FvH4_7g23970

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017716
Physical Location & Seq
Forward (+)
18575028 .. 18575629
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23970.t1

Sequence Viewer

Length: 513 bp
ATGGCCTCCGAGGCTAGAAGTGAGAAATGGCGTGGATCAGTTGGCGGGATTGTTGAAGCTCCCATAGAAAAAGTCTGGTCCATGGTGTCACAAACCAAAAGACTAGCAGAATGGATGCCGATGGTTGAGCGCTGCACCGATTTAGCTGGAGAGGAAGGTGTTCCTGGTTATGTTCGACTAGTCTCCGGCTTCATGTTCCCCCAAGAAGATGGAGAAAGGTCATGGATCAAAGAGAAGCTGGTGTCCATAGATATACCACAGCATAGATATGTTTACAAATTGGAGGCAAGCAATGTAGGATTAGATGGGTCTGTCAATTCAGTTAAGCTTGTAGATTATGGGAATGATTCGACACTAGTCGATTGGTCATATGAGCTAGACCCCTTACAAGGCACATGTGAGGATAGCATTATAGACTATCTGGGATTTCTATACAAATCTTGTATTAACAGGATTGAGGGTGCTATAGAAGCATCCAGCAAAGTCTCAGTAGCAGGGTCACGGTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

171

Amino Acids

18.95

Weight (kDa)

4.75

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 18 - 131 2.5e-13 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017716)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23970
malus_domestica MD01G1146400.v1.1
pyrus_communis pycom01g16580
rosa_chinensis RchiOBHm_Chr1g0369311
rosa_laevigata RLG00000027138
rosa_roxburghii Rroxscaffold_4G00287740
rosa_rugosa Rorug01G0349500
rosa_samantha Rh1AG356700 Rh1BG320700 Rh1CG334700 Rh1DG351400
rosa_wichuraiana Rw1G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AclWI GGATC 2 cut(s) 43, 233
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 1 cut(s) 56
AhlI ACTAGT 2 cut(s) 178, 355
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 5 cut(s) 59, 146, 238, 328, 376
AluI AGCT 5 cut(s) 59, 146, 238, 328, 376
Alw26I GTCTC 2 cut(s) 187, 490
AlwI GGATC 2 cut(s) 43, 233
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 78
AvaII GGWCC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 119
BccI CCATC 3 cut(s) 115, 203, 299
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 187, 490
BcuI ACTAGT 2 cut(s) 178, 355
BfaI CTAG 6 cut(s) 15, 104, 179, 356, 377, 511
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 105, 482
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 9, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 9, 81
BseGI GGATG 2 cut(s) 120, 473
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 501
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 187, 490
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 35, 225
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 500
BspPI GGATC 2 cut(s) 43, 233
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 9, 81
BssMI GATC 2 cut(s) 35, 225
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 487
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 120, 473
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 38, 228
BstMAI GTCTC 2 cut(s) 187, 490
BstMBI GATC 2 cut(s) 35, 225
BstMWI GCNNNNNNNGC 2 cut(s) 11, 470
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 399
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 120, 473
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 78
CviAII CATG 4 cut(s) 82, 193, 222, 396
CviJI RGCY 8 cut(s) 5, 14, 59, 146, 189, 238, 328, 376
CviKI_1 RGCY 8 cut(s) 5, 14, 59, 146, 189, 238, 328, 376
DdeI CTNAG 1 cut(s) 487
DpnI GATC 2 cut(s) 37, 227
DpnII GATC 2 cut(s) 35, 225
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 85, 196, 225, 399
FatI CATG 4 cut(s) 81, 192, 221, 395
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 127, 460
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 6 cut(s) 15, 104, 179, 356, 377, 511
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 85, 196, 225, 399
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 347
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 470
HpyF3I CTNAG 1 cut(s) 487
Hsp92II CATG 4 cut(s) 85, 196, 225, 399
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 35, 225
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 105, 482
MaeI CTAG 6 cut(s) 15, 104, 179, 356, 377, 511
MaeIII GTNAC 2 cut(s) 87, 498
MalI GATC 2 cut(s) 37, 227
MboI GATC 2 cut(s) 35, 225
MboII GAAGA 1 cut(s) 218
MluCI AATT 2 cut(s) 278, 316
MnlI CCTC 6 cut(s) 4, 16, 145, 277, 394, 451
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 3 cut(s) 324, 447, 507
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 11, 470
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 370
NdeII GATC 2 cut(s) 35, 225
NlaIII CATG 4 cut(s) 85, 196, 225, 399
NmuCI GTSAC 2 cut(s) 87, 498
NspI RCATGY 1 cut(s) 399
PciI ACATGT 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 134
PscI ACATGT 1 cut(s) 395
PshAI GACNNNNGTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 324, 447, 507
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 35, 225
Sau96I GGNCC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 165
SetI ASST 7 cut(s) 61, 148, 160, 221, 240, 330, 378
SfaNI GCATC 2 cut(s) 105, 482
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 267
SpeI ACTAGT 2 cut(s) 178, 355
Sse9I AATT 2 cut(s) 278, 316
SsiI CCGC 1 cut(s) 45
SspMI CTAG 6 cut(s) 15, 104, 179, 356, 377, 511
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 175, 350, 360
TasI AATT 2 cut(s) 278, 316
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 324, 447, 507
Tru9I TTAA 3 cut(s) 324, 447, 507
TseFI GTSAC 2 cut(s) 87, 498
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 2 cut(s) 87, 498
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 78
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 6 cut(s) 15, 104, 179, 356, 377, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.