Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

45259221 .. 45270342

Gene Structure 11122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3105 bp

ATGGCTTCTTCGTCGTTGAGATCTTCGTCAACGACAACGGCAGCGGCCGCGGCGAACAATGGCGGAGTCGGAAGGTCCGAGAGGCAGCAACTCCATCCCGCTCGACAAACGACGTCGTCCGTTCGCTCTAAGCCTGCGTCTTCTTCAACTTCACGGCGCTCCGTCACTCCTACTTCCCGGATTCCGGCCTCCAATTCCGAGTTTCAGCAAGATGCTGGAAGAGTGAGGGTTGCTGTTAGAGTTCGGCCGAGAAATGATGAGGATCGAATTTCCGATTCGGATTACGGCGACAGTGTTGAGGTCCAGCCAGAGTTGAAGCGGTTAAAGTTGAGGAAAAACAATTGGATGTCTGACTCTTATAGATTTGATGAAATTTTTACTGAGACTGCCTCGCAAAACCGTGTTTACCAAGTGGTAGCAAAGCCTGTAGTTGAGAGTGTGTTAAACGGATATAATGGGACAGTCATGGCTTACGGTCAAACTGGTACTGGGAAGACTTACACACTTGGTAGGCTGGGTTGTGATGATGCATCGGAGCGTGGTATTATGGTTAGAGCTTTGGAGGACATTATTTTCAGTACCGCTCCAGAGTCTGATACTGTGGAAGTTTCATACTTGCAGCTGTACATGGAATCTATACAAGATTTACTTGCACCAGAAAAGACTAATATTCCCATTCACGAGGACCCTAAGACCGGTGAGGTGTCACTTCCTGGTGCTTCAGTAGTAAGAATCAAAGACCTTGATCATTTCTTACAACTTCTGCAAATTGGTGAGGCAAACCGGCATGCAGCTAACACAAATCTAAACACGGAATCTTCTCGTAGTCATGCCATTCTCATGGTTTTCATTCGTAGATCTGTGGAAGACAAATCTACAGATGAGATCATTTCTCAGGAGAAAGCCTCGAGAAACGGCTTACCTATAATTCGAAGAAGCAAGTTGCTCATTGTTGATCTTGCTGGATCCGAAAGAGTTGATAAATCTGGCAGTGAGGGCCACTTACTCGAGGAGGCTAAATTTATTAATCTTTCACTGACTTCCCTTGGGAAATGTATAAACGCATTGGCTGAAAACAGTCCACATATCCCAACCAGAGATTCCAAGCTTACAAGGTTGCTACGTGATTCATTTGGAGGTACAGCGAGGACATCACTTATAATAACGATTGGACCATCAGCACGACATTATGCAGAGACCAGTAGCACAGTAATGTTTGGACAACGGGCAATGAAAATAGTAAACACAGTAAAACTTAAAGAAGAATTTGATTATGAAAGTCAATGTCGGAAGCTTGAGAACCAAATAGACAATCTCACTGCAGAATTTGAACGGCAACTGAAGTTGAGGGACAGTAAAAAATATGAATTGGAAAGACAGCTGACAGAGTGTCAACACTCTTTTGCTGAGGCCGAAGAAAATCTGATCACAAGGTCTGAGTTTTTGGAGAAGGAAAATACTCGTTTAGGGTTGGAGATGAAAGATCTTTTATATGAATTGAACAGTCAGAAAGAACACCATGATATGATGCATGATAAGGTGGCACAGCTTGAATCGAGTTTGGAACAGGGCAAGCAACACCAGGTTGAAAGTTCTACATATCAGAAAATACTAGCTGATACCACTCAGATGTATGAAGAGAAAATAGCAAAGTTGATGAAGCAGCTAGAAGATGAGCATACTCGTTATGGAAGCACAGAGGATCAGTTAGATGCGATGAGGAAGCTTCTGACTGATGGCCAGAAGACTATTCAGCGACATGAGATGGAACATTCTACATATCAAAAAGCACTTGCTGACACAACTCAGATGTATGAGAGGAAAATAGCCGAGCTAATGGAGCAATTGGAAGATGAGCATTCCCGTTTTGAAGATTTAAAAGGACAAGTTAATTTGGCGAAGAAGCTACGTCATCAACAAAGTTCAATGAAGGGGAAGGAGAGCGATGAACTTAGAGTGAAGTTACAAGACATGAAGCAGCTGCACGAATCAACTCTAAACGAATTTCAGTCCTTGAAATCAGACTATTCTGATCTATCAGAAGAGAAGGCTAGACTAGATGAAGAACTTCAAGATGTGAAGCAAAGACTTCTATTGGAAGAGAAGAAGAAGAAAACTATAGAGAATGAGCTGGTCATGCTAAAGAAGGATGTACCAGAGAAAGAAGATGATTTTGTGGATAAGAAATCATATATGAAGGAAAATATATATAAAGGGTCTTCTGCTTTGGGGACTCCAATGGGTTTACACAATTCAAATCCATCAAGGGAGTTGCTATCTAGCCAGAGGGAGACACCTTCTAATCAGAGGGCTACAATTGCAAAAATATGTGAAGAAGTTGGGCTTCAAAAGATTGTACAACTGATGACATCTGATGATTTAGATGTCCAAACCCATGCTGTGAAGATGGTAGCCAATCTTGCAGCTGAAGATATGAATCAGGAAAAGATCATGGAGGAAGGTGGTCTAGATGCTTTGCTTATGCTGTTGCAATCCTCACAAAATACAACTATTCTTAGAGTGGCTTCTGGAGCAATTGCCAATTTGGCAATGAATGAGGTAAATCAAGGTTTAATTATGAGTAGAGGTGGAGCTCAGCTACTTGCAGGGACAGCATCGAAGACAAATGATCCACAAACTCTTAGAATGGTTGCTGGAGCACTTGCTAATTTATGTGGAAATGAAAGATTACACATGATGCTGAAAGAAGATGGAGGCATTAAGGCGCTCTTGGAAATGGCAAGGTCTGGGAGTAGTGACGTTATAGCGCAAGTTGCTAGAGGAATGGCTAATTTTGCAAAGTGTGAATCTCGCGGAACTATTCAAGGACATAGAAAAGGTCACTCCCTTTTGATCGAAGATGGTGCCCTTACTTGGTTGATTGGAAACTCCAATACTACCTCGTCTTCAACAAAACGCCATATTGAGCTTGCTCTCTGCCATTTAGCACAAAATGAGGACAATGCAAACGATTTCATATCCAGTGGAGGGCTGAAAGAGCTTGTACGAATATCGAATGAATCCAGTAGGGAAGATATCCGAAATTTAGCAAAGAAGACGTTGAGATTGAGTTCAAAATTTCAGACTGAGATCCGTGCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

1034

Amino Acids

115.88

Weight (kDa)

6.0

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	71 - 217	3.3e-18	Microtubule binding
Kinesin	PF00225	80 - 413	1.8e-97	Kinesin motor domain
ARM_ARMC5	PF24768	782 - 1015	1.6e-12	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
AatII	GACGTC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	2864
AccBSI	CCGCTC	2 cut(s)	101, 584
AccII	CGCG	2 cut(s)	50, 2814
AciI	CCGC	9 cut(s)	44, 48, 50, 63, 99, 319, 582, 2814, 3098
AclWI	GGATC	6 cut(s)	270, 960, 973, 1710, 2624, 3085
AcoI	YGGCCR	3 cut(s)	45, 245, 1738
AcsI	RAATTY	8 cut(s)	267, 372, 1019, 1265, 1325, 2003, 3043, 3077
AcuI	CTGAAG	3 cut(s)	705, 1361, 2448
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	7 cut(s)	487, 580, 626, 1141, 2154, 2358, 3006
AfiI	CCNNNNNNNGG	4 cut(s)	184, 695, 2874, 2988
AgeI	ACCGGT	1 cut(s)	695
AhdI	GACNNNNNGTC	1 cut(s)	1389
AjnI	CCWGG	2 cut(s)	712, 1581
AjuI	GAANNNNNNNTTGG	2 cut(s)	1084, 1116
Alw21I	GWGCWC	2 cut(s)	2596, 2662
Alw26I	GTCTC	3 cut(s)	377, 1190, 2285
AlwI	GGATC	6 cut(s)	270, 960, 973, 1710, 2624, 3085
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	2 cut(s)	907, 1007
AoxI	GGCC	6 cut(s)	45, 186, 245, 997, 1410, 1738
ApeKI	GCWGC	8 cut(s)	41, 85, 619, 791, 1663, 1978, 1981, 2423
ApoI	RAATTY	8 cut(s)	267, 372, 1019, 1265, 1325, 2003, 3043, 3077
AseI	ATTAAT	1 cut(s)	1026
AsiGI	ACCGGT	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	2067
AspLEI	GCGC	3 cut(s)	159, 2728, 2770
AspS9I	GGNCC	5 cut(s)	75, 301, 685, 997, 1172
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	710, 785
AsuII	TTCGAA	1 cut(s)	931
AvaI	CYCGRG	2 cut(s)	907, 1007
AvaII	GGWCC	4 cut(s)	75, 301, 685, 1172
BaeGI	GKGCMC	1 cut(s)	2869
