Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

56017115 .. 56019663

Gene Structure 2549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG334300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTCACCAAGCTCATCATCTCACTTCTCCTCCTCCAACTCTCCACCACCGCTTTTTGCGATGCCGGCAGCCAAAATGTCGGCCCCATATTATTTTGTGTTGCAAGAGGAGGAACTAGCGACCAAAGTTTGTCAGCAAACATAGACTACGCTTGTAACCAGGCCAGCGTAAATTGTCAGCCTATACAACCAGGTGGTGCTTGTTTTACCAACGATCTCAAAACCCGGGCATCCTTCGCAATGAATGCGTACTACAACCTTTACCGCTCACTAGGTGGCACCTGCGATTTCTCTGGTTCCGGACAAGTCACAAACTTTGACCCAAGCAACGGCTCGTGCCAGTTTAGTAGTGGAAGTAAAGCTGTACCAATTAATACGCCGGATAGTTCTGCCACACCTATACCTAAAACACCGAAACCTTCACCAGGAGGAGACAATATTGGTCCAGGCCTCAAGTGGTGCATAGCAAAACCCCATGCTGATATTCAAGCTTTGCAGAAAAACTTAGACTGGTTGTGCGGCATGATAGAATGCCAAGCCATACAACCAGGTGGTGCTTGCTATGACGAATCTGTCAGGTCCCGAGCATCCTTTGCTATGAATTCTTACTATCAGAAAAAGGGTCGTAACGACTACAACTGTGATTTCTCTGGAACTGGACTCATCACCACTGTCGACCCAAGTACGCTAAAATGCCCACTCTCTTTCTTAATTTCCTTTTTCTCTCTGGTTGCTAAAATGGCGGGGTTTAATGTGATACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

254

Amino Acids

26.94

Weight (kDa)

