Rh1BG352300

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015695
Physical Location & Seq
Forward (+)
48461801 .. 48463685
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG352300.1

Sequence Viewer

Length: 948 bp
ATGCTCAGTTCTCCTTCATCATCCTCTTCCTCTTTCTCCATCACCACAGTACCACAATTTACTTTGTCATATAAGAAACAAACCACGATGACAGAGCTAAATGGTCTTCACGATCATTTTCTTCTTCATCCAAACTTAATCATCGACCCTCTAACAGAACAGTGGGGAGACTTGCCCTTCAAGTTCGACGATTTCGAGGACATGCTCGTCTACGACTCCCTCTGGACCGCCTTCAGCTCCGATTTGTCCACCCCCTCCACGGAGGACTTAACCACCGCCGTCAAGCCCGAGCCGGCCTATAACTACTTCGATGAACTACATCAAATTTTGCAGCCTCAAGAGTCATCGATTCTACATGATCAAGTTTCCATCAACATCAGCGCACCAAATGAACTATCATCACCGGAAACTGAATCAACAGTCTCTCAGACGAGCTATGATCAGCTACAAGAGGAAGTCCCTACCCCAAAAGTACAGAAGGTACTTGGCGGCGGTACGAGTAGCGTTTCAAGAGGGAGGCATTACAGAGGGGTGAGACAGCGGCCGTGGGGAAAGTTCGCCGCCGAGATTCGAGATCCGGCTAAGAACGGGGCTCGAGTGTGGCTTGGCACCTATGAGACCTCCGAGGAAGCGGCTGTGGCTTATGACCGAGCCGCTTACCGGATGCGTGGTGCCAAGGCTTTGCTCAATTTTCCACACCGAATTGGCCTGAATGAACCGCCGCCGGTTAGGGTCACCGGCAAGCGTAAAGACCCTGATCAACAAGCCGGAAACAGTCCCACATCGACGACTACAAGAACGCCGAACTTGAATAAGAGGACCAAAGCCAGCTTGGCGTCGCCGGCGCCTGATATGGGAGCTGATGCTCAGTTTGAAAGAGATGATCGTACCAGAGGAAATGTCAATCGTACAAGACATAATAGTAATGTCGGTTTACTAGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 ko04626 map04075 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

315

Amino Acids

35.02

Weight (kDa)

