FvH4_7g20850

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018874
Physical Location & Seq
Forward (+)
16853834 .. 16855692
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20850.t1

Sequence Viewer

Length: 654 bp
ATGTTGGAACTCAGACTTCAAGCATCGATCCTCAAGAAAATTGTGGTTTTCATCCACAATATGAATAATGGCCGCCACAACCATTGCTCGGCAACCGAGCTCGTCGATATCTTGAAAAGGACAACCGAGTATTTCGATTGCATCCCAACCGAGATCTTCCTCCAAGCCTTGGATCCCAGCAATAAATCTCTGGTGGACTTGCGGCTCAGACCTGACGCCTTCAAGCACTACCGCTGCGATCCGCCCATCTCCCTTGAAATCGTCCCTAAAAACATGGCCGACATCCTCGACTTCGCCGCAAACGAAAACGGACGTTGTCAAAGTGACACTAGTTTTTACTATGCCATGAAGCAAGAGAATAGAAGCAGGTGTAATTTTGGTGTGGATGACAAGGCTGAAGAAGGAGAAGAAGTAACAGTTATAGAAATGATCATGAAAGAGCCGGTTTCGGTGGAATATGAGCTGAACTACTTTGAGATGTTTACAGAAGTGAGCCCAGTGTCAGACATAGTTAAGATTAACTTGTGCGCGGAGTTTCCAGTTATGGTGGAGTACAAGATTGCAAAGAGGAGTTGGTTTAGGTTCTACTTGGCTCCTATACCCAAGGACGAGGACGGACCAACAGAGCCACGGAGGGCGTCCCCGGCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000710 GO:0000731 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006273 GO:0006275 GO:0006281 GO:0006289 GO:0006298 GO:0006301 GO:0006325 GO:0006342 GO:0006348 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019985 GO:0022402 GO:0022414 GO:0022616 GO:0030234 GO:0030337 GO:0030466 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032069 GO:0032070 GO:0032075 GO:0032077 GO:0032268 GO:0032270 GO:0032991 GO:0033260 GO:0033554 GO:0034085 GO:0034087 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0035753 GO:0035861 GO:0040029 GO:0042176 GO:0042276 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043570 GO:0043596 GO:0043626 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0044796 GO:0045732 GO:0045814 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051336 GO:0051338 GO:0051345 GO:0051347 GO:0051716 GO:0060255 GO:0061982 GO:0065007 GO:0065009 GO:0070013 GO:0070182 GO:0070914 GO:0070987 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:0090734 GO:0097159 GO:0098772 GO:0098813 GO:0104004 GO:0140014 GO:1900262 GO:1900264 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902296 GO:1902319 GO:1902392 GO:1902394 GO:1902679 GO:1902969 GO:1902983 GO:1903021 GO:1903022 GO:1903046 GO:1903047 GO:1903362 GO:1903364 GO:1903459 GO:1903460 GO:1903506 GO:1903507 GO:1905777 GO:1905779 GO:2000112 GO:2000113 GO:2000278 GO:2000573 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N

Protein Analysis

218

Amino Acids

25.13

Weight (kDa)

