RchiOBHm_Chr1g0373621

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015695
Physical Location & Seq
Forward (+)
61755217 .. 61756318
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59748

Sequence Viewer

Length: 861 bp
ATGACAGAGCTAAATGGTCTTCACGATCATTTTCTTCCTCATCCAAACTTAATCATCGACCCTCTAACAGAACAGTGGGGAGACTTGCCCTTCATGTTCGACGATTTCGATGACATGCTCGTCTACGACTCCCTCTGGACCTCCTTCAGCTCCGATTTGTCCACCCCCTCCATGGAGGACTTAACCACCGCCGTCAAGCCCGAGCCGGCCTATAACTACTTCGATGAACTACATCAAATTTTGCAGCCTCAAGAGTCATCGATTCTACATGATCAAGTTTCCATCAACATCAGCGCCCCAAATGAACTATCATCACCGGAAACTGAATCAACAGTCTCTCAGACGAGCTATGATCAGCTACAAGAGGAAGTCCCTACCCCAAAAGTACAGAAGGTACTTGGCGGCGGTACGAGTAGCGTTTCAAGAGGGAGGCATTACAGAGGGGTGAGACAGCGGCCGTGGGGAAAGTTCGCCGCCGAGATTCGAGATCCAGCGAAGAACGGGGCTCGAGTGTGGCTTGGCACCTATGAGACCTCCGAGGAAGCGGCTGTGGCTTATGACCGAGCCGCTTACCGGATGCGTGGTGCCAAGGCTTTGCTCAATTTTCCACACCGAATTGGCCTGAATGAACCGCCACCGGTTAGGGTCACCGGCAAGCGTAAAGACCCTGATCAACAAGCCGGAAACAGTCCCACATCGACGACTACAAGAACGCCGAACTTGAATAAGAGAACCAAAGCCAGCTTGGCGTCGCCGGCGCCTGATATGGGAGCTGATGCTAAGTTTGAAAGAGATGATCGTACCAGAGTAAATGTCAATCGTACAAGACATAATAGTAATGTGGGTTTACTAGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 ko04626 map04075 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

286

Amino Acids

31.97

Weight (kDa)

