FvH4_7g26920

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015695
Physical Location & Seq
Forward (+)
20215311 .. 20216564
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26920.t1

Sequence Viewer

Length: 828 bp
ATGACAGAGCTAAACTATCTCGATGATCATTTTCATCTTCATCCAAACCTAATCATCGACCCTCTAACGGAACAGTGGGGAGACTTGCCCTTCAAGTTCGACGACTCAGAGGACATGCTCGTCTACAACTCCCTCTGGAACGCCTTCAGCTCCGATTGGTCCACCCCCTCCATGGAGGACGTCAAACCTGAGCCAGCAGCCTGTAACTACTTTGATGAGCTACATCAAATTTTGCAGCCTCAAGATGATCAAGTTTCCATTAACATGAGCGCACCAACTGAACTATCATCACCGGAAACTGAATCATCATCAACAGTCTCTCAGACGAGCTACGATCAGATACAAGAGGAAGTGCCTACCCCAAAGGTACAGAATAAGGCCGTAGTACTCGGCGGTGGTACGAGTAGCGTTTCGAGAGGAAGGCATTACAGAGGGGTGAGGCAGAGGCCGTGGGGCAAGTTCGCCGCTGAGATTAGAGACCCGAAGAAGAACGGAGCTCGAGTGTGGCTTGGAACCTATGAGACATCCGAGGAAGCGGCAGTGGCTTATGACCGAGCCGCTTATCGGATGCGAGGTGCCAAGGCTTTGCTCAATTTTCCACACCGGATTGGCCTGAATGAGCCGCCGCCTGTTAGGGTCACCGGCAAGCGTAAAGACCCTGAAGCCGGAAACAGTCCTACATCGACGACTACAAGAACGCCGAACTTGAATAAGAGGACCAAAGCTAGCTTGGCATCACCGGCGCCTGATATGGGAGGTGATGACCATGCCAGAGTAAATGTGCATCATACAAGACATAATAGTAATGCAGGTTTACTAGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 ko04626 map04075 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

276

Amino Acids

30.64

Weight (kDa)