5.15

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCNA_N PF00705 43 - 103 4.8e-12 Proliferating cell nuclear antigen, N-terminal domain
PCNA_C PF02747 135 - 200 3.1e-12 Proliferating cell nuclear antigen, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20850
rosa_chinensis RchiOBHm_Chr1g0365091
rosa_laevigata RLG00000027445
rosa_multiflora Rmu_sc0008025.1_g000005 Rmu_ssc0000112.1_g000005
rosa_rugosa Rorug01G0319500
rosa_samantha Rh1BG289900 Rh1CG306600 Rh1DG321500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 169
AccII CGCG 1 cut(s) 530
AciI CCGC 6 cut(s) 73, 202, 232, 242, 297, 530
AclWI GGATC 4 cut(s) 22, 167, 180, 233
AcoI YGGCCR 3 cut(s) 70, 276, 645
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 2 cut(s) 216, 638
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 88, 169
AgsI TTSAA 4 cut(s) 20, 115, 223, 257
AhlI ACTAGT 1 cut(s) 329
AluBI AGCT 2 cut(s) 100, 463
AluI AGCT 2 cut(s) 100, 463
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 4 cut(s) 22, 167, 180, 233
AoxI GGCC 3 cut(s) 70, 276, 645
ApeKI GCWGC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 644
AvaII GGWCC 1 cut(s) 617
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 102, 497
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 254
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 644
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 357
BglII AGATCT 1 cut(s) 153
BisI GCNGC 4 cut(s) 73, 203, 235, 297
BlsI GCNGC 4 cut(s) 74, 204, 236, 298
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 174, 594
BmrFI CCNGG 1 cut(s) 644
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 32, 150
BmuI ACTGGG 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 644
Bsa29I ATCGAT 1 cut(s) 26
BsaHI GRCGYC 2 cut(s) 216, 638
BsaJI CCNNGG 4 cut(s) 168, 603, 629, 642
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 169
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 497, 539
Bse3DI GCAATG 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 4 cut(s) 168, 603, 629, 642
BseGI GGATG 4 cut(s) 51, 141, 282, 391
BseLI CCNNNNNNNGG 2 cut(s) 88, 169
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 25, 220
BseNI ACTGG 2 cut(s) 497, 539
BseRI GAGGAG 1 cut(s) 583
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 3 cut(s) 72, 278, 647
BshVI ATCGAT 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 443, 644
BslFI GGGAC 2 cut(s) 248, 625
BslI CCNNNNNNNGG 2 cut(s) 88, 169
BsmFI GGGAC 2 cut(s) 248, 625
BsnI GGCC 3 cut(s) 72, 278, 647
Bsp1286I GDGCHC 2 cut(s) 102, 497
Bsp143I GATC 5 cut(s) 27, 153, 172, 238, 429
BspACI CCGC 6 cut(s) 73, 202, 232, 242, 297, 530
BspANI GGCC 3 cut(s) 72, 278, 647
BspCNI CTCAG 2 cut(s) 24, 219
BspDI ATCGAT 1 cut(s) 26
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 174, 594
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 4 cut(s) 22, 167, 180, 233
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 497, 539
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 168, 603, 629, 642
BssMI GATC 5 cut(s) 27, 153, 172, 238, 429
BssNI GRCGYC 2 cut(s) 216, 638
BssT1I CCWWGG 2 cut(s) 168, 603
Bst4CI ACNGT 1 cut(s) 418
BstACI GRCGYC 2 cut(s) 216, 638
BstDEI CTNAG 2 cut(s) 11, 206
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 4 cut(s) 51, 141, 282, 391
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 5 cut(s) 30, 156, 175, 241, 432
BstMBI GATC 5 cut(s) 27, 153, 172, 238, 429
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 642
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 153, 172
BstYI RGATCY 2 cut(s) 153, 172
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 3 cut(s) 72, 278, 647
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 4 cut(s) 51, 141, 282, 391
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 26
CseI GACGC 2 cut(s) 224, 627
Csp6I GTAC 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 65, 100
CviAII CATG 3 cut(s) 274, 346, 433
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 2 cut(s) 11, 206
DpnI GATC 5 cut(s) 29, 155, 174, 240, 431
DpnII GATC 5 cut(s) 27, 153, 172, 238, 429
EaeI YGGCCR 3 cut(s) 70, 276, 645
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 168, 603
Eco24I GRGCYC 2 cut(s) 102, 497
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 617
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 100
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 168, 603
EcoT38I GRGCYC 2 cut(s) 102, 497
ErhI CCWWGG 2 cut(s) 168, 603
FaeI CATG 3 cut(s) 277, 349, 436
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 2 cut(s) 248, 625
FatI CATG 3 cut(s) 273, 345, 432
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 73, 203, 235, 297
FokI GGATG 4 cut(s) 38, 128, 269, 398
FriOI GRGCYC 2 cut(s) 102, 497
Fsp4HI GCNGC 4 cut(s) 73, 203, 235, 297
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 529
GluI GCNGC 4 cut(s) 73, 203, 235, 297
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 3 cut(s) 72, 278, 647
HapII CCGG 2 cut(s) 443, 644
HgaI GACGC 2 cut(s) 224, 627
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 2 cut(s) 216, 638
Hin1II CATG 3 cut(s) 277, 349, 436
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HpaII CCGG 2 cut(s) 443, 644
Hpy166II GTNNAC 2 cut(s) 196, 483
Hpy188I TCNGA 3 cut(s) 14, 209, 505
Hpy188III TCNNGA 3 cut(s) 34, 112, 433
Hpy8I GTNNAC 2 cut(s) 196, 483
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 229, 395
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 2 cut(s) 141, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 2 cut(s) 11, 206
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 2 cut(s) 216, 638
Hsp92II CATG 3 cut(s) 277, 349, 436
HspAI GCGC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 5 cut(s) 27, 153, 172, 238, 429
LmnI GCTCC 1 cut(s) 598
LpnPI CCDG 7 cut(s) 176, 190, 225, 352, 456, 510, 552
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 32, 150
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 323, 412
MalI GATC 5 cut(s) 29, 155, 174, 240, 431
MboI GATC 5 cut(s) 27, 153, 172, 238, 429
MboII GAAGA 3 cut(s) 148, 410, 419
MflI RGATCY 2 cut(s) 153, 172
MhlI GDGCHC 2 cut(s) 102, 497
MluCI AATT 2 cut(s) 39, 373
MnlI CCTC 6 cut(s) 41, 170, 296, 561, 604, 627
MseI TTAA 2 cut(s) 513, 519
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 2 cut(s) 443, 644
MspR9I CCNGG 1 cut(s) 644
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 644
NciI CCSGG 1 cut(s) 644
NdeII GATC 5 cut(s) 27, 153, 172, 238, 429
NlaIII CATG 3 cut(s) 277, 349, 436
NlaIV GGNNCC 2 cut(s) 174, 594
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 323
PagI TCATGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 315
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 4 cut(s) 74, 204, 236, 298
Psp124BI GAGCTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 174, 594
PspPI GGNCC 1 cut(s) 617
PsuI RGATCY 2 cut(s) 153, 172
PsyI GACNNNGTC 1 cut(s) 315
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 513, 519
SatI GCNGC 4 cut(s) 73, 203, 235, 297
Sau3AI GATC 5 cut(s) 27, 153, 172, 238, 429
Sau96I GGNCC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 2 cut(s) 102, 497
SetI ASST 6 cut(s) 102, 214, 316, 371, 465, 584
SfaNI GCATC 2 cut(s) 32, 150
SinI GGWCC 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 2 cut(s) 39, 373
SsiI CCGC 6 cut(s) 73, 202, 232, 242, 297, 530
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 2 cut(s) 168, 603
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 316
TaqI TCGA 4 cut(s) 26, 105, 135, 288
TasI AATT 2 cut(s) 39, 373
TatI WGTACW 1 cut(s) 552
TauI GCSGC 3 cut(s) 75, 205, 299
Tru1I TTAA 2 cut(s) 513, 519
Tru9I TTAA 2 cut(s) 513, 519
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 40, 77, 362, 449
TspGWI ACGGA 3 cut(s) 324, 630, 646
TspRI CASTG 1 cut(s) 504
Tth111I GACNNNGTC 1 cut(s) 315
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 617
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.