pycom01g23140

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0018074
Physical Location & Seq
Reverse (-)
20567255 .. 20568454
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23140.4

Sequence Viewer

Length: 735 bp
ATGGCCTCAAATACCCTGACACTTGTGGCCCCAAGTACCCTAAGACCTGGGGCCTTAAGTACCCTGAACACTGAGACCTCCATACAAACTAAAGGAAATTTGGATCGGAAATCAAAAGGAAGAGTGTTGATTGAATTTGGCAAGAAAATAGTTCAAAAGATGTCGCGGTTATCTTTCTCCATCATAAATGATTTTCTCGCTCTTGTTCCCGTCCCACAATTGCTAATAGTATATACTTTTTACAATATGAGAGGCGATGCATATGTAGAACATAAAAAGGTTCTTAATGTCTTCCTTCTTGGTCAATATCCACCAAGGATATATCGAATTCACCAGTCGTCCAAGGAACTTCGAAAGAATGCTGGAATATGGGTTAAAGGTCTCTTCAATTTTTTTCTCTACATTCTTGCCAGTCATGTAAGTTTCTTCTTTTCTATTCAGCGAGAGACATCATGCTGGCACAGTGCATGTGCAAAACATAGTCCAGATCGTATTGGATGTATGAATACTTTCTCCTGTCAACGTCGAACTACTACTTCGAGAAATAAAACATTTCTAAAAAAGCATTGCTCGATAAATGCTACAGATGAAGGTTCCTATGATTTTGGAATATTTCGTGATGCTCTTAAGAATCATAACTTAGAGCATATCAAGTTTGGAAATAAGTTTTTTAACTCTTTCTGGTGGGGCACAGTATCATTTAGATTGCTTGATCAAGTAACTACTCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

245

Amino Acids

28.06

Weight (kDa)