5.64

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 145 - 195 6.5e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26920
malus_domestica MD01G1177000.v1.1
prunus_persica Prupe.2G272300_v2.0.a1 Prupe.3G108800_v2.0.a1
pyrus_communis pycom01g18770
rosa_chinensis RchiOBHm_Chr1g0373621
rosa_laevigata RLG00000026812
rosa_multiflora Rmu_co8453887.1_g000001 Rmu_sc0013090.1_g000004
rosa_roxburghii Rroxscaffold_4G00284110
rosa_rugosa Rorug01G0378500.1
rosa_samantha Rh1AG387900 Rh1BG352300 Rh1CG365100 Rh1DG382800
rosa_wichuraiana Rw1G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccB1I GGYRCC 3 cut(s) 521, 584, 757
AccI GTMKAC 1 cut(s) 123
AciI CCGC 8 cut(s) 189, 402, 405, 454, 474, 545, 567, 632
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 455
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 130
AcyI GRCGYC 2 cut(s) 749, 758
AfaI GTAC 5 cut(s) 387, 396, 409, 802, 823
AfiI CCNNNNNNNGG 3 cut(s) 172, 573, 767
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 3 cut(s) 423, 724, 788
AhlI ACTAGT 1 cut(s) 850
AluBI AGCT 6 cut(s) 10, 150, 348, 358, 744, 773
AluI AGCT 6 cut(s) 10, 150, 348, 358, 744, 773
Alw26I GTCTC 4 cut(s) 75, 340, 442, 524
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 200, 507
AoxI GGCC 3 cut(s) 207, 455, 619
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 637
AspLEI GCGC 2 cut(s) 296, 760
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 306, 457, 640
AvaI CYCGRG 2 cut(s) 200, 507
AvaII GGWCC 1 cut(s) 138
BanI GGYRCC 3 cut(s) 521, 584, 757
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 176, 442
BclI TGATCA 3 cut(s) 271, 352, 670
BcoDI GTCTC 4 cut(s) 75, 340, 442, 524
BcuI ACTAGT 1 cut(s) 850
BfaI CTAG 1 cut(s) 851
BfoI RGCGCY 2 cut(s) 297, 761
BglI GCCNNNNNGGC 1 cut(s) 746
BisI GCNGC 6 cut(s) 245, 403, 455, 474, 546, 567
BlsI GCNGC 6 cut(s) 246, 404, 456, 475, 547, 568
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 2 cut(s) 200, 507
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 3 cut(s) 523, 586, 759
BmsI GCATC 2 cut(s) 567, 766
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 260
BsaHI GRCGYC 2 cut(s) 749, 758
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 4 cut(s) 171, 458, 537, 588
BsaWI WCCGGW 3 cut(s) 316, 573, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 573, 767
Bse118I RCCGGY 4 cut(s) 205, 637, 650, 754
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 4 cut(s) 171, 458, 537, 588
BseGI GGATG 2 cut(s) 40, 582
BseLI CCNNNNNNNGG 3 cut(s) 172, 573, 767
BseMII CTCAG 1 cut(s) 353
BseX3I CGGCCG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 3 cut(s) 209, 457, 621
BshNI GGYRCC 3 cut(s) 521, 584, 757
BshTI ACCGGT 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 458
BsiHKCI CYCGRG 2 cut(s) 200, 507
BsiSI CCGG 7 cut(s) 206, 317, 574, 638, 651, 681, 755
BslFI GGGAC 2 cut(s) 356, 675
BslI CCNNNNNNNGG 3 cut(s) 172, 573, 767
BsmAI GTCTC 4 cut(s) 75, 340, 442, 524
BsmFI GGGAC 2 cut(s) 356, 675
BsnI GGCC 3 cut(s) 209, 457, 621
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 200, 507
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 6 cut(s) 25, 271, 352, 487, 670, 796
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 8 cut(s) 189, 402, 405, 454, 474, 545, 567, 632
BspANI GGCC 3 cut(s) 209, 457, 621
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 260
BspLI GGNNCC 3 cut(s) 523, 586, 759
BspPI GGATC 1 cut(s) 482
BspT107I GGYRCC 3 cut(s) 521, 584, 757
BspTNI GGTCTC 1 cut(s) 524
BsrFI RCCGGY 4 cut(s) 205, 637, 650, 754
BssAI RCCGGY 4 cut(s) 205, 637, 650, 754
BssECI CCNNGG 4 cut(s) 171, 458, 537, 588
BssMI GATC 6 cut(s) 25, 271, 352, 487, 670, 796
BssNI GRCGYC 2 cut(s) 749, 758
BssT1I CCWWGG 2 cut(s) 171, 588
Bst4CI ACNGT 3 cut(s) 75, 334, 689
BstACI GRCGYC 2 cut(s) 749, 758
BstC8I GCNNGC 4 cut(s) 207, 656, 742, 756
BstDEI CTNAG 2 cut(s) 339, 780
BstDSI CCRYGG 2 cut(s) 171, 458
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 2 cut(s) 40, 582
BstH2I RGCGCY 2 cut(s) 297, 761
BstHHI GCGC 2 cut(s) 296, 760
BstKTI GATC 6 cut(s) 28, 274, 355, 490, 673, 799
BstMAI GTCTC 4 cut(s) 75, 340, 442, 524
BstMBI GATC 6 cut(s) 25, 271, 352, 487, 670, 796
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 3 cut(s) 551, 746, 755
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BstZI CGGCCG 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 3 cut(s) 209, 457, 621
BsuTUI ATCGAT 1 cut(s) 260
BtgI CCRYGG 2 cut(s) 171, 458
BtsCI GGATG 2 cut(s) 40, 582
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 4 cut(s) 207, 656, 742, 756
CfoI GCGC 2 cut(s) 296, 760
Cfr10I RCCGGY 4 cut(s) 205, 637, 650, 754
Cfr13I GGNCC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 1 cut(s) 738
Csp6I GTAC 5 cut(s) 386, 395, 408, 801, 822
CspAI ACCGGT 1 cut(s) 637
CviAII CATG 4 cut(s) 94, 115, 172, 269
CviQI GTAC 5 cut(s) 386, 395, 408, 801, 822
DdeI CTNAG 2 cut(s) 339, 780
