Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20240 |
| malus_domestica | MD07G1292000.v1.1 |
| pyrus_communis | pycom01g23140 pycom07g17620 pycom07g26420 |
| rosa_chinensis | RchiOBHm_Chr1g0336191 |
| rosa_samantha | Rh1AG327400 Rh1BG407000 Rh1CG299300 Rh1DG437700 Rh1DG438100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 227 |
| AcsI | RAATTY | 2 cut(s) | 175, 369 |
| AgsI | TTSAA | 2 cut(s) | 337, 439 |
| AhlI | ACTAGT | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 159 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 94, 126 |
| AluBI | AGCT | 2 cut(s) | 126, 251 |
| AluI | AGCT | 2 cut(s) | 126, 251 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| ApeKI | GCWGC | 1 cut(s) | 251 |
| ApoI | RAATTY | 2 cut(s) | 175, 369 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 112, 144 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 176 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 1 cut(s) | 280 |
| BbvI | GCAGC | 1 cut(s) | 238 |
| BccI | CCATC | 3 cut(s) | 7, 85, 145 |
| BciT130I | CCWGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BcuI | ACTAGT | 1 cut(s) | 277 |
| BfaI | CTAG | 3 cut(s) | 123, 248, 278 |
| BisI | GCNGC | 1 cut(s) | 252 |
| BlsI | GCNGC | 1 cut(s) | 253 |
| Bme1390I | CCNGG | 1 cut(s) | 161 |
| BmrFI | CCNGG | 1 cut(s) | 161 |
| BpiI | GAAGAC | 1 cut(s) | 280 |
| BsaAI | YACGTR | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 159 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| BseBI | CCWGG | 1 cut(s) | 161 |
| BseDI | CCNNGG | 2 cut(s) | 141, 159 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseXI | GCAGC | 1 cut(s) | 238 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BspQI | GCTCTTC | 1 cut(s) | 261 |
| BssECI | CCNNGG | 2 cut(s) | 141, 159 |
| Bst2UI | CCWGG | 1 cut(s) | 161 |
| Bst6I | CTCTTC | 1 cut(s) | 261 |
| BstBAI | YACGTR | 1 cut(s) | 469 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstNI | CCWGG | 1 cut(s) | 161 |
| BstSCI | CCNGG | 1 cut(s) | 159 |
| BstV1I | GCAGC | 1 cut(s) | 238 |
| BstV2I | GAAGAC | 1 cut(s) | 280 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsI | GCAGTG | 1 cut(s) | 221 |
| BtsIMutI | CAGTG | 2 cut(s) | 221, 237 |
| CfoI | GCGC | 1 cut(s) | 228 |
| CviAII | CATG | 2 cut(s) | 325, 413 |
| CviJI | RGCY | 6 cut(s) | 23, 126, 140, 155, 251, 306 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 126, 140, 155, 251, 306 |
| Eam1104I | CTCTTC | 1 cut(s) | 261 |
| EarI | CTCTTC | 1 cut(s) | 261 |
| EcoRII | CCWGG | 1 cut(s) | 159 |
| FaeI | CATG | 2 cut(s) | 328, 416 |
| FatI | CATG | 2 cut(s) | 324, 412 |
| Fnu4HI | GCNGC | 1 cut(s) | 252 |
| FokI | GGATG | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 1 cut(s) | 252 |
| FspBI | CTAG | 3 cut(s) | 123, 248, 278 |
