MD01G1146400.v1.1

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017716
Physical Location & Seq
Forward (+)
25596338 .. 25597029
692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1146400.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGCATCTGAGGCCAGAACTGCGAAATGGCGCGGATCAGTGGGGGGCATTGTTGAAGCTCCTATAGACAAAGTGTGGAGCATGGTTTCTCAAACCAAAAGACTAGCCGAATGGATGCCGATGGTTGAGCGCTGCACTGATCTAGCTGGAGAGGAAGGCGTTCCAGGATATGTTCGGTTAGTCTCGGGCTTCATGTTCCCTCAAGACGATGGAGACAGGTCATGGATCAAAGAGAAGTTGGTGTCCATGGACTCATCACAACATAGTTATGCGTACAAACTGGAAGCAAGCAACGTAGGGTTGGATGGGTCTGTAAATTCACTGAAGCTTGTAGATTATGGGGATGAGTCAACCCTAGTTGACTGGTCATTTGAGGTCAACCCCGTTGAAGGTGCACGTGAGGACAGCACTGTAGATTATCTAGGGTTTCTGTTTAAGTCTTGCATTAATAGGATTGAAGCTGCTTTAGAAGCAGCATCCAAGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

164

Amino Acids

18.03

Weight (kDa)

4.72

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 18 - 136 3.6e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017716)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23970
malus_domestica MD01G1146400.v1.1
pyrus_communis pycom01g16580
rosa_chinensis RchiOBHm_Chr1g0369311
rosa_laevigata RLG00000027138
rosa_roxburghii Rroxscaffold_4G00287740
rosa_rugosa Rorug01G0349500
rosa_samantha Rh1AG356700 Rh1BG320700 Rh1CG334700 Rh1DG351400
rosa_wichuraiana Rw1G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 43, 233
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 344
AcvI CACGTG 1 cut(s) 398
AfaI GTAC 1 cut(s) 275
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 56, 389, 458
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 4 cut(s) 59, 146, 328, 461
AluI AGCT 4 cut(s) 59, 146, 328, 461
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 187, 207
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 2 cut(s) 43, 233
Ama87I CYCGRG 1 cut(s) 184
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 12
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 132, 461, 473
ApoI RAATTY 1 cut(s) 316
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 33, 132
AvaI CYCGRG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 397
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 3 cut(s) 119, 448, 485
BccI CCATC 3 cut(s) 115, 203, 299
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 187, 207
BfaI CTAG 4 cut(s) 104, 143, 356, 422
BfmI CTRYAG 2 cut(s) 63, 411
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 3 cut(s) 133, 462, 474
BlsI GCNGC 3 cut(s) 134, 463, 475
Bme1390I CCNGG 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 14, 105, 485
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 285, 368
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 4 cut(s) 120, 310, 349, 476
BseLI CCNNNNNNNGG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 285, 368
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 119, 448, 485
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 187, 207
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 35, 139, 225
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 33
BspPI GGATC 2 cut(s) 43, 233
BsrI ACTGG 2 cut(s) 285, 368
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 35, 139, 225
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 4 cut(s) 120, 310, 349, 476
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 33, 132
BstKTI GATC 3 cut(s) 38, 142, 228
BstMAI GTCTC 2 cut(s) 187, 207
BstMBI GATC 3 cut(s) 35, 139, 225
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 470
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 2 cut(s) 63, 411
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 119, 448, 485
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 4 cut(s) 120, 310, 349, 476
BtsIMutI CAGTG 4 cut(s) 45, 135, 320, 408
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 33, 132
Csp6I GTAC 1 cut(s) 274
CviAII CATG 4 cut(s) 82, 193, 222, 247
CviJI RGCY 7 cut(s) 14, 59, 107, 146, 189, 328, 461
CviKI_1 RGCY 7 cut(s) 14, 59, 107, 146, 189, 328, 461
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 37, 141, 227
DpnII GATC 3 cut(s) 35, 139, 225
Eco130I CCWWGG 1 cut(s) 246
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 344
Eco72I CACGTG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 85, 196, 225, 250
FaiI YATR 9 cut(s) 65, 83, 171, 194, 223, 248, 264, 270, 339
FatI CATG 4 cut(s) 81, 192, 221, 246
Fnu4HI GCNGC 3 cut(s) 133, 462, 474
FokI GGATG 4 cut(s) 127, 317, 356, 463
Fsp4HI GCNGC 3 cut(s) 133, 462, 474
FspBI CTAG 4 cut(s) 104, 143, 356, 422
GlaI GCGC 2 cut(s) 32, 131
GluI GCNGC 3 cut(s) 133, 462, 474
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 14
HhaI GCGC 2 cut(s) 33, 132
Hin1II CATG 4 cut(s) 85, 196, 225, 250
Hin6I GCGC 2 cut(s) 31, 130
HinP1I GCGC 2 cut(s) 31, 130
HincII GTYRAC 3 cut(s) 351, 361, 379
HindII GTYRAC 3 cut(s) 351, 361, 379
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 2 cut(s) 251, 347
Hpy166II GTNNAC 4 cut(s) 351, 361, 379, 395
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 4 cut(s) 351, 361, 379, 395
HpyAV CCTTC 2 cut(s) 149, 383
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 294, 397
HpyCH4V TGCA 3 cut(s) 135, 395, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 470
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 2 cut(s) 294, 397
Hsp92II CATG 4 cut(s) 85, 196, 225, 250
HspAI GCGC 2 cut(s) 31, 130
Kzo9I GATC 3 cut(s) 35, 139, 225
LmnI GCTCC 2 cut(s) 64, 78
LpnPI CCDG 7 cut(s) 28, 132, 150, 177, 202, 266, 349
Lsp1109I GCAGC 3 cut(s) 119, 448, 485
LweI GCATC 3 cut(s) 14, 105, 485
MaeI CTAG 4 cut(s) 104, 143, 356, 422
MaeII ACGT 2 cut(s) 294, 397
MalI GATC 3 cut(s) 37, 141, 227
MboI GATC 3 cut(s) 35, 139, 225
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 316
MlyI GAGTC 2 cut(s) 245, 356
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 5 cut(s) 4, 145, 210, 367, 394
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 435, 447
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 470
NcoI CCATGG 1 cut(s) 246
NdeII GATC 3 cut(s) 35, 139, 225
NlaIII CATG 4 cut(s) 85, 196, 225, 250
PdmI GAANNNNTTC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 3 cut(s) 134, 463, 475
PleI GAGTC 2 cut(s) 245, 355
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 2 cut(s) 245, 355
Ppu21I YACGTR 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 163
PspCI CACGTG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 163
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 435, 447
SatI GCNGC 3 cut(s) 133, 462, 474
Sau3AI GATC 3 cut(s) 35, 139, 225
SchI GAGTC 2 cut(s) 245, 356
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 397
SetI ASST 9 cut(s) 61, 148, 221, 297, 330, 378, 394, 400, 463
SfaNI GCATC 3 cut(s) 14, 105, 485
SfcI CTRYAG 2 cut(s) 63, 411
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 316
SsiI CCGC 1 cut(s) 33
SspMI CTAG 4 cut(s) 104, 143, 356, 422
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 297, 400
TasI AATT 1 cut(s) 316
Tru1I TTAA 2 cut(s) 435, 447
Tru9I TTAA 2 cut(s) 435, 447
TscAI CASTG 4 cut(s) 45, 142, 327, 415
TseI GCWGC 3 cut(s) 132, 461, 473
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 4 cut(s) 45, 142, 327, 415
VneI GTGCAC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 4 cut(s) 104, 143, 356, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.