5.93

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 174 - 224 7.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26920
malus_domestica MD01G1177000.v1.1
prunus_persica Prupe.2G272300_v2.0.a1 Prupe.3G108800_v2.0.a1
pyrus_communis pycom01g18770
rosa_chinensis RchiOBHm_Chr1g0373621
rosa_laevigata RLG00000026812
rosa_multiflora Rmu_co8453887.1_g000001 Rmu_sc0013090.1_g000004
rosa_roxburghii Rroxscaffold_4G00284110
rosa_rugosa Rorug01G0378500.1
rosa_samantha Rh1AG387900 Rh1BG352300 Rh1CG365100 Rh1DG382800
rosa_wichuraiana Rw1G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB1I GGYRCC 3 cut(s) 608, 671, 844
AccI GTMKAC 1 cut(s) 210
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 217
AcyI GRCGYC 2 cut(s) 836, 845
AfaI GTAC 6 cut(s) 51, 474, 483, 496, 889, 910
AfiI CCNNNNNNNGG 3 cut(s) 259, 660, 854
AgsI TTSAA 4 cut(s) 181, 510, 811, 875
AhlI ACTAGT 1 cut(s) 937
AluBI AGCT 6 cut(s) 97, 237, 435, 445, 831, 860
AluI AGCT 6 cut(s) 97, 237, 435, 445, 831, 860
Alw26I GTCTC 4 cut(s) 162, 427, 529, 611
AlwI GGATC 1 cut(s) 569
Ama87I CYCGRG 2 cut(s) 287, 594
AoxI GGCC 3 cut(s) 294, 542, 706
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 2 cut(s) 383, 847
AspS9I GGNCC 2 cut(s) 225, 819
AsuHPI GGTGA 4 cut(s) 34, 393, 544, 727
AvaI CYCGRG 2 cut(s) 287, 594
AvaII GGWCC 2 cut(s) 225, 819
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
BanI GGYRCC 3 cut(s) 608, 671, 844
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 343
BccI CCATC 2 cut(s) 47, 377
BceAI ACGGC 2 cut(s) 263, 529
BclI TGATCA 3 cut(s) 358, 439, 757
BcoDI GTCTC 4 cut(s) 162, 427, 529, 611
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 1 cut(s) 938
BfoI RGCGCY 1 cut(s) 848
BglI GCCNNNNNGGC 1 cut(s) 833
BisI GCNGC 7 cut(s) 332, 490, 542, 561, 633, 654, 722
BlsI GCNGC 7 cut(s) 333, 491, 543, 562, 634, 655, 723
Bme18I GGWCC 2 cut(s) 225, 819
BmeT110I CYCGRG 2 cut(s) 287, 594
BmgT120I GGNCC 2 cut(s) 225, 819
BmiI GGNNCC 3 cut(s) 610, 673, 846
BmsI GCATC 2 cut(s) 654, 853
BpiI GAAGAC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 347
BsaHI GRCGYC 2 cut(s) 836, 845
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 4 cut(s) 258, 545, 624, 675
BsaWI WCCGGW 2 cut(s) 403, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 660, 854
Bse118I RCCGGY 4 cut(s) 292, 724, 737, 841
BseCI ATCGAT 1 cut(s) 347
BseDI CCNNGG 4 cut(s) 258, 545, 624, 675
BseGI GGATG 3 cut(s) 20, 127, 669
BseLI CCNNNNNNNGG 3 cut(s) 259, 660, 854
BseMII CTCAG 3 cut(s) 19, 440, 881
BseX3I CGGCCG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 3 cut(s) 296, 544, 708
BshNI GGYRCC 3 cut(s) 608, 671, 844
BshVI ATCGAT 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 545
BsiHKCI CYCGRG 2 cut(s) 287, 594
BsiSI CCGG 8 cut(s) 293, 404, 578, 661, 725, 738, 768, 842
BslFI GGGAC 2 cut(s) 443, 762
BslI CCNNNNNNNGG 3 cut(s) 259, 660, 854
BsmAI GTCTC 4 cut(s) 162, 427, 529, 611
BsmFI GGGAC 2 cut(s) 443, 762
BsnI GGCC 3 cut(s) 296, 544, 708
Bso31I GGTCTC 1 cut(s) 611
BsoBI CYCGRG 2 cut(s) 287, 594
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 6 cut(s) 112, 358, 439, 574, 757, 883
BspANI GGCC 3 cut(s) 296, 544, 708
BspCNI CTCAG 3 cut(s) 18, 439, 880
BspDI ATCGAT 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 610, 673, 846
BspPI GGATC 1 cut(s) 569
BspT107I GGYRCC 3 cut(s) 608, 671, 844
BspTNI GGTCTC 1 cut(s) 611
BsrFI RCCGGY 4 cut(s) 292, 724, 737, 841
BssAI RCCGGY 4 cut(s) 292, 724, 737, 841
BssECI CCNNGG 4 cut(s) 258, 545, 624, 675
BssMI GATC 6 cut(s) 112, 358, 439, 574, 757, 883
BssNI GRCGYC 2 cut(s) 836, 845
BssT1I CCWWGG 1 cut(s) 675
Bst4CI ACNGT 4 cut(s) 49, 162, 421, 776
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 2 cut(s) 836, 845
BstC8I GCNNGC 4 cut(s) 294, 743, 829, 843
BstDEI CTNAG 4 cut(s) 5, 426, 582, 867
BstDSI CCRYGG 2 cut(s) 258, 545
BstEII GGTNACC 1 cut(s) 733
BstF5I GGATG 3 cut(s) 20, 127, 669
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 2 cut(s) 383, 847
