Rw1G031490

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017716
Physical Location & Seq
Forward (+)
59606905 .. 59607390
486 bp
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UTR
Exon/CDS
Intron
Rw1G031490.1

Sequence Viewer

Length: 486 bp
GCATCAGAGGCCAGAAGTGAGAAATGGCGCGGATCAGTTGGCGGAATTGTTGAAGCTCCCATAGAAAAAGTCTGGTGCATGGTGTCACAAACCAAAAGACTAGCAGAATGGATGCCAATGGTTGAGCGCTGCACTGATTTAGCCGGAGAGGAAGGTGTTCCTGGTTATGTTCGACTAGTCTCGGGATTCATGTTCCCCCAAGAAGATGGAGGAAGGTCATGGATCAAAGAGAAGCTGGTGTCCATAAATTCATCACAACATAGATATGTTTACAAATTGGAGGCAAGCAATGTAGGCTTAGATGGGTCTGTCAATTCAGTCAAGCTTGTAGATTATGGGAATGATTCGACACTAGTTGATTGGTCATATGAGCTAAACCCCTTACAAGGTATATGTGAGGATAGCATTATAGACTATCTGGGATTTCTATACAAATCTTGTATTAACAGGATTGAGGGTGCTATAGAAGCATCCAGCAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

161

Amino Acids

17.92

Weight (kDa)

4.89

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 17 - 130 9.2e-12 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017716)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23970
malus_domestica MD01G1146400.v1.1
pyrus_communis pycom01g16580
rosa_chinensis RchiOBHm_Chr1g0369311
rosa_laevigata RLG00000027138
rosa_roxburghii Rroxscaffold_4G00287740
rosa_rugosa Rorug01G0349500
rosa_samantha Rh1AG356700 Rh1BG320700 Rh1CG334700 Rh1DG351400
rosa_wichuraiana Rw1G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 2 cut(s) 30, 42
AclWI GGATC 2 cut(s) 40, 230
AcsI RAATTY 1 cut(s) 247
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 53
AhlI ACTAGT 2 cut(s) 175, 352
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 56, 235, 325, 373
AluI AGCT 4 cut(s) 56, 235, 325, 373
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 40, 230
Ama87I CYCGRG 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 30, 129
AvaI CYCGRG 1 cut(s) 181
BbvI GCAGC 1 cut(s) 116
BccI CCATC 2 cut(s) 200, 296
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 184
BcuI ACTAGT 2 cut(s) 175, 352
BfaI CTAG 3 cut(s) 101, 176, 353
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 11, 102, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 117, 470
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 181
Bsp143I GATC 2 cut(s) 32, 222
BspACI CCGC 2 cut(s) 30, 42
BspANI GGCC 1 cut(s) 11
BspFNI CGCG 1 cut(s) 30
BspPI GGATC 2 cut(s) 40, 230
BsrDI GCAATG 1 cut(s) 295
BssMI GATC 2 cut(s) 32, 222
Bst2UI CCWGG 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 117, 470
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 30, 129
BstKTI GATC 2 cut(s) 35, 225
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 32, 222
BstMWI GCNNNNNNNGC 3 cut(s) 8, 294, 467
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 117, 470
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 2 cut(s) 30, 129
CviAII CATG 3 cut(s) 79, 190, 219
CviJI RGCY 7 cut(s) 11, 56, 143, 235, 297, 325, 373
CviKI_1 RGCY 7 cut(s) 11, 56, 143, 235, 297, 325, 373
DdeI CTNAG 1 cut(s) 298
DpnI GATC 2 cut(s) 34, 224
DpnII GATC 2 cut(s) 32, 222
EciI GGCGGA 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 82, 193, 222
FatI CATG 3 cut(s) 78, 189, 218
FauNDI CATATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 2 cut(s) 124, 457
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 3 cut(s) 101, 176, 353
GlaI GCGC 2 cut(s) 29, 128
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 144
HhaI GCGC 2 cut(s) 30, 129
Hin1II CATG 3 cut(s) 82, 193, 222
Hin6I GCGC 2 cut(s) 28, 127
HinP1I GCGC 2 cut(s) 28, 127
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 2 cut(s) 186, 344
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 7, 485
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 146, 207
HpyCH4V TGCA 2 cut(s) 78, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 8, 294, 467
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 3 cut(s) 82, 193, 222
HspAI GCGC 2 cut(s) 28, 127
Kzo9I GATC 2 cut(s) 32, 222
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 8 cut(s) 25, 58, 147, 157, 174, 221, 404, 433
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 3 cut(s) 11, 102, 479
MaeI CTAG 3 cut(s) 101, 176, 353
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 34, 224
MboI GATC 2 cut(s) 32, 222
MboII GAAGA 1 cut(s) 215
MluCI AATT 4 cut(s) 45, 247, 275, 313
MnlI CCTC 5 cut(s) 142, 203, 274, 391, 448
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 8, 294, 467
NdeI CATATG 1 cut(s) 367
NdeII GATC 2 cut(s) 32, 222
NlaIII CATG 3 cut(s) 82, 193, 222
NmuCI GTSAC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 186, 344
PkrI GCNGC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 32, 222
ScrFI CCNGG 1 cut(s) 162
SetI ASST 8 cut(s) 58, 157, 218, 237, 327, 375, 391, 483
SfaNI GCATC 3 cut(s) 11, 102, 479
SfcI CTRYAG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 264
SpeI ACTAGT 2 cut(s) 175, 352
Sse9I AATT 4 cut(s) 45, 247, 275, 313
SsiI CCGC 2 cut(s) 30, 42
SspMI CTAG 3 cut(s) 101, 176, 353
StyD4I CCNGG 1 cut(s) 160
TaqI TCGA 2 cut(s) 172, 347
TasI AATT 4 cut(s) 45, 247, 275, 313
TfiI GAWTC 2 cut(s) 186, 344
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 178, 240
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 3 cut(s) 101, 176, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.