Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

17695120 .. 17696348

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACGCTTTTTACAACCTTTACCGTTCACTAGGTGGCACCTGTGATTTTTCCGGTTCCGGGCAAATCATTAACACTGACCCAAGCACATTCTCATGCAAGTTTGTTGCTAGTGATGGGGATAGTGGAAGTAAACTTCCACCGCGTAATGTTTACAATCCTAAACCTATACCTAAAACGCCAAAACGTTCAGTACTAGGAGGAGATGGTCCGGTCCGCAAATGGTGCGTAGCAAAACCGCATTCTGATACTGATACTTTGGATAAACATTTAGACTGGTTATGCGGCATGGTAGAATGCCAAGCCATAAAACCAGGTGGTGCTTGCTATGACGAATCTATTAGGGCGCAAGCATCCTTCGCTATGAATTCTTATTATCAGACAAAGGGTCGTAACGACAATAATTGTGATTTCTCTGGAACTGCAGTCATCACCACTGTCGACCCAAGTCATGGTCCATGTCACTACCTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

159

Amino Acids

17.14

Weight (kDa)

7.55

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	74 - 142	9.4e-22	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	145
AciI	CCGC	4 cut(s)	143, 217, 239, 285
AclI	AACGTT	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	60, 452
AhdI	GACNNNNNGTC	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	209, 214, 455
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	3 cut(s)	209, 214, 455
BanI	GGYRCC	1 cut(s)	38
BccI	CCATC	2 cut(s)	110, 200
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	3 cut(s)	32, 111, 197
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	61, 315
Bme18I	GGWCC	3 cut(s)	209, 214, 455
BmeRI	GACNNNNNGTC	1 cut(s)	387
BmgT120I	GGNCC	3 cut(s)	209, 214, 455
BmiI	GGNNCC	2 cut(s)	40, 58
BmrFI	CCNGG	2 cut(s)	61, 315
BmsI	GCATC	1 cut(s)	362
BoxI	GACNNNNGTC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	53, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 452
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	60, 452
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	54, 60, 212
BslI	CCNNNNNNNGG	2 cut(s)	60, 452
BsmI	GAATGC	2 cut(s)	241, 302
BspACI	CCGC	4 cut(s)	143, 217, 239, 285
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	40, 58
BspMAI	CTGCAG	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	26, 439
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	325, 351
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 359
BstNI	CCWGG	1 cut(s)	315
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	59, 313
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	75, 435
Cac8I	GCNNGC	2 cut(s)	325, 351
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	209, 214, 455
CpoI	CGGWCCG	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	194
CspI	CGGWCCG	1 cut(s)	214
CviAII	CATG	4 cut(s)	96, 289, 452, 459
CviJI	RGCY	1 cut(s)	305
CviKI_1	RGCY	1 cut(s)	305
CviQI	GTAC	1 cut(s)	194
DraIII	CACNNNGTG	1 cut(s)	35
DriI	GACNNNNNGTC	1 cut(s)	387
Eam1105I	GACNNNNNGTC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	209, 214, 455
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	99, 292, 455, 462
FaiI	YATR	9 cut(s)	97, 170, 283, 290, 308, 330, 365, 453, 460
FatI	CATG	4 cut(s)	95, 288, 451, 458
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	3 cut(s)	32, 111, 197
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	286
HapII	CCGG	3 cut(s)	54, 60, 212
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	99, 292, 455, 462
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	3 cut(s)	54, 60, 212
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	4 cut(s)	29, 134, 154, 442
Hpy188I	TCNGA	2 cut(s)	247, 381
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	4 cut(s)	29, 134, 154, 442
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	26, 439
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	99, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 359
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	99, 292, 455, 462
HspAI	GCGC	1 cut(s)	347
LpnPI	CCDG	8 cut(s)	55, 67, 73, 225, 262, 300, 327, 402
LweI	GCATC	1 cut(s)	362
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	3 cut(s)	32, 111, 197
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	392, 461
MluCI	AATT	2 cut(s)	367, 403
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	94
MspI	CCGG	3 cut(s)	54, 60, 212
MspR9I	CCNGG	2 cut(s)	61, 315
Mva1269I	GAATGC	2 cut(s)	241, 302
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	225, 359
NciI	CCSGG	1 cut(s)	61
NlaIII	CATG	4 cut(s)	99, 292, 455, 462
NlaIV	GGNNCC	2 cut(s)	40, 58
NmuCI	GTSAC	1 cut(s)	461
PctI	GAATGC	2 cut(s)	241, 302
PfeI	GAWTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	287
PshAI	GACNNNNGTC	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	40, 58
PspPI	GGNCC	3 cut(s)	209, 214, 455
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	94
Rsr2I	CGGWCCG	1 cut(s)	214
RsrII	CGGWCCG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	286
Sau96I	GGNCC	3 cut(s)	209, 214, 455
ScaI	AGTACT	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	61, 315
SetI	ASST	8 cut(s)	21, 37, 44, 169, 175, 190, 319, 471
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	3 cut(s)	209, 214, 455
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	367, 403
SsiI	CCGC	4 cut(s)	143, 217, 239, 285
SspMI	CTAG	3 cut(s)	32, 111, 197
StyD4I	CCNGG	2 cut(s)	59, 313
TaaI	ACNGT	2 cut(s)	26, 439
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	367, 403
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	82, 442
TseFI	GTSAC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	17, 380
TspRI	CASTG	2 cut(s)	82, 442
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	3 cut(s)	209, 214, 455
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	32, 111, 197
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.