BalI	TGGCCA	1 cut(s)	1740
BamHI	GGATCC	1 cut(s)	965
BanI	GGYRCC	1 cut(s)	2864
BanII	GRGCYC	1 cut(s)	2596
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	8 cut(s)	132, 500, 873, 1751, 2211, 2627, 2898, 3062
Bbv12I	GWGCWC	2 cut(s)	2596, 2662
BbvCI	CCTCAGC	1 cut(s)	1407
BbvI	GCAGC	8 cut(s)	53, 97, 631, 803, 1675, 1968, 1990, 2435
BccI	CCATC	8 cut(s)	102, 1183, 1730, 1759, 2269, 2401, 2705, 2855
BceAI	ACGGC	5 cut(s)	54, 170, 301, 931, 1349
BcgI	CGANNNNNNTGC	2 cut(s)	2846, 2880
BciT130I	CCWGG	2 cut(s)	714, 1583
BclI	TGATCA	2 cut(s)	745, 1425
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	377, 1190, 2285
BfaI	CTAG	7 cut(s)	1613, 1667, 2052, 2057, 2280, 2468, 2778
BfmI	CTRYAG	4 cut(s)	426, 876, 1320, 2118
BfoI	RGCGCY	2 cut(s)	160, 2729
BglI	GCCNNNNNGGC	1 cut(s)	2546
BglII	AGATCT	3 cut(s)	20, 857, 1483
BlpI	GCTNAGC	1 cut(s)	2595
Bme1390I	CCNGG	3 cut(s)	178, 714, 1583
Bme18I	GGWCC	4 cut(s)	75, 301, 685, 1172
BmeRI	GACNNNNNGTC	1 cut(s)	1389
BmeT110I	CYCGRG	2 cut(s)	907, 1007
BmgT120I	GGNCC	5 cut(s)	75, 301, 685, 997, 1172
BmiI	GGNNCC	3 cut(s)	687, 967, 2866
BmrFI	CCNGG	3 cut(s)	178, 714, 1583
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	8 cut(s)	202, 517, 539, 1518, 1702, 2461, 2624, 2688
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	8 cut(s)	132, 500, 873, 1751, 2211, 2627, 2898, 3062
BplI	GAGNNNNNCTC	4 cut(s)	374, 406, 890, 922
BpmI	CTGGAG	3 cut(s)	570, 2550, 2676
Bpu10I	CCTNAGC	1 cut(s)	1407
Bpu1102I	GCTNAGC	1 cut(s)	2595
Bpu14I	TTCGAA	1 cut(s)	931
BpuEI	CTTGAG	1 cut(s)	1316
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	1124
BsaBI	GATNNNNATC	2 cut(s)	261, 2436
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	1190
BsaJI	CCNNGG	2 cut(s)	48, 1045
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 695, 2874, 2988
Bse118I	RCCGGY	2 cut(s)	695, 783
Bse1I	ACTGG	5 cut(s)	487, 493, 1200, 2982, 3024
Bse3DI	GCAATG	2 cut(s)	1236, 2556
Bse8I	GATNNNNATC	2 cut(s)	261, 2436
BseBI	CCWGG	2 cut(s)	714, 1583
BseDI	CCNNGG	2 cut(s)	48, 1045
BseGI	GGATG	3 cut(s)	94, 351, 2155
BseJI	GATNNNNATC	2 cut(s)	261, 2436
BseLI	CCNNNNNNNGG	4 cut(s)	184, 695, 2874, 2988
BseMI	GCAATG	2 cut(s)	1236, 2556
BseMII	CTCAG	8 cut(s)	372, 908, 1398, 1428, 1640, 1820, 2609, 3078
BseNI	ACTGG	5 cut(s)	487, 493, 1200, 2982, 3024
BseRI	GAGGAG	1 cut(s)	1025
BseSI	GKGCMC	1 cut(s)	2869
BseX3I	CGGCCG	2 cut(s)	45, 245
BseXI	GCAGC	8 cut(s)	53, 97, 631, 803, 1675, 1968, 1990, 2435
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	1967