5.8

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 142 - 192 2.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26920
malus_domestica MD01G1177000.v1.1
prunus_persica Prupe.2G272300_v2.0.a1 Prupe.3G108800_v2.0.a1
pyrus_communis pycom01g18770
rosa_chinensis RchiOBHm_Chr1g0373621
rosa_laevigata RLG00000026812
rosa_multiflora Rmu_co8453887.1_g000001 Rmu_sc0013090.1_g000004
rosa_roxburghii Rroxscaffold_4G00284110
rosa_rugosa Rorug01G0378500.1
rosa_samantha Rh1AG387900 Rh1BG352300 Rh1CG365100 Rh1DG382800
rosa_wichuraiana Rw1G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AatII GACGTC 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 800
AccB1I GGYRCC 2 cut(s) 575, 742
AccI GTMKAC 1 cut(s) 123
AciI CCGC 6 cut(s) 393, 465, 536, 558, 623, 626
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 2 cut(s) 130, 681
AcyI GRCGYC 2 cut(s) 180, 743
AfaI GTAC 3 cut(s) 369, 387, 400
AfiI CCNNNNNNNGG 5 cut(s) 67, 172, 564, 665, 752
AgsI TTSAA 2 cut(s) 94, 709
AhlI ACTAGT 1 cut(s) 817
AluBI AGCT 7 cut(s) 10, 150, 220, 330, 497, 725, 729
AluI AGCT 7 cut(s) 10, 150, 220, 330, 497, 725, 729
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 4 cut(s) 75, 322, 471, 515
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 3 cut(s) 378, 446, 610
ApeKI GCWGC 2 cut(s) 197, 235
ApoI RAATTY 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 2 cut(s) 272, 745
AspS9I GGNCC 2 cut(s) 159, 717
AsuHPI GGTGA 5 cut(s) 282, 448, 631, 729, 770
AsuNHI GCTAGC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 2 cut(s) 159, 717
BanI GGYRCC 2 cut(s) 575, 742
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 2 cut(s) 209, 247
BceAI ACGGC 2 cut(s) 365, 433
BclI TGATCA 2 cut(s) 25, 247
BcoDI GTCTC 4 cut(s) 75, 322, 471, 515
BcuI ACTAGT 1 cut(s) 817
BfaI CTAG 2 cut(s) 726, 818
BfoI RGCGCY 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 800
BisI GCNGC 7 cut(s) 198, 236, 465, 537, 558, 623, 626
BlsI GCNGC 7 cut(s) 199, 237, 466, 538, 559, 624, 627
BmcAI AGTACT 1 cut(s) 387
Bme18I GGWCC 2 cut(s) 159, 717
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 159, 717
BmiI GGNNCC 3 cut(s) 514, 577, 744
BmsI GCATC 3 cut(s) 558, 743, 793
BmtI GCTAGC 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 225
BsaHI GRCGYC 2 cut(s) 180, 743
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 4 cut(s) 171, 449, 528, 579
BsaWI WCCGGW 2 cut(s) 292, 603
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 172, 564, 665, 752
Bse118I RCCGGY 2 cut(s) 641, 739
BseDI CCNNGG 4 cut(s) 171, 449, 528, 579
BseGI GGATG 3 cut(s) 40, 524, 573
BseLI CCNNNNNNNGG 5 cut(s) 67, 172, 564, 665, 752
BseMII CTCAG 4 cut(s) 120, 180, 335, 459
BseXI GCAGC 2 cut(s) 209, 247
BshFI GGCC 3 cut(s) 380, 448, 612
BshNI GGYRCC 2 cut(s) 575, 742
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 293, 604, 642, 666, 740
BslI CCNNNNNNNGG 5 cut(s) 67, 172, 564, 665, 752
BsmAI GTCTC 4 cut(s) 75, 322, 471, 515
BsnI GGCC 3 cut(s) 380, 448, 612
Bso31I GGTCTC 1 cut(s) 471
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 25, 247, 334
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 6 cut(s) 393, 465, 536, 558, 623, 626
BspANI GGCC 3 cut(s) 380, 448, 612
BspCNI CTCAG 4 cut(s) 119, 181, 334, 460
BspLI GGNNCC 3 cut(s) 514, 577, 744
BspMI ACCTGC 1 cut(s) 800
BspOI GCTAGC 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 575, 742
BspTNI GGTCTC 1 cut(s) 471
BsrFI RCCGGY 2 cut(s) 641, 739
BssAI RCCGGY 2 cut(s) 641, 739
BssECI CCNNGG 4 cut(s) 171, 449, 528, 579
BssMI GATC 3 cut(s) 25, 247, 334
BssNI GRCGYC 2 cut(s) 180, 743
BssT1I CCWWGG 2 cut(s) 171, 579
Bst4CI ACNGT 3 cut(s) 75, 316, 674
BstACI GRCGYC 2 cut(s) 180, 743
BstC8I GCNNGC 3 cut(s) 195, 647, 727
BstDEI CTNAG 4 cut(s) 106, 189, 321, 468
BstDSI CCRYGG 2 cut(s) 171, 449
BstEII GGTNACC 1 cut(s) 637
BstF5I GGATG 3 cut(s) 40, 524, 573
BstH2I RGCGCY 1 cut(s) 746
BstHHI GCGC 2 cut(s) 272, 745
BstKTI GATC 3 cut(s) 28, 250, 337
BstMAI GTCTC 4 cut(s) 75, 322, 471, 515
BstMBI GATC 3 cut(s) 25, 247, 334
BstMWI GCNNNNNNNGC 3 cut(s) 542, 731, 740
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 209, 247
BsuRI GGCC 3 cut(s) 380, 448, 612
BtgI CCRYGG 2 cut(s) 171, 449
BtsCI GGATG 3 cut(s) 40, 524, 573
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 80, 546
BveI ACCTGC 1 cut(s) 800
Cac8I GCNNGC 3 cut(s) 195, 647, 727
CfoI GCGC 2 cut(s) 272, 745
Cfr10I RCCGGY 2 cut(s) 641, 739
Cfr13I GGNCC 2 cut(s) 159, 717
Csp6I GTAC 3 cut(s) 368, 386, 399
CviAII CATG 4 cut(s) 115, 172, 265, 767
CviQI GTAC 3 cut(s) 368, 386, 399
DdeI CTNAG 4 cut(s) 106, 189, 321, 468
DinI GGCGCC 1 cut(s) 744
DpnI GATC 3 cut(s) 27, 249, 336
