11, 128, 369
AspS9I GGNCC 1 cut(s) 97
AvaI CYCGRG 2 cut(s) 152, 290
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 2 cut(s) 183, 459
Bbv12I GWGCWC 1 cut(s) 459
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 91, 149, 222
BfmI CTRYAG 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 370
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 2 cut(s) 7, 124
BlsI GCNGC 2 cut(s) 8, 125
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 170
BmeT110I CYCGRG 2 cut(s) 152, 290
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 2 cut(s) 70, 199
BmsI GCATC 2 cut(s) 301, 457
BmuI ACTGGG 2 cut(s) 70, 199
BplI GAGNNNNNCTC 2 cut(s) 98, 130
Bpu10I CCTNAGC 2 cut(s) 177, 453
BpuEI CTTGAG 1 cut(s) 443
BsaI GGTCTC 2 cut(s) 149, 222
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 65, 194
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 34, 70, 448
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 168, 444
BseNI ACTGG 2 cut(s) 65, 194
BseRI GAGGAG 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 11, 126
BshFI GGCC 3 cut(s) 74, 98, 245
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 152, 290
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 3 cut(s) 91, 149, 222
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 3 cut(s) 74, 98, 245
Bso31I GGTCTC 2 cut(s) 149, 222
BsoBI CYCGRG 2 cut(s) 152, 290
Bsp1286I GDGCHC 2 cut(s) 183, 459
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 261, 480
BspACI CCGC 5 cut(s) 6, 11, 100, 121, 124
BspANI GGCC 3 cut(s) 74, 98, 245
BspCNI CTCAG 2 cut(s) 169, 445
BspFNI CGCG 2 cut(s) 11, 126
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 256, 475
BspTNI GGTCTC 2 cut(s) 149, 222
BsrBI CCGCTC 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 65, 194
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 261, 480
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 177, 303, 370, 453
BstF5I GGATG 3 cut(s) 34, 70, 448
BstFNI CGCG 2 cut(s) 11, 126
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 3 cut(s) 11, 128, 369
BstKTI GATC 2 cut(s) 264, 483
BstMAI GTCTC 3 cut(s) 91, 149, 222
BstMBI GATC 2 cut(s) 261, 480
BstMWI GCNNNNNNNGC 2 cut(s) 41, 454
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 2 cut(s) 11, 126
BstX2I RGATCY 2 cut(s) 261, 480
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 2 cut(s) 261, 480
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 3 cut(s) 74, 98, 245
BtsCI GGATG 3 cut(s) 34, 70, 448
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 3 cut(s) 11, 128, 369
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 3 cut(s) 196, 235, 295
CviAII CATG 3 cut(s) 70, 232, 421
CviQI GTAC 3 cut(s) 196, 235, 295
DdeI CTNAG 4 cut(s) 177, 303, 370, 453
DpnI GATC 2 cut(s) 263, 482
DpnII GATC 2 cut(s) 261, 480
EaeI YGGCCR 1 cut(s) 72
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 457
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 183, 459
Eco31I GGTCTC 2 cut(s) 149, 222
Eco47III AGCGCT 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 2 cut(s) 152, 290
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 183, 459
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 3 cut(s) 73, 235, 424
FaiI YATR 5 cut(s) 71, 233, 249, 273, 422
FatI CATG 3 cut(s) 69, 231, 420
FauI CCCGC 2 cut(s) 4, 107
Fnu4HI GCNGC 2 cut(s) 7, 124
FokI GGATG 3 cut(s) 41, 77, 435
FriOI GRGCYC 2 cut(s) 183, 459
Fsp4HI GCNGC 2 cut(s) 7, 124
GlaI GCGC 3 cut(s) 10, 127, 368
GluI GCNGC 2 cut(s) 7, 124
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 3 cut(s) 74, 98, 245
HhaI GCGC 3 cut(s) 11, 128, 369
Hin1II CATG 3 cut(s) 73, 235, 424
Hin6I GCGC 3 cut(s) 9, 126, 367
HinP1I GCGC 3 cut(s) 9, 126, 367
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 142, 229
Hpy188I TCNGA 3 cut(s) 91, 364, 485
Hpy188III TCNNGA 5 cut(s) 154, 219, 290, 452, 460
Hpy8I GTNNAC 2 cut(s) 142, 229
HpyAV CCTTC 3 cut(s) 139, 349, 370
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 454
HpyF3I CTNAG 4 cut(s) 177, 303, 370, 453
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 73, 235, 424
HspAI GCGC 3 cut(s) 9, 126, 367
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 261, 480
LpnPI CCDG 7 cut(s) 46, 155, 175, 182, 187, 189, 465
LweI GCATC 2 cut(s) 301, 457
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 263, 482
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 261, 480
MboII GAAGA 5 cut(s) 28, 61, 64, 353, 475
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 261, 480
MhlI GDGCHC 2 cut(s) 183, 459
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 210, 493
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 7 cut(s) 55, 85, 88, 124, 130, 161, 235
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 316
MscI TGGCCA 1 cut(s) 74
MseI TTAA 2 cut(s) 141, 258
Msp20I TGGCCA 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 11, 126
MwoI GCNNNNNNNGC 2 cut(s) 41, 454
NdeII GATC 2 cut(s) 261, 480
NlaIII CATG 3 cut(s) 73, 235, 424
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 152
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 8, 125
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 459
Psp1406I AACGTT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 2 cut(s) 261, 480
RsaI GTAC 3 cut(s) 197, 236, 296
RsaNI GTAC 3 cut(s) 196, 235, 295
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 141, 258
SatI GCNGC 2 cut(s) 7, 124
Sau3AI GATC 2 cut(s) 261, 480
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 183, 459
SetI ASST 6 cut(s) 81, 141, 178, 258, 388, 459
SfaNI GCATC 2 cut(s) 301, 457
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 152, 458
SmoI CTYRAG 2 cut(s) 152, 458
Sse9I AATT 2 cut(s) 210, 493
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 5 cut(s) 6, 11, 100, 121, 124
SstI GAGCTC 1 cut(s) 459
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 47, 132, 153, 220
TasI AATT 2 cut(s) 210, 493
TatI WGTACW 3 cut(s) 195, 234, 294
TauI GCSGC 2 cut(s) 9, 126
Tru1I TTAA 2 cut(s) 141, 258
Tru9I TTAA 2 cut(s) 141, 258
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.