FvH4_7g20240

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018074
Physical Location & Seq
Reverse (-)
16487049 .. 16491415
4367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20240.t1

Sequence Viewer

Length: 870 bp
ATGACTGCTGTTGTGGAGAATCCGAAAGAGAAAGCTGTGAGTAATGCAGATCCAAATTTGGAGACAAGCTTGGAAAATTCCACCATGAAATCAAATGGAAAATGGCCAACAATGAAGGAAATTGTTGATCCTGAAGGACCATTCATTCCAGTGGAATATCATTTTTATAGTCTCATGTCTAAGAACTATTCTGCTTTATGGTCAGGAAGTTGCTCCTCCTTTTTACCTAACTTTAAGAAAATATTACCAGACATAGCTAAGACAATGTGGCAGTCGTACATTCTAATTGACATTTTAGCTGTTCTTCCCCTTCCACATGTAATGATTCTCATTTTCATTTCCAAATTGAGGGGCTCAGGATCCTTCAATGCAGGGCTTATGAACTTCTTTATTCTTGTACAATACGTGCCACGACTTCTGCGTATCTATCTATCCTGTAAAGAATCGAAAACGTCTTCCAGCCAAGATCCTCCAATATGGCTCAAAGGTGTACTCAATTTCTTTATGTACATCCTTGCTAGTCATCAACATTTGTATCTTACATTGGCGCTGAGTAGGTTGAGGAAGGTTAACAAAATGCCATACAACGGTGGACTTGTAAGCATAGAAAAGAGGGATGCGTCTTGTACATTGCAACGAGGTGCGGGACAGATATATGGTGAACAAGTTCTCTGTTGGCCAGCATGGACATCTTTTCCAGGTATGTCAAATGAGTCGGCTAGAGCCATTGGTAATGTTAAAGTCCTTGTTCTCATGGCGAGTGACATGGAGCATGTAGGCTGCAAATTCAGATCAGAACTTGGTGGAGAGATCACCCTTCTATCTGATGCTAAGGGAGTATTTTGGATACCGACCGGGTGGCGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

290

Amino Acids

32.42

Weight (kDa)