7.9

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 101	2.5e-16	X8 domain
X8	PF07983	152 - 220	3.1e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	675
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	4 cut(s)	51, 265, 519, 743
AcsI	RAATTY	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	3 cut(s)	251, 366, 685
AfiI	CCNNNNNNNGG	2 cut(s)	329, 425
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	5 cut(s)	159, 190, 424, 445, 547
AluBI	AGCT	3 cut(s)	13, 362, 491
AluI	AGCT	3 cut(s)	13, 362, 491
Alw26I	GTCTC	1 cut(s)	426
Ama87I	CYCGRG	2 cut(s)	225, 582
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	3 cut(s)	82, 162, 448
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	601
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	83, 443, 579
AsuC2I	CCSGG	2 cut(s)	226, 227
AsuHPI	GGTGA	2 cut(s)	414, 658
AvaI	CYCGRG	2 cut(s)	225, 582
AvaII	GGWCC	2 cut(s)	443, 579
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BcnI	CCSGG	2 cut(s)	226, 227
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	2 cut(s)	117, 272
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	70, 520
BlsI	GCNGC	2 cut(s)	71, 521
Bme1390I	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
Bme18I	GGWCC	2 cut(s)	443, 579
BmeT110I	CYCGRG	2 cut(s)	225, 582
BmgT120I	GGNCC	3 cut(s)	83, 443, 579
BmiI	GGNNCC	4 cut(s)	85, 280, 298, 581
BmrFI	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
BmsI	GCATC	3 cut(s)	52, 239, 596
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	226, 227
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 425
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	340, 515, 661
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	230, 587
BseLI	CCNNNNNNNGG	2 cut(s)	329, 425
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	340, 515, 661
BseRI	GAGGAG	4 cut(s)	20, 23, 123, 444
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	3 cut(s)	84, 164, 450
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	225, 582
BsiSI	CCGG	4 cut(s)	66, 226, 300, 380
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	329, 425
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	2 cut(s)	250, 536
BsnI	GGCC	3 cut(s)	84, 164, 450
BsoBI	CYCGRG	2 cut(s)	225, 582
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	4 cut(s)	51, 265, 519, 743
BspANI	GGCC	3 cut(s)	84, 164, 450
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	85, 280, 298, 581
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	340, 515, 661
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
Bst4CI	ACNGT	2 cut(s)	641, 673
BstAPI	GCANNNNNTGC	2 cut(s)	245, 593
BstC8I	GCNNGC	3 cut(s)	67, 166, 559
BstDEI	CTNAG	1 cut(s)	505
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	230, 587
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 236, 245, 593, 740
BstNI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	7 cut(s)	159, 190, 224, 225, 424, 445, 547
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	84, 164, 450
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	230, 587
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	67, 166, 559
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	83, 443, 579
Cfr9I	CCCGGG	1 cut(s)	225
CsiI	ACCWGGT	2 cut(s)	190, 547
Csp6I	GTAC	3 cut(s)	250, 365, 684
CviAII	CATG	2 cut(s)	476, 523
CviQI	GTAC	3 cut(s)	250, 365, 684
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	275
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eco147I	AGGCCT	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	443, 579
Eco88I	CYCGRG	2 cut(s)	225, 582
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	579
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	5 cut(s)	159, 190, 424, 445, 547
FaeI	CATG	2 cut(s)	479, 526
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	475, 522
FauI	CCCGC	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	70, 520
FokI	GGATG	2 cut(s)	217, 574
Fsp4HI	GCNGC	2 cut(s)	70, 520
FspBI	CTAG	2 cut(s)	117, 272
GluI	GCNGC	2 cut(s)	70, 520
HaeIII	GGCC	3 cut(s)	84, 164, 450
HapII	CCGG	4 cut(s)	66, 226, 300, 380
Hin1II	CATG	2 cut(s)	479, 526
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	569, 660
HpaII	CCGG	4 cut(s)	66, 226, 300, 380
HphI	GGTGA	2 cut(s)	414, 658
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	3 cut(s)	300, 582, 651
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	244, 429
HpyCH4III	ACNGT	2 cut(s)	641, 673
HpyCH4V	TGCA	3 cut(s)	104, 462, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 236, 245, 593, 740
HpyF3I	CTNAG	1 cut(s)	505
Hsp92II	CATG	2 cut(s)	479, 526
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	3 cut(s)	52, 239, 596
MabI	ACCWGGT	2 cut(s)	190, 547
MaeI	CTAG	2 cut(s)	117, 272
MaeIII	GTNAC	4 cut(s)	4, 155, 307, 626
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	1 cut(s)	214
MluCI	AATT	4 cut(s)	172, 369, 601, 711
MlyI	GAGTC	1 cut(s)	654
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	41, 44, 101, 104, 422, 461
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	3 cut(s)	372, 710, 750
MspI	CCGG	4 cut(s)	66, 226, 300, 380
MspR9I	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
Mva1269I	GAATGC	2 cut(s)	250, 536
MvaI	CCWGG	5 cut(s)	161, 192, 426, 447, 549
MwoI	GCNNNNNNNGC	5 cut(s)	66, 236, 245, 593, 740
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	226, 227
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	479, 526
NlaIV	GGNNCC	4 cut(s)	85, 280, 298, 581
NmuCI	GTSAC	2 cut(s)	4, 307
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	450
PctI	GAATGC	2 cut(s)	250, 536
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	71, 521
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
PpuMI	RGGWCCY	1 cut(s)	579
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	579
Psp6I	CCWGG	5 cut(s)	159, 190, 424, 445, 547
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	159, 190, 424, 445, 547
PspN4I	GGNNCC	4 cut(s)	85, 280, 298, 581
PspPI	GGNCC	3 cut(s)	83, 443, 579
PspPPI	RGGWCCY	1 cut(s)	579
RsaI	GTAC	3 cut(s)	251, 366, 685
RsaNI	GTAC	3 cut(s)	250, 365, 684
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	3 cut(s)	372, 710, 750
SatI	GCNGC	2 cut(s)	70, 520
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	83, 443, 579
SchI	GAGTC	1 cut(s)	654
ScrFI	CCNGG	7 cut(s)	161, 192, 226, 227, 426, 447, 549
SexAI	ACCWGGT	2 cut(s)	190, 547
SfaNI	GCATC	3 cut(s)	52, 239, 596
SinI	GGWCC	2 cut(s)	443, 579
SmaI	CCCGGG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	172, 369, 601, 711
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	4 cut(s)	51, 265, 519, 743
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	117, 272
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	7 cut(s)	159, 190, 224, 225, 424, 445, 547
TaaI	ACNGT	2 cut(s)	641, 673
TaqI	TCGA	1 cut(s)	675
TasI	AATT	4 cut(s)	172, 369, 601, 711
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	372, 710, 750
Tru9I	TTAA	3 cut(s)	372, 710, 750
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	4, 307
TseI	GCWGC	1 cut(s)	69
Tsp45I	GTSAC	2 cut(s)	4, 307
TspDTI	ATGAA	2 cut(s)	257, 614
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	443, 579
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 453
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	2 cut(s)	117, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.