Prupe.2G272300_v2.0.a1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015695
Physical Location & Seq
Forward (+)
27560942 .. 27562375
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G272300.1

Sequence Viewer

Length: 783 bp
ATGATTATGAGTGATAATAATCAATCTCTGATGCCATGCTTAACAGAACAGTGGGGAGATTTGCCATTCAAAGTTGATGACTCGGAGGACATGATTGTCTACAGCTCCCTCAACGACGCTCTTAGCTTCGGCTGGTTACCCGATCACAGCTTGTACGAATATGTCAAGCCCGAGCCCCTCCTCTATGATCCCTTTGATCACCATAATGCCCTCCCAAACTTGTTCACCCAATTCCAACAATACCATGATGTCAATAATGCTCCAATCATCTTGCCCTTTGAACATCATCATCATCATGATCAGAAGCAAGTGCAAGTAGCTGATGCAGCCGATCAAAATAAGGCGCCAAAGTCCGGGGTGGCGAGAGGGAGGCATTATAGAGGGGTCAGGCAGAGGCCGTGGGGGAAGTTCGCGGCTGAGATTCGGGACCCGGCTAAGAATGGAGCTAGAGTTTGGCTCGGGACCTACGAGACCTCTGAGGAAGCGGCTCTGGCTTATGACCGAGCCGCATACCGCATGCGTGGCTCCAAGGCTTTGCTCAATTTCCCCCACCGGATTGGCTTGAATGAGCCACCCCCTGTCCGAGTCACCGGCAAGCGCAAAGAGCCCGAGGCAGAGGCCGCCGCCGCTGCGGATGCTTCAACAACAACGCCGAAATCCGCTAAGAGGACCAAAGCCTCCTCGGTGGCTGAACATGATCATCATCAAGCAAATGTGTGCCTTACAAGGCAGAAGACCAGTATGGGTCTGCTGCCACTTGGCGAGCAACTATTGGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 ko04626 map04075 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

6.53

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26920
malus_domestica MD01G1177000.v1.1
prunus_persica Prupe.2G272300_v2.0.a1 Prupe.3G108800_v2.0.a1
pyrus_communis pycom01g18770
rosa_chinensis RchiOBHm_Chr1g0373621
rosa_laevigata RLG00000026812
rosa_multiflora Rmu_co8453887.1_g000001 Rmu_sc0013090.1_g000004
rosa_roxburghii Rroxscaffold_4G00284110
rosa_rugosa Rorug01G0378500.1
rosa_samantha Rh1AG387900 Rh1BG352300 Rh1CG365100 Rh1DG382800
rosa_wichuraiana Rw1G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 413
AciI CCGC 9 cut(s) 413, 485, 507, 514, 621, 624, 627, 632, 660
AclWI GGATC 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 353, 666
AgsI TTSAA 4 cut(s) 70, 281, 565, 642
AluBI AGCT 6 cut(s) 105, 126, 150, 320, 446, 780
AluI AGCT 6 cut(s) 105, 126, 150, 320, 446, 780
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 3 cut(s) 170, 458, 608
AoxI GGCC 2 cut(s) 395, 618
ApeKI GCWGC 3 cut(s) 326, 629, 751
AspLEI GCGC 2 cut(s) 346, 600
AspS9I GGNCC 3 cut(s) 427, 462, 669
AsuC2I CCSGG 2 cut(s) 355, 431
AsuHPI GGTGA 3 cut(s) 191, 217, 580
AvaI CYCGRG 3 cut(s) 170, 458, 608
AvaII GGWCC 3 cut(s) 427, 462, 669
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 2 cut(s) 177, 609
BbsI GAAGAC 1 cut(s) 740
BbvI GCAGC 3 cut(s) 338, 616, 738
BceAI ACGGC 1 cut(s) 382
BclI TGATCA 3 cut(s) 196, 298, 697
BcnI CCSGG 2 cut(s) 355, 431
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 2 cut(s) 447, 781
BfmI CTRYAG 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 347
BisI GCNGC 9 cut(s) 327, 414, 486, 507, 621, 624, 627, 630, 752
BlsI GCNGC 9 cut(s) 328, 415, 487, 508, 622, 625, 628, 631, 753
Bme1390I CCNGG 2 cut(s) 355, 431
Bme18I GGWCC 3 cut(s) 427, 462, 669
BmeT110I CYCGRG 3 cut(s) 170, 458, 608
BmgT120I GGNCC 3 cut(s) 427, 462, 669
BmiI GGNNCC 5 cut(s) 345, 428, 429, 463, 526
BmrFI CCNGG 2 cut(s) 355, 431
BmsI GCATC 3 cut(s) 21, 313, 625
BpiI GAAGAC 1 cut(s) 740
BplI GAGNNNNNCTC 2 cut(s) 441, 473
BpuMI CCSGG 2 cut(s) 355, 431
BsaBI GATNNNNATC 2 cut(s) 18, 702
BsaHI GRCGYC 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 5 cut(s) 354, 398, 528, 609, 681
BsaWI WCCGGW 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 666
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 738
Bse8I GATNNNNATC 2 cut(s) 18, 702
BseDI CCNNGG 5 cut(s) 354, 398, 528, 609, 681