DinI GGCGCC 1 cut(s) 759
DpnI GATC 6 cut(s) 27, 273, 354, 489, 672, 798
DpnII GATC 6 cut(s) 25, 271, 352, 487, 670, 796
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 455
EagI CGGCCG 1 cut(s) 455
EclXI CGGCCG 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 171, 588
Eco24I GRGCYC 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 138
Eco52I CGGCCG 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 130
Eco88I CYCGRG 2 cut(s) 200, 507
Eco91I GGTNACC 1 cut(s) 646
EcoO65I GGTNACC 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 171, 588
EcoT38I GRGCYC 1 cut(s) 508
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
ErhI CCWWGG 2 cut(s) 171, 588
FaeI CATG 4 cut(s) 97, 118, 175, 272
FaqI GGGAC 2 cut(s) 356, 675
FatI CATG 4 cut(s) 93, 114, 171, 268
FbaI TGATCA 3 cut(s) 271, 352, 670
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 6 cut(s) 245, 403, 455, 474, 546, 567
FokI GGATG 2 cut(s) 27, 589
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 6 cut(s) 245, 403, 455, 474, 546, 567
FspBI CTAG 1 cut(s) 851
GlaI GCGC 2 cut(s) 295, 759
GluI GCNGC 6 cut(s) 245, 403, 455, 474, 546, 567
HaeII RGCGCY 2 cut(s) 297, 761
HaeIII GGCC 3 cut(s) 209, 457, 621
HapII CCGG 7 cut(s) 206, 317, 574, 638, 651, 681, 755
HgaI GACGC 1 cut(s) 738
HhaI GCGC 2 cut(s) 296, 760
Hin1I GRCGYC 2 cut(s) 749, 758
Hin1II CATG 4 cut(s) 97, 118, 175, 272
Hin6I GCGC 2 cut(s) 294, 758
HinP1I GCGC 2 cut(s) 294, 758
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 5 cut(s) 128, 254, 262, 326, 481
HpaII CCGG 7 cut(s) 206, 317, 574, 638, 651, 681, 755
HphI GGTGA 3 cut(s) 306, 457, 640
Hpy166II GTNNAC 4 cut(s) 124, 162, 848, 856
Hpy188I TCNGA 3 cut(s) 154, 342, 538
Hpy188III TCNNGA 5 cut(s) 23, 136, 251, 423, 485
Hpy8I GTNNAC 4 cut(s) 124, 162, 848, 856
Hpy99I CGWCG 3 cut(s) 104, 703, 754
HpyAV CCTTC 3 cut(s) 100, 154, 385
HpyCH4III ACNGT 3 cut(s) 75, 334, 689
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 746, 755
HpyF3I CTNAG 2 cut(s) 339, 780
Hsp92I GRCGYC 2 cut(s) 749, 758
Hsp92II CATG 4 cut(s) 97, 118, 175, 272
HspAI GCGC 2 cut(s) 294, 758
KasI GGCGCC 1 cut(s) 757
KroI GCCGGC 2 cut(s) 205, 754
KroNI GCCGGC 2 cut(s) 207, 756
Ksp22I TGATCA 3 cut(s) 271, 352, 670
Kzo9I GATC 6 cut(s) 25, 271, 352, 487, 670, 796
LmnI GCTCC 2 cut(s) 155, 770
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 567, 766
MaeI CTAG 1 cut(s) 851
MaeIII GTNAC 1 cut(s) 646
MalI GATC 6 cut(s) 27, 273, 354, 489, 672, 798
MboI GATC 6 cut(s) 25, 271, 352, 487, 670, 796
MboII GAAGA 3 cut(s) 11, 26, 508
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 3 cut(s) 237, 601, 615
Mly113I GGCGCC 1 cut(s) 758
MlyI GAGTC 2 cut(s) 122, 263
MreI CGCCGGCG 1 cut(s) 754
MroNI GCCGGC 2 cut(s) 205, 754
MseI TTAA 2 cut(s) 50, 182
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 7 cut(s) 206, 317, 574, 638, 651, 681, 755
MwoI GCNNNNNNNGC 3 cut(s) 551, 746, 755
NaeI GCCGGC 2 cut(s) 207, 756
NarI GGCGCC 1 cut(s) 758
NcoI CCATGG 1 cut(s) 171
NdeII GATC 6 cut(s) 25, 271, 352, 487, 670, 796
NgoMIV GCCGGC 2 cut(s) 205, 754
NlaIII CATG 4 cut(s) 97, 118, 175, 272
NlaIV GGNNCC 3 cut(s) 523, 586, 759
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 646
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdiI GCCGGC 2 cut(s) 207, 756
PfeI GAWTC 3 cut(s) 262, 326, 481
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 6 cut(s) 246, 404, 456, 475, 547, 568
PleI GAGTC 2 cut(s) 122, 262
PluTI GGCGCC 1 cut(s) 761
PpsI GAGTC 2 cut(s) 122, 262
PspEI GGTNACC 1 cut(s) 646
PspN4I GGNNCC 3 cut(s) 523, 586, 759
PspPI GGNCC 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 507
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 5 cut(s) 387, 396, 409, 802, 823
RsaNI GTAC 5 cut(s) 386, 395, 408, 801, 822
SaqAI TTAA 2 cut(s) 50, 182
SatI GCNGC 6 cut(s) 245, 403, 455, 474, 546, 567
Sau3AI GATC 6 cut(s) 25, 271, 352, 487, 670, 796
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 122, 263
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 2 cut(s) 567, 766
SfoI GGCGCC 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 507
SgrAI CRCCGGYG 1 cut(s) 754
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 249, 507
SmoI CTYRAG 2 cut(s) 249, 507
SpeI ACTAGT 1 cut(s) 850
Sse9I AATT 3 cut(s) 237, 601, 615
SsiI CCGC 8 cut(s) 189, 402, 405, 454, 474, 545, 567, 632
SspDI GGCGCC 1 cut(s) 757
SspMI CTAG 1 cut(s) 851
StyI CCWWGG 2 cut(s) 171, 588
TaaI ACNGT 3 cut(s) 75, 334, 689
TaqI TCGA 8 cut(s) 57, 99, 108, 222, 260, 484, 508, 698
TaqII GACCGA 1 cut(s) 576
TasI AATT 3 cut(s) 237, 601, 615
TatI WGTACW 1 cut(s) 385
TauI GCSGC 5 cut(s) 405, 457, 476, 548, 569
TfiI GAWTC 3 cut(s) 262, 326, 481
Tru1I TTAA 2 cut(s) 50, 182
Tru9I TTAA 2 cut(s) 50, 182
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 4 cut(s) 82, 240, 318, 642
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 742
XhoI CTCGAG 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.