Bsh1236I	CGCG	2 cut(s)	50, 2814
Bsh1285I	CGRYCG	2 cut(s)	48, 248
BshFI	GGCC	6 cut(s)	47, 188, 247, 999, 1412, 1740
BshNI	GGYRCC	1 cut(s)	2864
BshTI	ACCGGT	1 cut(s)	695
BsiEI	CGRYCG	2 cut(s)	48, 248
BsiHKAI	GWGCWC	2 cut(s)	2596, 2662
BsiHKCI	CYCGRG	2 cut(s)	907, 1007
BsiSI	CCGG	4 cut(s)	178, 185, 696, 784
BslFI	GGGAC	4 cut(s)	472, 1364, 2245, 2623
BslI	CCNNNNNNNGG	4 cut(s)	184, 695, 2874, 2988
BsmAI	GTCTC	3 cut(s)	377, 1190, 2285
BsmFI	GGGAC	4 cut(s)	472, 1364, 2245, 2623
BsmI	GAATGC	1 cut(s)	1858
BsnI	GGCC	6 cut(s)	47, 188, 247, 999, 1412, 1740
Bso31I	GGTCTC	1 cut(s)	1190
BsoBI	CYCGRG	2 cut(s)	907, 1007
Bsp119I	TTCGAA	1 cut(s)	931
Bsp1286I	GDGCHC	3 cut(s)	2596, 2662, 2869
Bsp1407I	TGTACA	2 cut(s)	624, 2356
Bsp1720I	GCTNAGC	1 cut(s)	2595
BspACI	CCGC	9 cut(s)	44, 48, 50, 63, 99, 319, 582, 2814, 3098
BspANI	GGCC	6 cut(s)	47, 188, 247, 999, 1412, 1740
BspCNI	CTCAG	8 cut(s)	373, 907, 1399, 1429, 1639, 1819, 2608, 3079
BspFNI	CGCG	2 cut(s)	50, 2814
BspLI	GGNNCC	3 cut(s)	687, 967, 2866
BspMAI	CTGCAG	1 cut(s)	1324
BspPI	GGATC	6 cut(s)	270, 960, 973, 1710, 2624, 3085
BspT104I	TTCGAA	1 cut(s)	931
BspT107I	GGYRCC	1 cut(s)	2864
BspTNI	GGTCTC	1 cut(s)	1190
BsrBI	CCGCTC	2 cut(s)	101, 584
BsrDI	GCAATG	2 cut(s)	1236, 2556
BsrFI	RCCGGY	2 cut(s)	695, 783
BsrGI	TGTACA	2 cut(s)	624, 2356
BsrI	ACTGG	5 cut(s)	487, 493, 1200, 2982, 3024
BssAI	RCCGGY	2 cut(s)	695, 783
BssECI	CCNNGG	2 cut(s)	48, 1045
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	1 cut(s)	1045
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	714, 1583
Bst6I	CTCTTC	4 cut(s)	214, 1632, 2037, 2094
BstACI	GRCGYC	1 cut(s)	113
BstAUI	TGTACA	2 cut(s)	624, 2356
BstBAI	YACGTR	1 cut(s)	1124
BstBI	TTCGAA	1 cut(s)	931
BstC8I	GCNNGC	4 cut(s)	135, 789, 1574, 2931
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	94, 351, 2155
BstFNI	CGCG	2 cut(s)	50, 2814
BstH2I	RGCGCY	2 cut(s)	160, 2729
BstHHI	GCGC	3 cut(s)	159, 2728, 2770
BstMAI	GTCTC	3 cut(s)	377, 1190, 2285
BstMCI	CGRYCG	2 cut(s)	48, 248
BstNI	CCWGG	2 cut(s)	714, 1583
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	3 cut(s)	176, 712, 1581
BstSFI	CTRYAG	4 cut(s)	426, 876, 1320, 2118
BstSLI	GKGCMC	1 cut(s)	2869
BstUI	CGCG	2 cut(s)	50, 2814
BstV1I	GCAGC	8 cut(s)	53, 97, 631, 803, 1675, 1968, 1990, 2435
BstV2I	GAAGAC	8 cut(s)	132, 500, 873, 1751, 2211, 2627, 2898, 3062
BstX2I	RGATCY	5 cut(s)	20, 857, 965, 1483, 3090
BstXI	CCANNNNNNTGG	1 cut(s)	841
BstYI	RGATCY	5 cut(s)	20, 857, 965, 1483, 3090
BstZI	CGGCCG	2 cut(s)	45, 245
BsuRI	GGCC	6 cut(s)	47, 188, 247, 999, 1412, 1740
