Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0018874

Physical Location & Seq

Genomic Coordinates Reverse (-)

29597 .. 31790

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgaaggtgaatggcgagcaattcatcgagacgatgaaggtgtatggaatcaactattgctcgcgaactgagctcgttggttgctggccaaccgagctcttcgattgctcgccaaccgagctctgcctccaatccttggatcccagctatttgtctctggtggccttgcggctcagacctgatgccttcaagcactaccaatgcgatcggcccatctctttgggaattgtcctcccaagcatggccaagatcctcaactttgcggcaaacgacgacgacgtcaccatcaggctgacgatggcgataatagtgaacaatagtattggctgtattgctagtgtggatgacaagcctgaagaagaagaagaagaagaagaagaagaagaagtaacagttatagaaatgaacgagccggtttcgatcgaatatcagttgagctgcttgaagccgtttacagaagctagcccgctgtcaaacacatttaggattaatttgtctcggcagctgccagttgtggttgactacaaaattgcaaagacgagttattttaggttctacttgactcctatagtcaaggacgaggacggacggctgtttgctggtgaggagggtatgacttacgagaaagacgaaaaaagaatggaggattttcgtcaacttgccattactgccaatcatgatgcaaagcctgaagaagaagaagcaatgtttatagagatgattgagccagtttcgaagacatatgatctgagctacttgttgtcccttacaaaagctagcccattgattgacaaagacagtaagcattaccttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000710 GO:0000731 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006273 GO:0006275 GO:0006281 GO:0006289 GO:0006298 GO:0006301 GO:0006325 GO:0006342 GO:0006348 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019985 GO:0022402 GO:0022414 GO:0022616 GO:0030234 GO:0030337 GO:0030466 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032069 GO:0032070 GO:0032075 GO:0032077 GO:0032268 GO:0032270 GO:0032991 GO:0033260 GO:0033554 GO:0034085 GO:0034087 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0035753 GO:0035861 GO:0040029 GO:0042176 GO:0042276 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043570 GO:0043596 GO:0043626 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0044796 GO:0045732 GO:0045814 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051336 GO:0051338 GO:0051345 GO:0051347 GO:0051716 GO:0060255 GO:0061982 GO:0065007 GO:0065009 GO:0070013 GO:0070182 GO:0070914 GO:0070987 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:0090734 GO:0097159 GO:0098772 GO:0098813 GO:0104004 GO:0140014 GO:1900262 GO:1900264 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902296 GO:1902319 GO:1902392 GO:1902394 GO:1902679 GO:1902969 GO:1902983 GO:1903021 GO:1903022 GO:1903046 GO:1903047 GO:1903362 GO:1903364 GO:1903459 GO:1903460 GO:1903506 GO:1903507 GO:1905777 GO:1905779 GO:2000112 GO:2000113 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166

Pfam Domains

Protein Families

PCNA_C PCNA_N

Protein Analysis

272

Amino Acids

31.11

Weight (kDa)

