Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

59352855 .. 59355401

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTCACCAAGCTCATCATCTCACTTCTCCTCCTCCAACTCTCCACCACCGCTTTTTGCGATGCCGGCAGCCAAAATGTCGGCCCCATATTATTTTGTGTTGCAAGAGGAGGAACTAGCGACCAAAGTTTGTCAGCAAACATAGACTACGCTTGTAACCAGGCCAGCGTAAATTGTCAGCCTATACAACCAGGTGGTGCTTGTTTTACCAACGATCTCAAAACCCGGGCATCCTTCGCAATGAATGCGTACTACAACCTTTACCGCTCACTAGGTGGCACCTGCGATTTCTCTGGTTCCGGACAAGTCACAAACTTTGACCCAAGCAACGGCTCGTGCCAGTTTAGTAGTGGAAGTAAAGCTGTACCAATTAATACGCCGGATAGTTCTGCCACACCTATACCTAAAACACCGAAACCTTCACCAGGAGGAGACAATATTGGTCCAGGCCTCAAGTGGTGCATAGCAAAACCCCATGCTGATATTCAAGCTTTGCAGAAAAACTTAGACTGGTTGTGCGGCATGATAGAATGCCAAGCCATACAACCAGGTGGTGCTTGCTATGACGAATCTGTCAGGTCCCGAGCATCCTTTGCTATGAATTCTTACTATCAGAAAAAGGGTCGTAACGACTACAACTGTGATTTCTCTGGAACTGGACTCATCACCACTGTCGACCCAAGTCACGGTCAGTGTCGCTATCTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

236

Amino Acids

25.13

Weight (kDa)