9.99

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20240
malus_domestica MD07G1292000.v1.1
pyrus_communis pycom01g23140 pycom07g17620 pycom07g26420
rosa_chinensis RchiOBHm_Chr1g0336191
rosa_samantha Rh1AG327400 Rh1BG407000 Rh1CG299300 Rh1DG437700 Rh1DG438100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 3 cut(s) 97, 134, 327
AfaI GTAC 2 cut(s) 37, 61
AflII CTTAAG 2 cut(s) 55, 626
AgsI TTSAA 3 cut(s) 134, 155, 388
AjnI CCWGG 1 cut(s) 46
Alw26I GTCTC 3 cut(s) 68, 386, 440
AlwI GGATC 1 cut(s) 111
AoxI GGCC 3 cut(s) 3, 27, 51
ApoI RAATTY 3 cut(s) 97, 134, 327
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 28, 51
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 283
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 3 cut(s) 68, 386, 440
BfmI CTRYAG 1 cut(s) 582
BfrI CTTAAG 2 cut(s) 55, 626
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 28, 51
BmiI GGNNCC 3 cut(s) 30, 52, 595
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 247, 610
BpiI GAAGAC 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 352
BsaI GGTCTC 2 cut(s) 68, 386
BsaJI CCNNGG 3 cut(s) 47, 314, 342
Bse1I ACTGG 2 cut(s) 334, 411
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 47, 314, 342
BseGI GGATG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 334, 411
BseSI GKGCMC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 5, 29, 53
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 68, 386, 440
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 3 cut(s) 5, 29, 53
Bso31I GGTCTC 2 cut(s) 68, 386
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 103, 487, 712
BspACI CCGC 1 cut(s) 166
BspANI GGCC 3 cut(s) 5, 29, 53
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 30, 52, 595
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 352
BspTI CTTAAG 2 cut(s) 55, 626
BspTNI GGTCTC 2 cut(s) 68, 386
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 2 cut(s) 334, 411
BssECI CCNNGG 3 cut(s) 47, 314, 342
BssMI GATC 3 cut(s) 103, 487, 712
BssT1I CCWWGG 2 cut(s) 314, 342
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 464, 694
Bst6I CTCTTC 2 cut(s) 115, 389
BstAFI CTTAAG 2 cut(s) 55, 626
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 41, 72, 640
BstF5I GGATG 1 cut(s) 503
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 3 cut(s) 106, 490, 715
BstMAI GTCTC 3 cut(s) 68, 386, 440
BstMBI GATC 3 cut(s) 103, 487, 712
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 283
BsuRI GGCC 3 cut(s) 5, 29, 53
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 69, 469
Cac8I GCNNGC 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 28, 51
Csp6I GTAC 2 cut(s) 36, 60
CviAII CATG 3 cut(s) 416, 453, 468
CviJI RGCY 3 cut(s) 5, 29, 53
CviKI_1 RGCY 3 cut(s) 5, 29, 53
CviQI GTAC 2 cut(s) 36, 60
DdeI CTNAG 3 cut(s) 41, 72, 640
DpnI GATC 3 cut(s) 105, 489, 714
DpnII GATC 3 cut(s) 103, 487, 712
Eam1104I CTCTTC 2 cut(s) 115, 389
EarI CTCTTC 2 cut(s) 115, 389
Eco130I CCWWGG 2 cut(s) 314, 342
Eco31I GGTCTC 2 cut(s) 68, 386
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 314, 342
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 314, 342
FaeI CATG 3 cut(s) 419, 456, 471
FaqI GGGAC 1 cut(s) 197
FatI CATG 3 cut(s) 415, 452, 467
FauNDI CATATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 712
FokI GGATG 1 cut(s) 510
HaeIII GGCC 3 cut(s) 5, 29, 53
Hin1II CATG 3 cut(s) 419, 456, 471
HincII GTYRAC 1 cut(s) 521
HindII GTYRAC 1 cut(s) 521
HinfI GANTC 1 cut(s) 631
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 485, 540, 617
Hpy8I GTNNAC 1 cut(s) 521
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 2 cut(s) 305, 584
HpyCH4III ACNGT 2 cut(s) 464, 694
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 260, 467, 473
HpyF3I CTNAG 3 cut(s) 41, 72, 640
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 3 cut(s) 419, 456, 471
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 3 cut(s) 103, 487, 712
LweI GCATC 2 cut(s) 247, 610
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 105, 489, 714
MboI GATC 3 cut(s) 103, 487, 712
MboII GAAGA 4 cut(s) 132, 283, 376, 418
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 5 cut(s) 97, 134, 218, 327, 388
MnlI CCTC 3 cut(s) 16, 88, 245
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 5 cut(s) 56, 285, 375, 627, 672
MspCI CTTAAG 2 cut(s) 55, 626
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 166
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 103, 487, 712
NlaIII CATG 3 cut(s) 419, 456, 471
NlaIV GGNNCC 3 cut(s) 30, 52, 595
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 471
NspV TTCGAA 1 cut(s) 352
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 3 cut(s) 30, 52, 595
PspPI GGNCC 2 cut(s) 28, 51
RsaI GTAC 2 cut(s) 37, 61
RsaNI GTAC 2 cut(s) 36, 60
SaqAI TTAA 5 cut(s) 56, 285, 375, 627, 672
Sau3AI GATC 3 cut(s) 103, 487, 712
Sau96I GGNCC 2 cut(s) 28, 51
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 692
SetI ASST 6 cut(s) 49, 80, 282, 382, 526, 595
SfaNI GCATC 2 cut(s) 247, 610
SfcI CTRYAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 55, 626
SmoI CTYRAG 2 cut(s) 55, 626
Sse9I AATT 5 cut(s) 97, 134, 218, 327, 388
SsiI CCGC 1 cut(s) 166
SspI AATATT 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 2 cut(s) 314, 342
TaaI ACNGT 2 cut(s) 464, 694
TaiI ACGT 1 cut(s) 526
TaqI TCGA 5 cut(s) 325, 352, 526, 539, 572
TasI AATT 5 cut(s) 97, 134, 218, 327, 388
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 5 cut(s) 56, 285, 375, 627, 672
Tru9I TTAA 5 cut(s) 56, 285, 375, 627, 672
TscAI CASTG 2 cut(s) 76, 469
TspDTI ATGAA 2 cut(s) 518, 603
TspRI CASTG 2 cut(s) 76, 469
Vha464I CTTAAG 2 cut(s) 55, 626
XapI RAATTY 3 cut(s) 97, 134, 327
XceI RCATGY 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.