Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018074

Physical Location & Seq

Genomic Coordinates Reverse (-)

64795747 .. 64812898

Gene Structure 17152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATCGCTGCAGCCCCCGATAAGATGGCTAACCAGGAAGAACCGAAGTCTTCCGATTTATTTAAAGGACCCTTCTTTAAACGTGTCGGTGCAATAGTTGACAATTTGTCATGGCGCTCTCTCATAACTGACATTCTAGCTGTTCTTCCTATCCCACAGGTGCTACTACTTGTTGTCTTCTTTAAAATGAGAGGCTCTGGATATTTGAACCACAGAAAGATTTTGAATTTCTTTCTTCTCCTTCAATATTTGGCAAGAATTTATCGTATTCACCTATCTTCCAAAAAACTTACAAAGAGTCATGGAATATGGATTAAAGGACTATTCAATTTATTTCTCTATATCTTTGCAAGTCACGCTACACCAAAACTTAGTGAAGACAAAGTTAGGCAGTGCATTGATGCAAGACTAGGAGGACATAGTGAAGACAAAGTTGGGCAGGATCAAATTTTGAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

153

Amino Acids

17.44

Weight (kDa)

9.85

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018074)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20240
malus_domestica	MD07G1292000.v1.1
pyrus_communis	pycom01g23140 pycom07g17620 pycom07g26420
rosa_chinensis	RchiOBHm_Chr1g0336191
rosa_samantha	Rh1AG327400 Rh1BG407000 Rh1CG299300 Rh1DG437700 Rh1DG438100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	4 cut(s)	226, 258, 447, 454
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	208, 226, 245, 328, 454
AhdI	GACNNNNNGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	8, 11
ApoI	RAATTY	4 cut(s)	226, 258, 447, 454
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	68
BbsI	GAAGAC	4 cut(s)	42, 169, 384, 432
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	2 cut(s)	137, 410
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	9, 12
BlsI	GCNGC	2 cut(s)	10, 13
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	68
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	4 cut(s)	42, 169, 384, 432
BseBI	CCWGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	3, 442
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	450
BssMI	GATC	2 cut(s)	3, 442
Bst2UI	CCWGG	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	6, 445
BstMBI	GATC	2 cut(s)	3, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	4 cut(s)	42, 169, 384, 432
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	68
CviAII	CATG	2 cut(s)	111, 302
CviJI	RGCY	4 cut(s)	14, 29, 140, 195
CviKI_1	RGCY	4 cut(s)	14, 29, 140, 195
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	2 cut(s)	5, 444
DpnII	GATC	2 cut(s)	3, 442
DraI	TTTAAA	3 cut(s)	64, 79, 184
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	114, 305
FaiI	YATR	7 cut(s)	112, 125, 303, 310, 342, 420, 460
FatI	CATG	2 cut(s)	110, 301
Fnu4HI	GCNGC	2 cut(s)	9, 12
Fsp4HI	GCNGC	2 cut(s)	9, 12
FspBI	CTAG	2 cut(s)	137, 410
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	9, 12
HaeII	RGCGCY	1 cut(s)	118
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	114, 305
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	298
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	82, 251
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	5 cut(s)	11, 92, 350, 396, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	114, 305
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	3, 442
LpnPI	CCDG	5 cut(s)	20, 47, 143, 183, 425
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	137, 410
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	5, 444
MboI	GATC	2 cut(s)	3, 442
MboII	GAAGA	8 cut(s)	42, 50, 137, 169, 227, 270, 389, 437
MluCI	AATT	6 cut(s)	103, 226, 258, 328, 447, 454
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	2 cut(s)	185, 407
MseI	TTAA	4 cut(s)	63, 78, 183, 315
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	3, 442
NlaIII	CATG	2 cut(s)	114, 305
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	10, 13
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	68
PspPPI	RGGWCCY	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	63, 78, 183, 315
SatI	GCNGC	2 cut(s)	9, 12
Sau3AI	GATC	2 cut(s)	3, 442
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	4 cut(s)	85, 142, 162, 276
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	6 cut(s)	103, 226, 258, 328, 447, 454
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	137, 410
StyD4I	CCNGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	85
TasI	AATT	6 cut(s)	103, 226, 258, 328, 447, 454
Tru1I	TTAA	4 cut(s)	63, 78, 183, 315
Tru9I	TTAA	4 cut(s)	63, 78, 183, 315
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	8, 11
Tsp45I	GTSAC	1 cut(s)	353
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	4 cut(s)	226, 258, 447, 454
XspI	CTAG	2 cut(s)	137, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.