Rorug01G0349500

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017716
Physical Location & Seq
Forward (+)
46715887 .. 46719175
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0349500.1

Sequence Viewer

Length: 1083 bp
ATGGAGCAGGGGAGTTGGCCTGAGCCTAGAGCTTGGGGTGCTCGAGGATTTTGTTGTGGGTTGGAGGGTATGTTGTTTAACATTCAAGTGCTTTCCCCCTTCTCACTCTGGACTTCTATGTGCAGGGATTTGTCTAACAACTATTTATCAACAAGTCTTCCCCCATGTCTTAAAGCCCTTTTCTTTACACTTCTCCTCTCTCACTCTACTGCCGAGCCGGATTTCTTTCATTCGATCTCTTTTCTCTACTGCGGATCTGCCAAATTTATCGAGGAACTAGCCGCAATGGTGAAGAAGGAGTTTCAGAGTTTCGAAACTGGAAGGCTCAGATCTACAAAAGGCCCTAACTTCCAGGGCTCGATATCGCCAGACGCGCGAAGCGTCATTGTCCCCTTTACTTTTAGGCCCTTAAGTAGCTCTCTAACATACCGGATCTATCAATTTATGACTGTTCTGGGTTTTGTGTGGTGGGATTTTGTTAATTTTCGGGCTGGGGTGCATTATAATGTTGTGTTGGAGAAGATTGAGGTTGGAAGTGATGTTATAGAACTTCCTACTAGTGGTGGTGGTTGGTACAACATTTGCTTATTTACCACCAGAGTTGCAGGAACCAATAGTGAAGAAGGGGTTGATGTTAACTATGAAGAGATAATTGAAGCAACTTCAATTGGCTTTAGTTCAGTGATTTCCAAATTTGTTCGAATGTTGGATTTGGAGAAGGGAATGATGGACTACCTATATGCAAAGTGCACTCCTTGTATCATAGATTGTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGTGTTAAGAGTTTTCTTGGTCTGGAGTTGGGAAGTCAGTATAATGCTGGAAACCTTGACCCAACTTTTTTCATGGTTGCTAATTTGCAAGTAATAATGAAATCTGAAGATATGTGTTTGGAGTCCGCTAAGTTCTTCCCTGTGTTTGATAAGCCTACCAATTTTGCCACTGTTATCAGTGTGATTACAAAGAAAGAAGATGTAGATGAGATTGAGTTGATCGATTCATATGTTGTTCCATTCAAAGGTATCAGATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

360

Amino Acids

40.49

Weight (kDa)