4.49

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018874)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20850
rosa_chinensis	RchiOBHm_Chr1g0365091
rosa_laevigata	RLG00000027445
rosa_multiflora	Rmu_sc0008025.1_g000005 Rmu_ssc0000112.1_g000005
rosa_rugosa	Rorug01G0319500
rosa_samantha	Rh1BG289900 Rh1CG306600 Rh1DG321500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	64
AciI	CCGC	3 cut(s)	169, 263, 467
AclWI	GGATC	3 cut(s)	134, 147, 244
AcoI	YGGCCR	2 cut(s)	86, 243
AcuI	CTGAAG	2 cut(s)	375, 711
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	136, 241
AgsI	TTSAA	2 cut(s)	190, 445
AluBI	AGCT	9 cut(s)	73, 97, 121, 147, 438, 461, 505, 753, 776
AluI	AGCT	9 cut(s)	73, 97, 121, 147, 438, 461, 505, 753, 776
Alw21I	GWGCWC	3 cut(s)	75, 99, 123
Alw26I	GTCTC	3 cut(s)	23, 159, 501
AlwI	GGATC	3 cut(s)	134, 147, 244
AoxI	GGCC	4 cut(s)	86, 162, 209, 243
ApeKI	GCWGC	3 cut(s)	438, 502, 505
AseI	ATTAAT	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	19, 274, 614
AsuII	TTCGAA	1 cut(s)	734
AsuNHI	GCTAGC	2 cut(s)	461, 776
BalI	TGGCCA	2 cut(s)	88, 245
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	3 cut(s)	75, 99, 123
BbsI	GAAGAC	1 cut(s)	743
Bbv12I	GWGCWC	3 cut(s)	75, 99, 123
BbvI	GCAGC	3 cut(s)	425, 492, 514
BccI	CCATC	3 cut(s)	221, 292, 293
BceAI	ACGGC	2 cut(s)	433, 605
BcoDI	GTCTC	3 cut(s)	23, 159, 501
BfaI	CTAG	3 cut(s)	336, 462, 777
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	5 cut(s)	170, 264, 439, 503, 506
BlsI	GCNGC	5 cut(s)	171, 265, 440, 504, 507
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	2 cut(s)	172, 670
BmtI	GCTAGC	2 cut(s)	465, 780
BpiI	GAAGAC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 241
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	509, 728
Bse3DI	GCAATG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	136, 241
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	3 cut(s)	60, 187, 740
BseNI	ACTGG	2 cut(s)	509, 728
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	425, 492, 514
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	208, 423
BshFI	GGCC	4 cut(s)	88, 164, 211, 245
BsiEI	CGRYCG	2 cut(s)	208, 423
BsiHKAI	GWGCWC	3 cut(s)	75, 99, 123
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	136, 241
BsmAI	GTCTC	3 cut(s)	23, 159, 501
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	88, 164, 211, 245
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	3 cut(s)	75, 99, 123
Bsp143I	GATC	5 cut(s)	139, 205, 249, 420, 745
Bsp68I	TCGCGA	1 cut(s)	64
BspACI	CCGC	3 cut(s)	169, 263, 467
BspANI	GGCC	4 cut(s)	88, 164, 211, 245
BspCNI	CTCAG	3 cut(s)	61, 186, 741
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	141
BspOI	GCTAGC	2 cut(s)	465, 780
BspPI	GGATC	3 cut(s)	134, 147, 244
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	509, 728
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	5 cut(s)	139, 205, 249, 420, 745
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	394, 800
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	7 cut(s)	17, 62, 86, 110, 463, 467, 778
BstDEI	CTNAG	3 cut(s)	69, 173, 749
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	5 cut(s)	142, 208, 252, 423, 748
BstMAI	GTCTC	3 cut(s)	23, 159, 501
BstMBI	GATC	5 cut(s)	139, 205, 249, 420, 745
BstMCI	CGRYCG	2 cut(s)	208, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 94, 118, 668
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	425, 492, 514
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	2 cut(s)	139, 249
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	2 cut(s)	139, 249
BsuRI	GGCC	4 cut(s)	88, 164, 211, 245
BtsCI	GGATG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	64
Cac8I	GCNNGC	7 cut(s)	17, 62, 86, 110, 463, 467, 778
CciI	TCATGA	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	2 cut(s)	241, 677
DdeI	CTNAG	3 cut(s)	69, 173, 749
DpnI	GATC	5 cut(s)	141, 207, 251, 422, 747
DpnII	GATC	5 cut(s)	139, 205, 249, 420, 745
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	86, 243
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	3 cut(s)	73, 97, 121