| FspI | TGCGCA | 1 cut(s) | 227 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 1 cut(s) | 252 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1II | CATG | 2 cut(s) | 328, 416 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HinfI | GANTC | 2 cut(s) | 167, 409 |
| Hpy166II | GTNNAC | 2 cut(s) | 120, 211 |
| Hpy188I | TCNGA | 3 cut(s) | 72, 82, 145 |
| Hpy188III | TCNNGA | 2 cut(s) | 309, 393 |
| Hpy8I | GTNNAC | 2 cut(s) | 120, 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 468 |
| HpyCH4V | TGCA | 1 cut(s) | 203 |
| HpySE526I | ACGT | 1 cut(s) | 468 |
| Hsp92II | CATG | 2 cut(s) | 328, 416 |
| HspAI | GCGC | 1 cut(s) | 226 |
| LguI | GCTCTTC | 1 cut(s) | 261 |
| LpnPI | CCDG | 6 cut(s) | 27, 39, 146, 173, 254, 294 |
| Lsp1109I | GCAGC | 1 cut(s) | 238 |
| MaeI | CTAG | 3 cut(s) | 123, 248, 278 |
| MaeII | ACGT | 1 cut(s) | 468 |
| MaeIII | GTNAC | 3 cut(s) | 44, 219, 464 |
| MboII | GAAGA | 7 cut(s) | 176, 248, 280, 283, 338, 340, 381 |
| MluCI | AATT | 5 cut(s) | 175, 214, 369, 439, 489 |
| MlyI | GAGTC | 1 cut(s) | 418 |
| MmeI | TCCRAC | 1 cut(s) | 50 |
| MnlI | CCTC | 2 cut(s) | 151, 296 |
| MroXI | GAANNNNTTC | 1 cut(s) | 176 |
| MseI | TTAA | 2 cut(s) | 6, 426 |
| MspR9I | CCNGG | 1 cut(s) | 161 |
| MvaI | CCWGG | 1 cut(s) | 161 |
| NlaIII | CATG | 2 cut(s) | 328, 416 |
| NmuCI | GTSAC | 2 cut(s) | 219, 464 |
| NsbI | TGCGCA | 1 cut(s) | 227 |
| PciSI | GCTCTTC | 1 cut(s) | 261 |
| PdmI | GAANNNNTTC | 1 cut(s) | 176 |
| PfeI | GAWTC | 1 cut(s) | 167 |
| PkrI | GCNGC | 1 cut(s) | 253 |
| PleI | GAGTC | 1 cut(s) | 417 |
| PpsI | GAGTC | 1 cut(s) | 417 |
| Ppu21I | YACGTR | 1 cut(s) | 469 |
| Psp6I | CCWGG | 1 cut(s) | 159 |
| PspGI | CCWGG | 1 cut(s) | 159 |
| SapI | GCTCTTC | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 6, 426 |
| SatI | GCNGC | 1 cut(s) | 252 |
| SchI | GAGTC | 1 cut(s) | 418 |
| ScrFI | CCNGG | 1 cut(s) | 161 |
| SetI | ASST | 6 cut(s) | 46, 128, 253, 273, 387, 471 |
| SpeI | ACTAGT | 1 cut(s) | 277 |
| Sse9I | AATT | 5 cut(s) | 175, 214, 369, 439, 489 |
| SspI | AATATT | 1 cut(s) | 359 |
| SspMI | CTAG | 3 cut(s) | 123, 248, 278 |
| StyD4I | CCNGG | 1 cut(s) | 159 |
| TaiI | ACGT | 1 cut(s) | 471 |
| TaqI | TCGA | 5 cut(s) | 11, 136, 170, 318, 392 |
| TasI | AATT | 5 cut(s) | 175, 214, 369, 439, 489 |
| TfiI | GAWTC | 1 cut(s) | 167 |
| Tru1I | TTAA | 2 cut(s) | 6, 426 |
| Tru9I | TTAA | 2 cut(s) | 6, 426 |
| TscAI | CASTG | 2 cut(s) | 228, 244 |
| TseFI | GTSAC | 2 cut(s) | 219, 464 |
| TseI | GCWGC | 1 cut(s) | 251 |
| Tsp45I | GTSAC | 2 cut(s) | 219, 464 |
| TspDTI | ATGAA | 2 cut(s) | 33, 341 |
| TspRI | CASTG | 2 cut(s) | 228, 244 |
| XapI | RAATTY | 2 cut(s) | 175, 369 |
| XmnI | GAANNNNTTC | 1 cut(s) | 176 |
| XspI | CTAG | 3 cut(s) | 123, 248, 278 |