5.06

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017716)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23970
malus_domestica MD01G1146400.v1.1
pyrus_communis pycom01g16580
rosa_chinensis RchiOBHm_Chr1g0369311
rosa_laevigata RLG00000027138
rosa_roxburghii Rroxscaffold_4G00287740
rosa_rugosa Rorug01G0349500
rosa_samantha Rh1AG356700 Rh1BG320700 Rh1CG334700 Rh1DG351400
rosa_wichuraiana Rw1G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccII CGCG 2 cut(s) 374, 376
AciI CCGC 3 cut(s) 252, 282, 945
AclWI GGATC 2 cut(s) 262, 440
AcsI RAATTY 2 cut(s) 263, 692
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 560, 1064
AflII CTTAAG 1 cut(s) 409
AgsI TTSAA 4 cut(s) 86, 656, 666, 1063
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 3 cut(s) 32, 417, 784
AluI AGCT 3 cut(s) 32, 417, 784
Alw21I GWGCWC 2 cut(s) 43, 752
Alw44I GTGCAC 1 cut(s) 748
AlwI GGATC 2 cut(s) 262, 440
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 3 cut(s) 17, 340, 404
ApaLI GTGCAC 1 cut(s) 748
ApoI RAATTY 2 cut(s) 263, 692
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 341, 405
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 2 cut(s) 312, 700
AvaI CYCGRG 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 752
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 43, 752
BccI CCATC 1 cut(s) 721
BciT130I CCWGG 1 cut(s) 353
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 27, 278, 558
BfrI CTTAAG 1 cut(s) 409
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 341, 405
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 863
Bpu10I CCTNAGC 1 cut(s) 21
Bpu14I TTCGAA 2 cut(s) 312, 700
BpuEI CTTGAG 1 cut(s) 806
Bsa29I ATCGAT 1 cut(s) 1041
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 560, 1064
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 1041
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 560, 1064
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 12, 340, 809
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 752
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 374, 376
BshFI GGCC 3 cut(s) 19, 342, 406
BshVI ATCGAT 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 43, 752
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 2 cut(s) 218, 430
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 560, 1064
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 3 cut(s) 19, 342, 406
BsoBI CYCGRG 1 cut(s) 42
Bsp119I TTCGAA 2 cut(s) 312, 700
Bsp1286I GDGCHC 3 cut(s) 43, 359, 752
Bsp143I GATC 5 cut(s) 234, 254, 329, 432, 1038
BspACI CCGC 3 cut(s) 252, 282, 945
BspANI GGCC 3 cut(s) 19, 342, 406
BspCNI CTCAG 3 cut(s) 13, 339, 810
BspDI ATCGAT 1 cut(s) 1041
BspFNI CGCG 2 cut(s) 374, 376
BspLI GGNNCC 1 cut(s) 610
BspPI GGATC 2 cut(s) 262, 440
BspT104I TTCGAA 2 cut(s) 312, 700
BspTI CTTAAG 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 5 cut(s) 234, 254, 329, 432, 1038
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 451, 991
Bst6I CTCTTC 1 cut(s) 639
BstAFI CTTAAG 1 cut(s) 409
BstBI TTCGAA 2 cut(s) 312, 700
BstDEI CTNAG 4 cut(s) 21, 326, 818, 948
BstFNI CGCG 2 cut(s) 374, 376
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 5 cut(s) 237, 257, 332, 435, 1041
BstMBI GATC 5 cut(s) 234, 254, 329, 432, 1038
BstMWI GCNNNNNNNGC 2 cut(s) 38, 373
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 752
BstUI CGCG 2 cut(s) 374, 376
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 3 cut(s) 254, 329, 432
BstYI RGATCY 3 cut(s) 254, 329, 432
Bsu15I ATCGAT 1 cut(s) 1041
BsuRI GGCC 3 cut(s) 19, 342, 406
BsuTUI ATCGAT 1 cut(s) 1041
BtsIMutI CAGTG 3 cut(s) 687, 987, 1003
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 341, 405
ClaI ATCGAT 1 cut(s) 1041
CseI GACGC 2 cut(s) 370, 380
Csp6I GTAC 1 cut(s) 574
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 2 cut(s) 165, 892
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 4 cut(s) 21, 326, 818, 948
DpnI GATC 5 cut(s) 236, 256, 331, 434, 1040
DpnII GATC 5 cut(s) 234, 254, 329, 432, 1038
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 42
EcoO109I RGGNCCY 2 cut(s) 341, 405
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 359
FaeI CATG 2 cut(s) 168, 895
FaqI GGGAC 1 cut(s) 374
FatI CATG 2 cut(s) 164, 891
FauNDI CATATG 1 cut(s) 1048
Fnu4HI GCNGC 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 3 cut(s) 27, 278, 558
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 3 cut(s) 19, 342, 406
HapII CCGG 2 cut(s) 218, 430
HgaI GACGC 2 cut(s) 370, 380
HhaI GCGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 168, 895
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 2 cut(s) 941, 1043
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 2 cut(s) 218, 430
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 637, 750
Hpy188I TCNGA 6 cut(s) 306, 329, 801, 819, 925, 1073
Hpy188III TCNNGA 2 cut(s) 109, 842
Hpy8I GTNNAC 2 cut(s) 637, 750
HpyAV CCTTC 5 cut(s) 109, 289, 315, 617, 712
HpyCH4III ACNGT 2 cut(s) 451, 991
HpyCH4V TGCA 6 cut(s) 123, 499, 605, 743, 750, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 373
HpyF3I CTNAG 4 cut(s) 21, 326, 818, 948
Hsp92II CATG 2 cut(s) 168, 895
HspAI GCGC 1 cut(s) 374
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 5 cut(s) 234, 254, 329, 432, 1038
LmnI GCTCC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 278, 558
MalI GATC 5 cut(s) 236, 256, 331, 434, 1040
MboI GATC 5 cut(s) 234, 254, 329, 432, 1038
MboII GAAGA 8 cut(s) 149, 304, 532, 632, 656, 938, 946, 1028
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 3 cut(s) 254, 329, 432
MhlI GDGCHC 3 cut(s) 43, 359, 752
MluCI AATT 8 cut(s) 263, 440, 481, 651, 666, 692, 901, 979
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 4 cut(s) 42, 495, 511, 687
MnlI CCTC 5 cut(s) 38, 58, 206, 265, 520
MseI TTAA 6 cut(s) 78, 171, 410, 480, 636, 825
MslI CAYNNNNRTG 2 cut(s) 86, 504
MspCI CTTAAG 1 cut(s) 409
MspI CCGG 2 cut(s) 218, 430
MspR9I CCNGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 2 cut(s) 374, 376
MwoI GCNNNNNNNGC 2 cut(s) 38, 373
NdeI CATATG 1 cut(s) 1048
NdeII GATC 5 cut(s) 234, 254, 329, 432, 1038
NlaIII CATG 2 cut(s) 168, 895
NlaIV GGNNCC 1 cut(s) 610
NmeAIII GCCGAG 1 cut(s) 238
NspV TTCGAA 2 cut(s) 312, 700
PaeR7I CTCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 1 cut(s) 1043
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 949
PsiI TTATAA 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 610
PspPI GGNCC 2 cut(s) 341, 405
PspXI VCTCGAGB 1 cut(s) 42
PsuI RGATCY 3 cut(s) 254, 329, 432
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 86, 504
SaqAI TTAA 6 cut(s) 78, 171, 410, 480, 636, 825
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 5 cut(s) 234, 254, 329, 432, 1038
Sau96I GGNCC 2 cut(s) 341, 405
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 3 cut(s) 43, 359, 752
SetI ASST 7 cut(s) 34, 419, 531, 738, 786, 876, 1069
Sfr274I CTCGAG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 312, 700
SlaI CTCGAG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 86, 504
SmlI CTYRAG 3 cut(s) 42, 409, 785
SmoI CTYRAG 3 cut(s) 42, 409, 785
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 8 cut(s) 263, 440, 481, 651, 666, 692, 901, 979
SsiI CCGC 3 cut(s) 252, 282, 945
SspMI CTAG 3 cut(s) 27, 278, 558
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 451, 991
TaqI TCGA 7 cut(s) 43, 233, 270, 312, 359, 700, 1041
TasI AATT 8 cut(s) 263, 440, 481, 651, 666, 692, 901, 979
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 1043
Tru1I TTAA 6 cut(s) 78, 171, 410, 480, 636, 825
Tru9I TTAA 6 cut(s) 78, 171, 410, 480, 636, 825
TscAI CASTG 3 cut(s) 687, 994, 1003
TspDTI ATGAA 5 cut(s) 218, 657, 880, 932, 1035
TspRI CASTG 3 cut(s) 687, 994, 1003
Vha464I CTTAAG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 748
XapI RAATTY 2 cut(s) 263, 692
XhoI CTCGAG 1 cut(s) 42
XspI CTAG 3 cut(s) 27, 278, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.