BtgI	CCRYGG	1 cut(s)	48
BtgZI	GCGATG	2 cut(s)	1730, 1959
BtsCI	GGATG	3 cut(s)	94, 351, 2155
BtsI	GCAGTG	2 cut(s)	997, 1317
BtsIMutI	CAGTG	5 cut(s)	298, 997, 1034, 1317, 2989
Cac8I	GCNNGC	4 cut(s)	135, 789, 1574, 2931
CaiI	CAGNNNCTG	1 cut(s)	593
CciNI	GCGGCCGC	1 cut(s)	45
CfoI	GCGC	3 cut(s)	159, 2728, 2770
Cfr10I	RCCGGY	2 cut(s)	695, 783
Cfr13I	GGNCC	5 cut(s)	75, 301, 685, 997, 1172
Cfr42I	CCGCGG	1 cut(s)	51
CseI	GACGC	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	1581
Csp6I	GTAC	7 cut(s)	486, 579, 625, 1140, 2153, 2357, 3005
CspAI	ACCGGT	1 cut(s)	695
CviQI	GTAC	7 cut(s)	486, 579, 625, 1140, 2153, 2357, 3005
DraI	TTTAAA	1 cut(s)	1878
DriI	GACNNNNNGTC	1 cut(s)	1389
EaeI	YGGCCR	3 cut(s)	45, 245, 1738
EagI	CGGCCG	2 cut(s)	45, 245
Eam1104I	CTCTTC	4 cut(s)	214, 1632, 2037, 2094
Eam1105I	GACNNNNNGTC	1 cut(s)	1389
EarI	CTCTTC	4 cut(s)	214, 1632, 2037, 2094
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	2594
EclXI	CGGCCG	2 cut(s)	45, 245
Eco130I	CCWWGG	1 cut(s)	1045
Eco24I	GRGCYC	1 cut(s)	2596
Eco31I	GGTCTC	1 cut(s)	1190
Eco32I	GATATC	1 cut(s)	3037
Eco47I	GGWCC	4 cut(s)	75, 301, 685, 1172
Eco52I	CGGCCG	2 cut(s)	45, 245
Eco53kI	GAGCTC	1 cut(s)	2594
Eco57I	CTGAAG	3 cut(s)	705, 1361, 2448
Eco88I	CYCGRG	2 cut(s)	907, 1007
EcoICRI	GAGCTC	1 cut(s)	2594
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	712, 1581
EcoRV	GATATC	1 cut(s)	3037
EcoT14I	CCWWGG	1 cut(s)	1045
EcoT22I	ATGCAT	2 cut(s)	532, 1533
EcoT38I	GRGCYC	1 cut(s)	2596
ErhI	CCWWGG	1 cut(s)	1045
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 2328, 2360, 2714, 2746
FaqI	GGGAC	4 cut(s)	472, 1364, 2245, 2623
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	2 cut(s)	745, 1425
FokI	GGATG	3 cut(s)	81, 358, 2162
FriOI	GRGCYC	1 cut(s)	2596
FspBI	CTAG	7 cut(s)	1613, 1667, 2052, 2057, 2280, 2468, 2778
GlaI	GCGC	3 cut(s)	158, 2727, 2769
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	3 cut(s)	570, 2550, 2676
HaeII	RGCGCY	2 cut(s)	160, 2729
HaeIII	GGCC	6 cut(s)	47, 188, 247, 999, 1412, 1740
HapII	CCGG	4 cut(s)	178, 185, 696, 784
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	3 cut(s)	159, 2728, 2770
Hin1I	GRCGYC	1 cut(s)	113
Hin6I	GCGC	3 cut(s)	157, 2726, 2768
HinP1I	GCGC	3 cut(s)	157, 2726, 2768
HincII	GTYRAC	2 cut(s)	30, 1394
HindII	GTYRAC	2 cut(s)	30, 1394
HindIII	AAGCTT	3 cut(s)	1106, 1292, 1724
HpaII	CCGG	4 cut(s)	178, 185, 696, 784
HphI	GGTGA	2 cut(s)	710, 785
Hpy166II	GTNNAC	6 cut(s)	30, 406, 1082, 1243, 1394, 2246
Hpy188III	TCNNGA	8 cut(s)	587, 680, 896, 909, 2072, 2441, 2468, 2529
