Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Forward (+)

10428597 .. 10429740

Gene Structure 1144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTCACCAAGCTCATCATCTCACTTCTCCTCCTCCAACTCTCCACCACCGCTTTTTGCGATGCCGGCGGCCAAAATGCCGGCCCCATATTATTTTGTGTTGCGAGAGGAGGAACTAGCGACCAAAGTTTGTCAGCAAACATAGACTACGCTTGTAACCAGGCCAGCGTAAATTGTCAGCCTATACAACCAGGTGGTGCTTGTTTTACCAACAATCTCAAAACCCGGGCATCCTTCGCAATGAATGCGTACTACAACCTTTACCGCTCACTAGGTGGCACCTGCGATTTCTCTGGTTCCGGACAAGTCATAAACTTTGACCCAAGCAACGGCTCGTGCCAGTTTGGTAGTGGAAGTAAAGCTGCACCAATTAATACGCCGGGTAGTTCTGCCACACCTACACCTATACCCAAAACACCGAAACCTTCTCCAGGAGGAGACAATGGTCCAGGCCTTAAGTGGTGCATAGCAAAACCACATGCTGATATTCAAGCTTTGCAGAAAAACTTAGACTGGTTGTGCGGCATGATAGAATGCCAAGCCATACAACCAGGTGGTGCTTGCTACGACGAATCTGTCAGGTCCCGAGCATCCTTTGCTATGAATTCTTACTATCAGACAAAGGGTCGTAACGACTACAACTGTGATTTCTCTGGAACTGGACTCATCACCACTGTCGACCCAAGTCACGGTCAGTGTCGCTATCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

238

Amino Acids

24.98

Weight (kDa)

