Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018074

Physical Location & Seq

Genomic Coordinates Reverse (-)

64859310 .. 64862986

Gene Structure 3677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATTAACTCGATGGATGAAGCCCCAGAAGTAAGTCTCACAGGTTACACTACTCATTATGGATATGGTCGGAAACCATCAGAAGTGAAAAAAACGAAAAGGAGATTTAGTTCGTGGTGGACTAGCTTTTCGGTTCGAGCCTCGGATAAGATGGCTACCCAGGAAGAATCGAAAAATTTCTGTTTCTTTGATTATGTTGTTGCAATAGTTCACAATTTGTCACTGCGCAATCTCATCACTGACATTCTAGCTGCTCTTCCTATCCCACAGGTGCTACTAGTTTTTGTCTTCTTCCAAATGAGAGGCTCTGGATATTTCGACCACATGAAGATTTTGAACTTCTTTCTTCTCGCTCAATATTTGCCAAGAATTTATCATATACACCTATCTTCGAGAAAACTTACAAAGAGTCATGGAATATGGATTAAAGGACTATTCAATTTCTTTCTCTATATCTTGGCAAGTCACATTAGTCAATTACCAACTTGCATTAAGAGCAATGGCGGAGCCTCATTGTTGCTTGAAATGGCCATGGCCCCTCCAAGCTTCCACATGGTTGTATATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

189

Amino Acids

21.74

Weight (kDa)

9.57

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018074)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20240
malus_domestica	MD07G1292000.v1.1
pyrus_communis	pycom01g23140 pycom07g17620 pycom07g26420
rosa_chinensis	RchiOBHm_Chr1g0336191
rosa_samantha	Rh1AG327400 Rh1BG407000 Rh1CG299300 Rh1DG437700 Rh1DG438100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
AciI	CCGC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	175, 369
AgsI	TTSAA	3 cut(s)	337, 439, 524
AhlI	ACTAGT	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	3 cut(s)	126, 251, 546
AluI	AGCT	3 cut(s)	126, 251, 546
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	528, 534
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	175, 369
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	7, 85, 145
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	3 cut(s)	123, 248, 278
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	2 cut(s)	508, 537
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	141, 159, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	141, 159, 531
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	530, 536
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	530, 536
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	2 cut(s)	530, 536
BspLI	GGNNCC	2 cut(s)	508, 537
BspQI	GCTCTTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	505
BssECI	CCNNGG	3 cut(s)	141, 159, 531
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	530, 536
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	221, 237
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	535
CviAII	CATG	4 cut(s)	325, 413, 532, 553
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	4 cut(s)	328, 416, 535, 556
FatI	CATG	4 cut(s)	324, 412, 531, 552
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	123, 248, 278
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	530, 536
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	328, 416, 535, 556
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	2 cut(s)	167, 409
Hpy166II	GTNNAC	2 cut(s)	120, 211
Hpy188I	TCNGA	3 cut(s)	72, 82, 145
Hpy188III	TCNNGA	2 cut(s)	309, 393
Hpy8I	GTNNAC	2 cut(s)	120, 211
HpyCH4V	TGCA	2 cut(s)	203, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	328, 416, 535, 556
HspAI	GCGC	1 cut(s)	226
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	6 cut(s)	27, 39, 146, 173, 254, 294
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	123, 248, 278
MaeIII	GTNAC	3 cut(s)	44, 219, 464
MboII	GAAGA	7 cut(s)	176, 248, 280, 283, 338, 340, 381
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	6 cut(s)	175, 214, 369, 439, 476, 565
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	151, 296, 520, 549
Mox20I	TGGCCA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	3 cut(s)	6, 426, 492
Msp20I	TGGCCA	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	531
NlaIII	CATG	4 cut(s)	328, 416, 535, 556
NlaIV	GGNNCC	2 cut(s)	508, 537
NmuCI	GTSAC	2 cut(s)	219, 464
NsbI	TGCGCA	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	508, 537
PspPI	GGNCC	1 cut(s)	535
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	6, 426, 492
SatI	GCNGC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	535
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	6 cut(s)	46, 128, 253, 273, 387, 548
SpeI	ACTAGT	1 cut(s)	277
Sse9I	AATT	6 cut(s)	175, 214, 369, 439, 476, 565
SsiI	CCGC	1 cut(s)	504
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	3 cut(s)	123, 248, 278
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	531
TaqI	TCGA	5 cut(s)	11, 136, 170, 318, 392
TasI	AATT	6 cut(s)	175, 214, 369, 439, 476, 565
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	6, 426, 492
Tru9I	TTAA	3 cut(s)	6, 426, 492
TscAI	CASTG	2 cut(s)	228, 244
TseFI	GTSAC	2 cut(s)	219, 464
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	219, 464
TspDTI	ATGAA	2 cut(s)	33, 341
TspRI	CASTG	2 cut(s)	228, 244
XapI	RAATTY	2 cut(s)	175, 369
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	3 cut(s)	123, 248, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.