Hpy8I	GTNNAC	6 cut(s)	30, 406, 1082, 1243, 1394, 2246
Hpy99I	CGWCG	3 cut(s)	16, 115, 118
HpyAV	CCTTC	9 cut(s)	66, 1444, 1924, 1930, 2041, 2140, 2191, 2307, 2453
HpyCH4IV	ACGT	5 cut(s)	113, 1123, 1909, 2760, 3059
HpySE526I	ACGT	5 cut(s)	113, 1123, 1909, 2760, 3059
Hsp92I	GRCGYC	1 cut(s)	113
HspAI	GCGC	3 cut(s)	157, 2726, 2768
Ksp22I	TGATCA	2 cut(s)	745, 1425
KspI	CCGCGG	1 cut(s)	51
LmnI	GCTCC	7 cut(s)	164, 535, 589, 1840, 2531, 2591, 2657
Lsp1109I	GCAGC	8 cut(s)	53, 97, 631, 803, 1675, 1968, 1990, 2435
LweI	GCATC	8 cut(s)	202, 517, 539, 1518, 1702, 2461, 2624, 2688
MabI	ACCWGGT	1 cut(s)	1581
MaeI	CTAG	7 cut(s)	1613, 1667, 2052, 2057, 2280, 2468, 2778
MaeII	ACGT	5 cut(s)	113, 1123, 1909, 2760, 3059
MaeIII	GTNAC	5 cut(s)	163, 705, 1962, 2756, 2840
MbiI	CCGCTC	2 cut(s)	101, 584
MfeI	CAATTG	4 cut(s)	340, 1844, 2316, 2535
MflI	RGATCY	5 cut(s)	20, 857, 965, 1483, 3090
MhlI	GDGCHC	3 cut(s)	2596, 2662, 2869
MlsI	TGGCCA	1 cut(s)	1740
MluNI	TGGCCA	1 cut(s)	1740
MlyI	GAGTC	4 cut(s)	75, 347, 599, 2227
MmeI	TCCRAC	3 cut(s)	49, 1268, 1452
Mox20I	TGGCCA	1 cut(s)	1740
Mph1103I	ATGCAT	2 cut(s)	532, 1533
MroXI	GAANNNNTTC	1 cut(s)	2067
MscI	TGGCCA	1 cut(s)	1740
MseI	TTAA	8 cut(s)	323, 443, 1026, 1257, 1877, 1890, 2573, 2721
MslI	CAYNNNNRTG	3 cut(s)	839, 1211, 1628
Msp20I	TGGCCA	1 cut(s)	1740
MspA1I	CMGCKG	6 cut(s)	44, 50, 622, 1381, 1981, 2426
MspI	CCGG	4 cut(s)	178, 185, 696, 784
MspR9I	CCNGG	3 cut(s)	178, 714, 1583
MunI	CAATTG	4 cut(s)	340, 1844, 2316, 2535
Mva1269I	GAATGC	1 cut(s)	1858
MvaI	CCWGG	2 cut(s)	714, 1583
MvnI	CGCG	2 cut(s)	50, 2814
NciI	CCSGG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	687, 967, 2866
NmeAIII	GCCGAG	2 cut(s)	273, 1855
NmuCI	GTSAC	4 cut(s)	163, 705, 2756, 2840
NotI	GCGGCCGC	1 cut(s)	45
NsiI	ATGCAT	2 cut(s)	532, 1533
NspI	RCATGY	1 cut(s)	791
NspV	TTCGAA	1 cut(s)	931
PaeI	GCATGC	1 cut(s)	791
PaeR7I	CTCGAG	2 cut(s)	907, 1007
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1858
PdmI	GAANNNNTTC	1 cut(s)	2067
PflFI	GACNNNGTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	695
PleI	GAGTC	4 cut(s)	74, 347, 598, 2227
PpsI	GAGTC	4 cut(s)	74, 347, 598, 2227
Ppu21I	YACGTR	1 cut(s)	1124
PpuMI	RGGWCCY	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	1026
PsiI	TTATAA	1 cut(s)	1160
Psp124BI	GAGCTC	1 cut(s)	2596
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	712, 1581
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	712, 1581
PspN4I	GGNNCC	3 cut(s)	687, 967, 2866
PspPI	GGNCC	5 cut(s)	75, 301, 685, 997, 1172