DpnII GATC 3 cut(s) 25, 247, 334
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 171, 579
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 159, 717
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 2 cut(s) 130, 681
Eco88I CYCGRG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 171, 579
EcoT38I GRGCYC 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 744
EheI GGCGCC 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 171, 579
FaeI CATG 4 cut(s) 118, 175, 268, 770
FaiI YATR 9 cut(s) 116, 173, 266, 519, 549, 752, 768, 789, 798
FatI CATG 4 cut(s) 114, 171, 264, 766
FbaI TGATCA 2 cut(s) 25, 247
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 7 cut(s) 198, 236, 465, 537, 558, 623, 626
FokI GGATG 3 cut(s) 27, 511, 580
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 7 cut(s) 198, 236, 465, 537, 558, 623, 626
FspBI CTAG 2 cut(s) 726, 818
GlaI GCGC 2 cut(s) 271, 744
GluI GCNGC 7 cut(s) 198, 236, 465, 537, 558, 623, 626
HaeII RGCGCY 1 cut(s) 746
HaeIII GGCC 3 cut(s) 380, 448, 612
HapII CCGG 5 cut(s) 293, 604, 642, 666, 740
HhaI GCGC 2 cut(s) 272, 745
Hin1I GRCGYC 2 cut(s) 180, 743
Hin1II CATG 4 cut(s) 118, 175, 268, 770
Hin6I GCGC 2 cut(s) 270, 743
HinP1I GCGC 2 cut(s) 270, 743
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HinfI GANTC 2 cut(s) 104, 302
HpaII CCGG 5 cut(s) 293, 604, 642, 666, 740
HphI GGTGA 5 cut(s) 282, 448, 631, 729, 770
Hpy166II GTNNAC 4 cut(s) 124, 162, 815, 823
Hpy188I TCNGA 6 cut(s) 109, 154, 324, 339, 529, 567
Hpy188III TCNNGA 4 cut(s) 20, 136, 242, 414
Hpy8I GTNNAC 4 cut(s) 124, 162, 815, 823
Hpy99I CGWCG 2 cut(s) 104, 688
HpyAV CCTTC 3 cut(s) 100, 154, 414
HpyCH4III ACNGT 3 cut(s) 75, 316, 674
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 235, 784, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 731, 740
HpyF3I CTNAG 4 cut(s) 106, 189, 321, 468
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 180, 743
Hsp92II CATG 4 cut(s) 118, 175, 268, 770
HspAI GCGC 2 cut(s) 270, 743
KasI GGCGCC 1 cut(s) 742
Ksp22I TGATCA 2 cut(s) 25, 247
Kzo9I GATC 3 cut(s) 25, 247, 334
LmnI GCTCC 2 cut(s) 155, 494
Lsp1109I GCAGC 2 cut(s) 209, 247
LweI GCATC 3 cut(s) 558, 743, 793
MaeI CTAG 2 cut(s) 726, 818
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 203, 637
MalI GATC 3 cut(s) 27, 249, 336
MboI GATC 3 cut(s) 25, 247, 334
MboII GAAGA 3 cut(s) 29, 496, 499
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 228, 592
Mly113I GGCGCC 1 cut(s) 743
MlyI GAGTC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 5 cut(s) 293, 604, 642, 666, 740
MwoI GCNNNNNNNGC 3 cut(s) 542, 731, 740
NarI GGCGCC 1 cut(s) 743
NcoI CCATGG 1 cut(s) 171
NdeII GATC 3 cut(s) 25, 247, 334
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 4 cut(s) 118, 175, 268, 770
NlaIV GGNNCC 3 cut(s) 514, 577, 744
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 637
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 7 cut(s) 199, 237, 466, 538, 559, 624, 627
PleI GAGTC 1 cut(s) 98
PluTI GGCGCC 1 cut(s) 746
PpsI GAGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 514, 577, 744
PspPI GGNCC 2 cut(s) 159, 717
PspXI VCTCGAGB 1 cut(s) 498
RsaI GTAC 3 cut(s) 369, 387, 400
RsaNI GTAC 3 cut(s) 368, 386, 399
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 7 cut(s) 198, 236, 465, 537, 558, 623, 626
Sau3AI GATC 3 cut(s) 25, 247, 334
Sau96I GGNCC 2 cut(s) 159, 717
ScaI AGTACT 1 cut(s) 387
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 3 cut(s) 558, 743, 793
SfoI GGCGCC 1 cut(s) 744
Sfr274I CTCGAG 1 cut(s) 498
SgrAI CRCCGGYG 1 cut(s) 739
SinI GGWCC 2 cut(s) 159, 717
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 240, 498
SmoI CTYRAG 2 cut(s) 240, 498
SpeI ACTAGT 1 cut(s) 817
Sse9I AATT 2 cut(s) 228, 592
SsiI CCGC 6 cut(s) 393, 465, 536, 558, 623, 626
SspDI GGCGCC 1 cut(s) 742
SspMI CTAG 2 cut(s) 726, 818
SstI GAGCTC 1 cut(s) 499
StyI CCWWGG 2 cut(s) 171, 579
TaaI ACNGT 3 cut(s) 75, 316, 674
TaiI ACGT 1 cut(s) 183
TaqI TCGA 6 cut(s) 21, 57, 99, 413, 499, 683
TaqII GACCGA 1 cut(s) 567
TasI AATT 2 cut(s) 228, 592
TatI WGTACW 1 cut(s) 385
TauI GCSGC 5 cut(s) 467, 539, 560, 625, 628
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 80, 546
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 197, 235
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 23, 29
TspGWI ACGGA 2 cut(s) 83, 507
TspRI CASTG 2 cut(s) 80, 546
VpaK11BI GGWCC 2 cut(s) 159, 717
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 727
XhoI CTCGAG 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 2 cut(s) 726, 818
ZraI GACGTC 1 cut(s) 181
ZrmI AGTACT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.