BseGI GGATG 1 cut(s) 640
BseJI GATNNNNATC 2 cut(s) 18, 702
BseLI CCNNNNNNNGG 2 cut(s) 353, 666
BseMII CTCAG 2 cut(s) 408, 468
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 2 cut(s) 170, 670
BseXI GCAGC 3 cut(s) 338, 616, 738
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 2 cut(s) 397, 620
BshNI GGYRCC 1 cut(s) 343
BsiHKCI CYCGRG 3 cut(s) 170, 458, 608
BsiSI CCGG 4 cut(s) 354, 431, 553, 591
BslFI GGGAC 2 cut(s) 440, 475
BslI CCNNNNNNNGG 2 cut(s) 353, 666
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 440, 475
BsnI GGCC 2 cut(s) 397, 620
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 3 cut(s) 170, 458, 608
Bsp1286I GDGCHC 2 cut(s) 177, 609
Bsp143I GATC 6 cut(s) 142, 187, 196, 298, 331, 697
BspACI CCGC 9 cut(s) 413, 485, 507, 514, 621, 624, 627, 632, 660
BspANI GGCC 2 cut(s) 397, 620
BspCNI CTCAG 2 cut(s) 409, 469
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 5 cut(s) 345, 428, 429, 463, 526
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 5 cut(s) 354, 398, 528, 609, 681
BssMI GATC 6 cut(s) 142, 187, 196, 298, 331, 697
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 518, 596, 764
BstDEI CTNAG 5 cut(s) 122, 417, 435, 477, 663
BstDSI CCRYGG 1 cut(s) 398
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 640
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 2 cut(s) 346, 600
BstKTI GATC 6 cut(s) 145, 190, 199, 301, 334, 700
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 6 cut(s) 142, 187, 196, 298, 331, 697
BstMWI GCNNNNNNNGC 8 cut(s) 326, 491, 522, 604, 620, 626, 629, 635
BstNSI RCATGY 1 cut(s) 520
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 353, 429
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 3 cut(s) 338, 616, 738
BstV2I GAAGAC 1 cut(s) 740
BstXI CCANNNNNNTGG 1 cut(s) 557
BsuRI GGCC 2 cut(s) 397, 620
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 518, 596, 764
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 346, 600
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 3 cut(s) 427, 462, 669
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 154
CviAII CATG 6 cut(s) 36, 91, 245, 296, 517, 695
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 5 cut(s) 122, 417, 435, 477, 663
DinI GGCGCC 1 cut(s) 345
DpnI GATC 6 cut(s) 144, 189, 198, 300, 333, 699
DpnII GATC 6 cut(s) 142, 187, 196, 298, 331, 697
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 177, 609
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 427, 462, 669
Eco88I CYCGRG 3 cut(s) 170, 458, 608
Eco91I GGTNACC 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 427, 462
EcoO65I GGTNACC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 2 cut(s) 177, 609
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 6 cut(s) 39, 94, 248, 299, 520, 698
FaqI GGGAC 2 cut(s) 440, 475
FatI CATG 6 cut(s) 35, 90, 244, 295, 516, 694
FbaI TGATCA 3 cut(s) 196, 298, 697
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 9 cut(s) 327, 414, 486, 507, 621, 624, 627, 630, 752
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 2 cut(s) 177, 609
Fsp4HI GCNGC 9 cut(s) 327, 414, 486, 507, 621, 624, 627, 630, 752
FspBI CTAG 2 cut(s) 447, 781
GlaI GCGC 2 cut(s) 345, 599
GluI GCNGC 9 cut(s) 327, 414, 486, 507, 621, 624, 627, 630, 752
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 2 cut(s) 397, 620
HapII CCGG 4 cut(s) 354, 431, 553, 591
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 346, 600
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 6 cut(s) 39, 94, 248, 299, 520, 698