PspPPI	RGGWCCY	1 cut(s)	685
PspXI	VCTCGAGB	1 cut(s)	1007
PstI	CTGCAG	1 cut(s)	1324
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	5 cut(s)	20, 857, 965, 1483, 3090
PsyI	GACNNNGTC	1 cut(s)	115
PvuII	CAGCTG	4 cut(s)	622, 1381, 1981, 2426
RsaI	GTAC	7 cut(s)	487, 580, 626, 1141, 2154, 2358, 3006
RsaNI	GTAC	7 cut(s)	486, 579, 625, 1140, 2153, 2357, 3005
RseI	CAYNNNNRTG	3 cut(s)	839, 1211, 1628
SacI	GAGCTC	1 cut(s)	2596
SacII	CCGCGG	1 cut(s)	51
SaqAI	TTAA	8 cut(s)	323, 443, 1026, 1257, 1877, 1890, 2573, 2721
Sau96I	GGNCC	5 cut(s)	75, 301, 685, 997, 1172
SchI	GAGTC	4 cut(s)	75, 347, 599, 2227
ScrFI	CCNGG	3 cut(s)	178, 714, 1583
SduI	GDGCHC	3 cut(s)	2596, 2662, 2869
SexAI	ACCWGGT	1 cut(s)	1581
SfaNI	GCATC	8 cut(s)	202, 517, 539, 1518, 1702, 2461, 2624, 2688
SfcI	CTRYAG	4 cut(s)	426, 876, 1320, 2118
Sfr274I	CTCGAG	2 cut(s)	907, 1007
Sfr303I	CCGCGG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	931
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	4 cut(s)	75, 301, 685, 1172
SlaI	CTCGAG	2 cut(s)	907, 1007
SmiMI	CAYNNNNRTG	3 cut(s)	839, 1211, 1628
SmlI	CTYRAG	3 cut(s)	907, 1007, 1295
SmoI	CTYRAG	3 cut(s)	907, 1007, 1295
SphI	GCATGC	1 cut(s)	791
SsiI	CCGC	9 cut(s)	44, 48, 50, 63, 99, 319, 582, 2814, 3098
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	7 cut(s)	1613, 1667, 2052, 2057, 2280, 2468, 2778
SstI	GAGCTC	1 cut(s)	2596
StyD4I	CCNGG	3 cut(s)	176, 712, 1581
StyI	CCWWGG	1 cut(s)	1045
TaiI	ACGT	5 cut(s)	116, 1126, 1912, 2763, 3062
TaqI	TCGA	9 cut(s)	103, 265, 908, 931, 1008, 1556, 2618, 2856, 3014
TatI	WGTACW	2 cut(s)	624, 2356
TauI	GCSGC	3 cut(s)	47, 50, 53
Tru1I	TTAA	8 cut(s)	323, 443, 1026, 1257, 1877, 1890, 2573, 2721
Tru9I	TTAA	8 cut(s)	323, 443, 1026, 1257, 1877, 1890, 2573, 2721
TscAI	CASTG	5 cut(s)	298, 997, 1041, 1324, 2989
TseFI	GTSAC	4 cut(s)	163, 705, 2756, 2840
TseI	GCWGC	8 cut(s)	41, 85, 619, 791, 1663, 1978, 1981, 2423
Tsp45I	GTSAC	4 cut(s)	163, 705, 2756, 2840
TspGWI	ACGGA	5 cut(s)	109, 151, 462, 827, 3083
TspRI	CASTG	5 cut(s)	298, 997, 1041, 1324, 2989
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	4 cut(s)	75, 301, 685, 1172
VspI	ATTAAT	1 cut(s)	1026
XapI	RAATTY	8 cut(s)	267, 372, 1019, 1265, 1325, 2003, 3043, 3077
XbaI	TCTAGA	1 cut(s)	2467
XceI	RCATGY	1 cut(s)	791
XhoI	CTCGAG	2 cut(s)	907, 1007
XmnI	GAANNNNTTC	1 cut(s)	2067
XspI	CTAG	7 cut(s)	1613, 1667, 2052, 2057, 2280, 2468, 2778
ZraI	GACGTC	1 cut(s)	114
Zsp2I	ATGCAT	2 cut(s)	532, 1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.