7.91

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 101	1.6e-16	X8 domain
X8	PF07983	153 - 221	6e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	678
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	4 cut(s)	51, 69, 265, 522
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	604
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	491
AhdI	GACNNNNNGTC	1 cut(s)	624
AjnI	CCWGG	5 cut(s)	159, 190, 430, 448, 550
AluBI	AGCT	3 cut(s)	13, 362, 494
AluI	AGCT	3 cut(s)	13, 362, 494
Alw26I	GTCTC	1 cut(s)	432
Ama87I	CYCGRG	2 cut(s)	225, 585
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	4 cut(s)	70, 82, 162, 451
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	83, 446, 582
AsuC2I	CCSGG	3 cut(s)	226, 227, 381
AsuHPI	GGTGA	1 cut(s)	661
AvaI	CYCGRG	2 cut(s)	225, 585
AvaII	GGWCC	2 cut(s)	446, 582
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BcnI	CCSGG	3 cut(s)	226, 227, 381
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	117, 272
BfrI	CTTAAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	3 cut(s)	70, 363, 523
BlsI	GCNGC	3 cut(s)	71, 364, 524
Bme1390I	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
Bme18I	GGWCC	2 cut(s)	446, 582
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmeT110I	CYCGRG	2 cut(s)	225, 585
BmgT120I	GGNCC	3 cut(s)	83, 446, 582
BmiI	GGNNCC	4 cut(s)	85, 280, 298, 584
BmrFI	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
BmsI	GCATC	3 cut(s)	52, 239, 599
BoxI	GACNNNNGTC	2 cut(s)	444, 684
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	226, 227, 381
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 431, 689
Bse118I	RCCGGY	2 cut(s)	65, 80
Bse1I	ACTGG	3 cut(s)	340, 518, 664
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	230, 590
BseLI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	340, 518, 664
BseRI	GAGGAG	4 cut(s)	20, 23, 123, 450
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	4 cut(s)	72, 84, 164, 453
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	225, 585
BsiSI	CCGG	5 cut(s)	66, 81, 226, 300, 380
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	3 cut(s)	329, 431, 689
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	2 cut(s)	250, 539
BsnI	GGCC	4 cut(s)	72, 84, 164, 453
BsoBI	CYCGRG	2 cut(s)	225, 585
Bsp13I	TCCGGA	1 cut(s)	299
BspACI	CCGC	4 cut(s)	51, 69, 265, 522
BspANI	GGCC	4 cut(s)	72, 84, 164, 453
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	85, 280, 298, 584
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	65, 80
BsrI	ACTGG	3 cut(s)	340, 518, 664
BssAI	RCCGGY	2 cut(s)	65, 80
BssECI	CCNNGG	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
Bst4CI	ACNGT	3 cut(s)	644, 676, 692
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	2 cut(s)	245, 596
BstC8I	GCNNGC	4 cut(s)	67, 82, 166, 562
BstDEI	CTNAG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	230, 590
BstMAI	GTCTC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
BstNI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
BstNSI	RCATGY	1 cut(s)	482
BstPAI	GACNNNNGTC	2 cut(s)	444, 684
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	8 cut(s)	159, 190, 224, 225, 379, 430, 448, 550
BstV1I	GCAGC	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	72, 84, 164, 453
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	230, 590
BtsIMutI	CAGTG	2 cut(s)	672, 701
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	4 cut(s)	67, 82, 166, 562
Cfr10I	RCCGGY	2 cut(s)	65, 80
Cfr13I	GGNCC	3 cut(s)	83, 446, 582
Cfr9I	CCCGGG	1 cut(s)	225
CsiI	ACCWGGT	2 cut(s)	190, 550
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	479, 526
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	275
DrdI	GACNNNNNNGTC	1 cut(s)	575
DriI	GACNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	575
EaeI	YGGCCR	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	446, 582
Eco88I	CYCGRG	2 cut(s)	225, 585
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	5 cut(s)	159, 190, 430, 448, 550
FaeI	CATG	2 cut(s)	482, 529
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	2 cut(s)	478, 525
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	70, 363, 523
FokI	GGATG	2 cut(s)	217, 577
Fsp4HI	GCNGC	3 cut(s)	70, 363, 523
FspBI	CTAG	2 cut(s)	117, 272
GluI	GCNGC	3 cut(s)	70, 363, 523
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	72, 84, 164, 453
HapII	CCGG	5 cut(s)	66, 81, 226, 300, 380
Hin1II	CATG	2 cut(s)	482, 529
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	572, 663
HpaII	CCGG	5 cut(s)	66, 81, 226, 300, 380
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	618
Hpy188III	TCNNGA	3 cut(s)	300, 585, 654
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	2 cut(s)	244, 435
HpyCH4III	ACNGT	3 cut(s)	644, 676, 692
HpyCH4V	TGCA	3 cut(s)	365, 465, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
HpyF3I	CTNAG	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	482, 529
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	2 cut(s)	65, 80
KroNI	GCCGGC	2 cut(s)	67, 82
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	3 cut(s)	52, 239, 599
MabI	ACCWGGT	2 cut(s)	190, 550
MaeI	CTAG	2 cut(s)	117, 272
MaeIII	GTNAC	4 cut(s)	4, 155, 629, 686
MbiI	CCGCTC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	698
MluCI	AATT	3 cut(s)	172, 369, 604
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	41, 44, 101, 104, 428
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	65, 80
MseI	TTAA	2 cut(s)	372, 456
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	5 cut(s)	66, 81, 226, 300, 380
MspR9I	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
Mva1269I	GAATGC	2 cut(s)	250, 539
MvaI	CCWGG	5 cut(s)	161, 192, 432, 450, 552
MwoI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 596
NaeI	GCCGGC	2 cut(s)	67, 82
NciI	CCSGG	3 cut(s)	226, 227, 381
NgoMIV	GCCGGC	2 cut(s)	65, 80
NlaIII	CATG	2 cut(s)	482, 529
NlaIV	GGNNCC	4 cut(s)	85, 280, 298, 584
NmuCI	GTSAC	2 cut(s)	4, 686
NspI	RCATGY	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	453
PctI	GAATGC	2 cut(s)	250, 539
PdiI	GCCGGC	2 cut(s)	67, 82
PfeI	GAWTC	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	71, 364, 524
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	582
PshAI	GACNNNNGTC	2 cut(s)	444, 684
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	5 cut(s)	159, 190, 430, 448, 550
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	159, 190, 430, 448, 550
PspN4I	GGNNCC	4 cut(s)	85, 280, 298, 584
PspPI	GGNCC	3 cut(s)	83, 446, 582
PspPPI	RGGWCCY	1 cut(s)	582
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	372, 456
SatI	GCNGC	3 cut(s)	70, 363, 523
Sau96I	GGNCC	3 cut(s)	83, 446, 582
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	8 cut(s)	161, 192, 226, 227, 381, 432, 450, 552
SexAI	ACCWGGT	2 cut(s)	190, 550
SfaNI	GCATC	3 cut(s)	52, 239, 599
SinI	GGWCC	2 cut(s)	446, 582
SmaI	CCCGGG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	172, 369, 604
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	4 cut(s)	51, 69, 265, 522
SspMI	CTAG	2 cut(s)	117, 272
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	8 cut(s)	159, 190, 224, 225, 379, 430, 448, 550
TaaI	ACNGT	3 cut(s)	644, 676, 692
TaqI	TCGA	1 cut(s)	678
TasI	AATT	3 cut(s)	172, 369, 604
TauI	GCSGC	2 cut(s)	72, 525
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	372, 456
Tru9I	TTAA	2 cut(s)	372, 456
TscAI	CASTG	2 cut(s)	679, 701
TseFI	GTSAC	2 cut(s)	4, 686
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	4, 686
TspDTI	ATGAA	2 cut(s)	257, 617
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	2 cut(s)	679, 701
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	446, 582
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	429
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 456
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	2 cut(s)	117, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.