Hin6I GCGC 2 cut(s) 344, 598
HinP1I GCGC 2 cut(s) 344, 598
HinfI GANTC 3 cut(s) 80, 421, 585
HpaII CCGG 4 cut(s) 354, 431, 553, 591
HphI GGTGA 3 cut(s) 191, 217, 580
Hpy166II GTNNAC 2 cut(s) 100, 225
Hpy188I TCNGA 5 cut(s) 30, 85, 303, 478, 584
Hpy188III TCNNGA 3 cut(s) 296, 425, 460
Hpy8I GTNNAC 2 cut(s) 100, 225
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 313, 326
HpyF10VI GCNNNNNNNGC 8 cut(s) 326, 491, 522, 604, 620, 626, 629, 635
HpyF3I CTNAG 5 cut(s) 122, 417, 435, 477, 663
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 6 cut(s) 39, 94, 248, 299, 520, 698
HspAI GCGC 2 cut(s) 344, 598
KasI GGCGCC 1 cut(s) 343
KflI GGGWCCC 1 cut(s) 427
Ksp22I TGATCA 3 cut(s) 196, 298, 697
Kzo9I GATC 6 cut(s) 142, 187, 196, 298, 331, 697
LmnI GCTCC 4 cut(s) 110, 265, 443, 530
LpnPI CCDG 9 cut(s) 118, 367, 373, 444, 476, 566, 591, 604, 751
Lsp1109I GCAGC 3 cut(s) 338, 616, 738
LweI GCATC 3 cut(s) 21, 313, 625
MaeI CTAG 2 cut(s) 447, 781
MaeIII GTNAC 2 cut(s) 135, 586
MalI GATC 6 cut(s) 144, 189, 198, 300, 333, 699
MboI GATC 6 cut(s) 142, 187, 196, 298, 331, 697
MboII GAAGA 1 cut(s) 745
MhlI GDGCHC 2 cut(s) 177, 609
MluCI AATT 2 cut(s) 230, 541
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 74, 594
MmeI TCCRAC 1 cut(s) 259
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 204, 294
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 4 cut(s) 354, 431, 553, 591
MspR9I CCNGG 2 cut(s) 355, 431
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 8 cut(s) 326, 491, 522, 604, 620, 626, 629, 635
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 2 cut(s) 355, 431
NdeII GATC 6 cut(s) 142, 187, 196, 298, 331, 697
NlaIII CATG 6 cut(s) 39, 94, 248, 299, 520, 698
NlaIV GGNNCC 5 cut(s) 345, 428, 429, 463, 526
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PagI TCATGA 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 9 cut(s) 328, 415, 487, 508, 622, 625, 628, 631, 753
PleI GAGTC 2 cut(s) 74, 593
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 74, 593
PpuMI RGGWCCY 2 cut(s) 427, 462
Psp5II RGGWCCY 2 cut(s) 427, 462
PspEI GGTNACC 1 cut(s) 135
PspN4I GGNNCC 5 cut(s) 345, 428, 429, 463, 526
PspPI GGNCC 3 cut(s) 427, 462, 669
PspPPI RGGWCCY 2 cut(s) 427, 462
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 2 cut(s) 204, 294
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 9 cut(s) 327, 414, 486, 507, 621, 624, 627, 630, 752
Sau3AI GATC 6 cut(s) 142, 187, 196, 298, 331, 697
Sau96I GGNCC 3 cut(s) 427, 462, 669
SchI GAGTC 2 cut(s) 74, 594
ScrFI CCNGG 2 cut(s) 355, 431
SduI GDGCHC 2 cut(s) 177, 609
SetI ASST 8 cut(s) 107, 128, 152, 322, 448, 467, 476, 782
SfaNI GCATC 3 cut(s) 21, 313, 625
SfcI CTRYAG 1 cut(s) 100
SfoI GGCGCC 1 cut(s) 345
SinI GGWCC 3 cut(s) 427, 462, 669
SmiMI CAYNNNNRTG 2 cut(s) 204, 294
SphI GCATGC 1 cut(s) 520
Sse9I AATT 2 cut(s) 230, 541
SsiI CCGC 9 cut(s) 413, 485, 507, 514, 621, 624, 627, 632, 660
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 2 cut(s) 447, 781
StyD4I CCNGG 2 cut(s) 353, 429
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 51
TaqII GACCGA 1 cut(s) 516
TasI AATT 2 cut(s) 230, 541
TauI GCSGC 6 cut(s) 416, 488, 509, 623, 626, 629
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 3 cut(s) 326, 629, 751
Tsp45I GTSAC 1 cut(s) 586
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 427, 462, 669
XceI RCATGY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 447, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.