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	3 cut(s)	75, 99, 123
Eco53kI	GAGCTC	3 cut(s)	73, 97, 121
Eco57I	CTGAAG	2 cut(s)	375, 711
EcoICRI	GAGCTC	3 cut(s)	73, 97, 121
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	3 cut(s)	75, 99, 123
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	2 cut(s)	244, 680
FaiI	YATR	9 cut(s)	45, 242, 398, 569, 614, 678, 713, 742, 744
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	2 cut(s)	240, 676
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	5 cut(s)	170, 264, 439, 503, 506
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	3 cut(s)	75, 99, 123
Fsp4HI	GCNGC	5 cut(s)	170, 264, 439, 503, 506
FspBI	CTAG	3 cut(s)	336, 462, 777
GluI	GCNGC	5 cut(s)	170, 264, 439, 503, 506
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	4 cut(s)	88, 164, 211, 245
HapII	CCGG	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	244, 680
HincII	GTYRAC	2 cut(s)	520, 656
HindII	GTYRAC	2 cut(s)	520, 656
HinfI	GANTC	2 cut(s)	48, 562
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	3 cut(s)	19, 274, 614
Hpy166II	GTNNAC	4 cut(s)	313, 453, 520, 656
Hpy188I	TCNGA	2 cut(s)	176, 750
Hpy188III	TCNNGA	3 cut(s)	28, 63, 677
Hpy8I	GTNNAC	4 cut(s)	313, 453, 520, 656
Hpy99I	CGWCG	3 cut(s)	275, 278, 281
HpyAV	CCTTC	2 cut(s)	31, 196
HpyCH4III	ACNGT	2 cut(s)	394, 800
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	533, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 94, 118, 668
HpyF3I	CTNAG	3 cut(s)	69, 173, 749
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	244, 680
Kzo9I	GATC	5 cut(s)	139, 205, 249, 420, 745
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	425, 492, 514
LweI	GCATC	2 cut(s)	172, 670
MaeI	CTAG	3 cut(s)	336, 462, 777
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	280, 388
MalI	GATC	5 cut(s)	141, 207, 251, 422, 747
MboI	GATC	5 cut(s)	139, 205, 249, 420, 745
MflI	RGATCY	2 cut(s)	139, 249
MhlI	GDGCHC	3 cut(s)	75, 99, 123
MlsI	TGGCCA	2 cut(s)	88, 245
MluCI	AATT	4 cut(s)	20, 225, 490, 528
MluNI	TGGCCA	2 cut(s)	88, 245
MlyI	GAGTC	1 cut(s)	556
MnlI	CCTC	7 cut(s)	137, 242, 263, 574, 598, 601, 637
Mox20I	TGGCCA	2 cut(s)	88, 245
MscI	TGGCCA	2 cut(s)	88, 245
MseI	TTAA	1 cut(s)	489
Msp20I	TGGCCA	2 cut(s)	88, 245
MspA1I	CMGCKG	2 cut(s)	469, 505
MspI	CCGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	70, 94, 118, 668
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	5 cut(s)	139, 205, 249, 420, 745
NheI	GCTAGC	2 cut(s)	461, 776
NlaIII	CATG	2 cut(s)	244, 680
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	734
PagI	TCATGA	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 627
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	5 cut(s)	171, 265, 440, 504, 507
Ple19I	CGATCG	2 cut(s)	208, 423
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	3 cut(s)	75, 99, 123
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	139, 249
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	2 cut(s)	208, 423
PvuII	CAGCTG	1 cut(s)	505
RruI	TCGCGA	1 cut(s)	64
SacI	GAGCTC	3 cut(s)	75, 99, 123
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	5 cut(s)	170, 264, 439, 503, 506
Sau3AI	GATC	5 cut(s)	139, 205, 249, 420, 745
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	556
SduI	GDGCHC	3 cut(s)	75, 99, 123
SfaNI	GCATC	2 cut(s)	172, 670
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	734
Sse9I	AATT	4 cut(s)	20, 225, 490, 528
SsiI	CCGC	3 cut(s)	169, 263, 467
SspMI	CTAG	3 cut(s)	336, 462, 777
SstI	GAGCTC	3 cut(s)	75, 99, 123
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	394, 800
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	5 cut(s)	27, 102, 419, 423, 734
TasI	AATT	4 cut(s)	20, 225, 490, 528
TauI	GCSGC	2 cut(s)	172, 266
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	438, 502, 505
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	13, 17, 50, 419
TspGWI	ACGGA	1 cut(s)	600
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	489
XspI	CTAG	3 cut(s)	336, 462, 777
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.