9.04

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20240
malus_domestica MD07G1292000.v1.1
pyrus_communis pycom01g23140 pycom07g17620 pycom07g26420
rosa_chinensis RchiOBHm_Chr1g0336191
rosa_samantha Rh1AG327400 Rh1BG407000 Rh1CG299300 Rh1DG437700 Rh1DG438100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 644
AclWI GGATC 5 cut(s) 44, 122, 354, 367, 461
AcoI YGGCCR 2 cut(s) 104, 677
AcsI RAATTY 3 cut(s) 55, 76, 785
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 5 cut(s) 278, 399, 492, 509, 628
AfiI CCNNNNNNNGG 2 cut(s) 348, 587
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 4 cut(s) 35, 69, 257, 299
AluI AGCT 4 cut(s) 35, 69, 257, 299
Alw26I GTCTC 2 cut(s) 56, 176
AlwI GGATC 5 cut(s) 44, 122, 354, 367, 461
AoxI GGCC 2 cut(s) 104, 677
ApeKI GCWGC 1 cut(s) 780
ApoI RAATTY 3 cut(s) 55, 76, 785
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 856
AsuHPI GGTGA 2 cut(s) 671, 805
AvaII GGWCC 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 518, 551
BalI TGGCCA 2 cut(s) 106, 679
BamHI GGATCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 767
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 840
BcnI CCSGG 1 cut(s) 856
BcoDI GTCTC 2 cut(s) 56, 176
BfaI CTAG 3 cut(s) 519, 720, 868
BfoI RGCGCY 1 cut(s) 551
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 1 cut(s) 781
BlsI GCNGC 1 cut(s) 782
Bme1390I CCNGG 2 cut(s) 699, 856
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 699, 856
BmsI GCATC 3 cut(s) 607, 817, 854
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 2 cut(s) 355, 831
BpuMI CCSGG 1 cut(s) 856
BsaAI YACGTR 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 587
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 699
BseGI GGATG 2 cut(s) 510, 622
BseLI CCNNNNNNNGG 2 cut(s) 348, 587
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 369, 542
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 767
Bsh1285I CGRYCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 106, 679
BsiEI CGRYCG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 2 cut(s) 348, 587
BsmAI GTCTC 2 cut(s) 56, 176
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 2 cut(s) 106, 679
Bsp1286I GDGCHC 1 cut(s) 356
Bsp1407I TGTACA 3 cut(s) 397, 507, 626
Bsp143I GATC 6 cut(s) 49, 127, 359, 466, 791, 810
BspACI CCGC 1 cut(s) 644
BspANI GGCC 2 cut(s) 106, 679
BspCNI CTCAG 2 cut(s) 368, 543
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 5 cut(s) 44, 122, 354, 367, 461
BsrDI GCAATG 1 cut(s) 629
BsrGI TGTACA 3 cut(s) 397, 507, 626
BsrI ACTGG 1 cut(s) 149
BssMI GATC 6 cut(s) 49, 127, 359, 466, 791, 810
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 590
BstAUI TGTACA 3 cut(s) 397, 507, 626
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 5 cut(s) 180, 258, 355, 551, 831
BstF5I GGATG 2 cut(s) 510, 622
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 6 cut(s) 52, 130, 362, 469, 794, 813
BstMAI GTCTC 2 cut(s) 56, 176
BstMBI GATC 6 cut(s) 49, 127, 359, 466, 791, 810
BstMCI CGRYCG 1 cut(s) 855
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 2 cut(s) 320, 776
BstSCI CCNGG 2 cut(s) 697, 854
BstV1I GCAGC 1 cut(s) 767
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 3 cut(s) 49, 359, 466
BstYI RGATCY 3 cut(s) 49, 359, 466
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 2 cut(s) 106, 679
BtsCI GGATG 2 cut(s) 510, 622
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 681
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 609
Csp6I GTAC 5 cut(s) 277, 398, 491, 508, 627
CviAII CATG 7 cut(s) 85, 175, 317, 684, 754, 766, 773
CviQI GTAC 5 cut(s) 277, 398, 491, 508, 627
DdeI CTNAG 5 cut(s) 180, 258, 355, 551, 831
DpnI GATC 6 cut(s) 51, 129, 361, 468, 793, 812
DpnII GATC 6 cut(s) 49, 127, 359, 466, 791, 810
EaeI YGGCCR 2 cut(s) 104, 677
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 7 cut(s) 88, 178, 320, 687, 757, 769, 776
FaqI GGGAC 1 cut(s) 660
FatI CATG 7 cut(s) 84, 174, 316, 683, 753, 765, 772
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 1 cut(s) 781
FokI GGATG 2 cut(s) 497, 629
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 781
FspBI CTAG 3 cut(s) 519, 720, 868
GlaI GCGC 1 cut(s) 549
GluI GCNGC 1 cut(s) 781
HaeII RGCGCY 1 cut(s) 551
HaeIII GGCC 2 cut(s) 106, 679
HapII CCGG 1 cut(s) 855
HgaI GACGC 1 cut(s) 609
HhaI GCGC 1 cut(s) 550
Hin1II CATG 7 cut(s) 88, 178, 320, 687, 757, 769, 776
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 4 cut(s) 19, 325, 443, 713
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 1 cut(s) 855
HphI GGTGA 2 cut(s) 671, 805
Hpy166II GTNNAC 4 cut(s) 491, 571, 593, 662
Hpy188I TCNGA 4 cut(s) 24, 791, 796, 826
Hpy188III TCNNGA 3 cut(s) 131, 204, 357
Hpy8I GTNNAC 4 cut(s) 491, 571, 593, 662
HpyAV CCTTC 6 cut(s) 109, 128, 320, 373, 559, 827
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 2 cut(s) 405, 452
HpyCH4V TGCA 4 cut(s) 47, 371, 634, 783
HpyF3I CTNAG 5 cut(s) 180, 258, 355, 551, 831
HpySE526I ACGT 2 cut(s) 405, 452
Hsp92II CATG 7 cut(s) 88, 178, 320, 687, 757, 769, 776
HspAI GCGC 1 cut(s) 548
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 6 cut(s) 49, 127, 359, 466, 791, 810
LmnI GCTCC 2 cut(s) 218, 769
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 3 cut(s) 607, 817, 854
MaeI CTAG 3 cut(s) 519, 720, 868
MaeII ACGT 2 cut(s) 405, 452
MaeIII GTNAC 1 cut(s) 761
MalI GATC 6 cut(s) 51, 129, 361, 468, 793, 812
MboI GATC 6 cut(s) 49, 127, 359, 466, 791, 810
MboII GAAGA 2 cut(s) 296, 447
MflI RGATCY 3 cut(s) 49, 359, 466
MhlI GDGCHC 1 cut(s) 356
MlsI TGGCCA 2 cut(s) 106, 679
MluCI AATT 7 cut(s) 55, 76, 120, 285, 344, 496, 785
MluNI TGGCCA 2 cut(s) 106, 679
MlyI GAGTC 1 cut(s) 722
MnlI CCTC 6 cut(s) 226, 342, 480, 555, 606, 632
Mox20I TGGCCA 2 cut(s) 106, 679
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 2 cut(s) 106, 679
MseI TTAA 3 cut(s) 234, 570, 738
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 2 cut(s) 106, 679
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 2 cut(s) 699, 856
MvaI CCWGG 1 cut(s) 699
NciI CCSGG 1 cut(s) 856
NdeII GATC 6 cut(s) 49, 127, 359, 466, 791, 810
NlaIII CATG 7 cut(s) 88, 178, 320, 687, 757, 769, 776
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 761
NspI RCATGY 2 cut(s) 320, 776
PciI ACATGT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 19, 325, 443
PkrI GCNGC 1 cut(s) 782
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
Ppu21I YACGTR 1 cut(s) 406
PscI ACATGT 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 3 cut(s) 49, 359, 466
RsaI GTAC 5 cut(s) 278, 399, 492, 509, 628
RsaNI GTAC 5 cut(s) 277, 398, 491, 508, 627
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 3 cut(s) 234, 570, 738
SatI GCNGC 1 cut(s) 781
Sau3AI GATC 6 cut(s) 49, 127, 359, 466, 791, 810
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 2 cut(s) 699, 856
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 3 cut(s) 607, 817, 854
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 7 cut(s) 55, 76, 120, 285, 344, 496, 785
SsiI CCGC 1 cut(s) 644
SspI AATATT 1 cut(s) 243
SspMI CTAG 3 cut(s) 519, 720, 868
StyD4I CCNGG 2 cut(s) 697, 854
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 2 cut(s) 408, 455
TaqI TCGA 1 cut(s) 446
TasI AATT 7 cut(s) 55, 76, 120, 285, 344, 496, 785
TatI WGTACW 4 cut(s) 397, 490, 507, 626
TfiI GAWTC 3 cut(s) 19, 325, 443
Tru1I TTAA 3 cut(s) 234, 570, 738
Tru9I TTAA 3 cut(s) 234, 570, 738
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 1 cut(s) 780
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 5 cut(s) 101, 128, 133, 325, 395
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 3 cut(s) 55, 76, 785
XceI RCATGY 2 cut(s) 320, 776
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 519, 720, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.