7.91

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 101	2.2e-16	X8 domain
X8	PF07983	152 - 220	2.7e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	675
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	3 cut(s)	51, 265, 519
AcsI	RAATTY	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	251, 366
AfiI	CCNNNNNNNGG	3 cut(s)	329, 425, 686
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	5 cut(s)	159, 190, 424, 445, 547
AluBI	AGCT	3 cut(s)	13, 362, 491
AluI	AGCT	3 cut(s)	13, 362, 491
Alw26I	GTCTC	1 cut(s)	426
Ama87I	CYCGRG	2 cut(s)	225, 582
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	3 cut(s)	82, 162, 448
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	601
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	83, 443, 579
AsuC2I	CCSGG	2 cut(s)	226, 227
AsuHPI	GGTGA	2 cut(s)	414, 658
AvaI	CYCGRG	2 cut(s)	225, 582
AvaII	GGWCC	2 cut(s)	443, 579
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BcnI	CCSGG	2 cut(s)	226, 227
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	2 cut(s)	117, 272
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	70, 520
BlsI	GCNGC	2 cut(s)	71, 521
Bme1390I	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
Bme18I	GGWCC	2 cut(s)	443, 579
BmeT110I	CYCGRG	2 cut(s)	225, 582
BmgT120I	GGNCC	3 cut(s)	83, 443, 579
BmiI	GGNNCC	4 cut(s)	85, 280, 298, 581
BmrFI	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
BmsI	GCATC	3 cut(s)	52, 239, 596
BoxI	GACNNNNGTC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	226, 227
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 425, 686
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	340, 515, 661
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	230, 587
BseLI	CCNNNNNNNGG	3 cut(s)	329, 425, 686
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	340, 515, 661
BseRI	GAGGAG	4 cut(s)	20, 23, 123, 444
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	3 cut(s)	84, 164, 450
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	225, 582
BsiSI	CCGG	4 cut(s)	66, 226, 300, 380
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	329, 425, 686
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	2 cut(s)	250, 536
BsnI	GGCC	3 cut(s)	84, 164, 450
BsoBI	CYCGRG	2 cut(s)	225, 582
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	51, 265, 519
BspANI	GGCC	3 cut(s)	84, 164, 450
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	85, 280, 298, 581
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	340, 515, 661
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
Bst4CI	ACNGT	3 cut(s)	641, 673, 689
BstAPI	GCANNNNNTGC	2 cut(s)	245, 593
BstC8I	GCNNGC	3 cut(s)	67, 166, 559
BstDEI	CTNAG	1 cut(s)	505
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	230, 587
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 593
BstNI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BstPAI	GACNNNNGTC	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	7 cut(s)	159, 190, 224, 225, 424, 445, 547
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	84, 164, 450
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	230, 587
BtsIMutI	CAGTG	2 cut(s)	669, 698
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	67, 166, 559
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	83, 443, 579
Cfr9I	CCCGGG	1 cut(s)	225
CsiI	ACCWGGT	2 cut(s)	190, 547
Csp6I	GTAC	2 cut(s)	250, 365
CviAII	CATG	2 cut(s)	476, 523
CviQI	GTAC	2 cut(s)	250, 365
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	275
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eco147I	AGGCCT	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	443, 579
Eco88I	CYCGRG	2 cut(s)	225, 582
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	579
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	5 cut(s)	159, 190, 424, 445, 547
FaeI	CATG	2 cut(s)	479, 526
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	475, 522
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	70, 520
FokI	GGATG	2 cut(s)	217, 574
Fsp4HI	GCNGC	2 cut(s)	70, 520
FspBI	CTAG	2 cut(s)	117, 272
GluI	GCNGC	2 cut(s)	70, 520
HaeIII	GGCC	3 cut(s)	84, 164, 450
HapII	CCGG	4 cut(s)	66, 226, 300, 380
Hin1II	CATG	2 cut(s)	479, 526
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	569, 660
HpaII	CCGG	4 cut(s)	66, 226, 300, 380
HphI	GGTGA	2 cut(s)	414, 658
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	3 cut(s)	300, 582, 651
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	244, 429
HpyCH4III	ACNGT	3 cut(s)	641, 673, 689
HpyCH4V	TGCA	3 cut(s)	104, 462, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 593
HpyF3I	CTNAG	1 cut(s)	505
Hsp92II	CATG	2 cut(s)	479, 526
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	3 cut(s)	52, 239, 596
MabI	ACCWGGT	2 cut(s)	190, 547
MaeI	CTAG	2 cut(s)	117, 272
MaeIII	GTNAC	5 cut(s)	4, 155, 307, 626, 683
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	695
MluCI	AATT	3 cut(s)	172, 369, 601
MlyI	GAGTC	1 cut(s)	654
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	41, 44, 101, 104, 422, 461
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	1 cut(s)	372
MspI	CCGG	4 cut(s)	66, 226, 300, 380
MspR9I	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
Mva1269I	GAATGC	2 cut(s)	250, 536
MvaI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
MwoI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 593
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	226, 227
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	479, 526
NlaIV	GGNNCC	4 cut(s)	85, 280, 298, 581
NmuCI	GTSAC	3 cut(s)	4, 307, 683
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	2 cut(s)	250, 536
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	71, 521
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
PpuMI	RGGWCCY	1 cut(s)	579
PshAI	GACNNNNGTC	1 cut(s)	681
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	579
Psp6I	CCWGG	5 cut(s)	159, 190, 424, 445, 547
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	159, 190, 424, 445, 547
PspN4I	GGNNCC	4 cut(s)	85, 280, 298, 581
PspPI	GGNCC	3 cut(s)	83, 443, 579
PspPPI	RGGWCCY	1 cut(s)	579
RsaI	GTAC	2 cut(s)	251, 366
RsaNI	GTAC	2 cut(s)	250, 365
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	70, 520
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	83, 443, 579
SchI	GAGTC	1 cut(s)	654
ScrFI	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
SexAI	ACCWGGT	2 cut(s)	190, 547
SfaNI	GCATC	3 cut(s)	52, 239, 596
SinI	GGWCC	2 cut(s)	443, 579
SmaI	CCCGGG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	172, 369, 601
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	3 cut(s)	51, 265, 519
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	117, 272
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	7 cut(s)	159, 190, 224, 225, 424, 445, 547
TaaI	ACNGT	3 cut(s)	641, 673, 689
TaqI	TCGA	2 cut(s)	675, 706
TasI	AATT	3 cut(s)	172, 369, 601
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	676, 698
TseFI	GTSAC	3 cut(s)	4, 307, 683
TseI	GCWGC	1 cut(s)	69
Tsp45I	GTSAC	3 cut(s)	4, 307, 683
TspDTI	ATGAA	2 cut(s)	257, 614
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	2 cut(s)	676, 698
VpaK11BI	GGWCC	2 cut(s)	443, 579
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 453
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	2 cut(s)	117, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.