BstKTI GATC 6 cut(s) 115, 361, 442, 577, 760, 886
BstMAI GTCTC 4 cut(s) 162, 427, 529, 611
BstMBI GATC 6 cut(s) 112, 358, 439, 574, 757, 883
BstMCI CGRYCG 1 cut(s) 545
BstMWI GCNNNNNNNGC 3 cut(s) 638, 833, 842
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 733
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 542
Bsu15I ATCGAT 1 cut(s) 347
BsuRI GGCC 3 cut(s) 296, 544, 708
BsuTUI ATCGAT 1 cut(s) 347
BtgI CCRYGG 2 cut(s) 258, 545
BtsCI GGATG 3 cut(s) 20, 127, 669
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 4 cut(s) 294, 743, 829, 843
CfoI GCGC 2 cut(s) 383, 847
Cfr10I RCCGGY 4 cut(s) 292, 724, 737, 841
Cfr13I GGNCC 2 cut(s) 225, 819
ClaI ATCGAT 1 cut(s) 347
CseI GACGC 1 cut(s) 825
Csp6I GTAC 6 cut(s) 50, 473, 482, 495, 888, 909
CviAII CATG 2 cut(s) 202, 356
CviQI GTAC 6 cut(s) 50, 473, 482, 495, 888, 909
DdeI CTNAG 4 cut(s) 5, 426, 582, 867
DinI GGCGCC 1 cut(s) 846
DpnI GATC 6 cut(s) 114, 360, 441, 576, 759, 885
DpnII GATC 6 cut(s) 112, 358, 439, 574, 757, 883
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 542
EagI CGGCCG 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 225, 819
Eco52I CGGCCG 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 287, 594
Eco91I GGTNACC 1 cut(s) 733
EcoO65I GGTNACC 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 846
EheI GGCGCC 1 cut(s) 846
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 2 cut(s) 205, 359
FaqI GGGAC 2 cut(s) 443, 762
FatI CATG 2 cut(s) 201, 355
FbaI TGATCA 3 cut(s) 358, 439, 757
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 7 cut(s) 332, 490, 542, 561, 633, 654, 722
FokI GGATG 3 cut(s) 7, 114, 676
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 7 cut(s) 332, 490, 542, 561, 633, 654, 722
FspBI CTAG 1 cut(s) 938
GlaI GCGC 2 cut(s) 382, 846
GluI GCNGC 7 cut(s) 332, 490, 542, 561, 633, 654, 722
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 3 cut(s) 296, 544, 708
HapII CCGG 8 cut(s) 293, 404, 578, 661, 725, 738, 768, 842
HgaI GACGC 1 cut(s) 825
HhaI GCGC 2 cut(s) 383, 847
Hin1I GRCGYC 2 cut(s) 836, 845
Hin1II CATG 2 cut(s) 205, 359
Hin6I GCGC 2 cut(s) 381, 845
HinP1I GCGC 2 cut(s) 381, 845
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 5 cut(s) 215, 341, 349, 413, 568
HpaII CCGG 8 cut(s) 293, 404, 578, 661, 725, 738, 768, 842
HphI GGTGA 4 cut(s) 34, 393, 544, 727
Hpy166II GTNNAC 4 cut(s) 211, 249, 935, 943
Hpy188I TCNGA 3 cut(s) 241, 429, 625
Hpy188III TCNNGA 5 cut(s) 110, 223, 338, 510, 572
Hpy8I GTNNAC 4 cut(s) 211, 249, 935, 943
Hpy99I CGWCG 3 cut(s) 191, 790, 841
HpyAV CCTTC 4 cut(s) 24, 187, 241, 472
HpyCH4III ACNGT 4 cut(s) 49, 162, 421, 776
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 638, 833, 842
HpyF3I CTNAG 4 cut(s) 5, 426, 582, 867
Hsp92I GRCGYC 2 cut(s) 836, 845
Hsp92II CATG 2 cut(s) 205, 359
HspAI GCGC 2 cut(s) 381, 845
KasI GGCGCC 1 cut(s) 844
KroI GCCGGC 2 cut(s) 292, 841
KroNI GCCGGC 2 cut(s) 294, 843
Ksp22I TGATCA 3 cut(s) 358, 439, 757
Kzo9I GATC 6 cut(s) 112, 358, 439, 574, 757, 883
LmnI GCTCC 2 cut(s) 242, 857
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 2 cut(s) 654, 853
MaeI CTAG 1 cut(s) 938
MaeIII GTNAC 1 cut(s) 733
MalI GATC 6 cut(s) 114, 360, 441, 576, 759, 885
MboI GATC 6 cut(s) 112, 358, 439, 574, 757, 883
MboII GAAGA 4 cut(s) 18, 98, 113, 116
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 4 cut(s) 56, 324, 688, 702
Mly113I GGCGCC 1 cut(s) 845
MlyI GAGTC 2 cut(s) 209, 350
MreI CGCCGGCG 1 cut(s) 841
MroNI GCCGGC 2 cut(s) 292, 841
MseI TTAA 2 cut(s) 137, 269
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 8 cut(s) 293, 404, 578, 661, 725, 738, 768, 842
MwoI GCNNNNNNNGC 3 cut(s) 638, 833, 842
NaeI GCCGGC 2 cut(s) 294, 843
NarI GGCGCC 1 cut(s) 845
NdeII GATC 6 cut(s) 112, 358, 439, 574, 757, 883
NgoMIV GCCGGC 2 cut(s) 292, 841
NlaIII CATG 2 cut(s) 205, 359
NlaIV GGNNCC 3 cut(s) 610, 673, 846
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 733
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 2 cut(s) 294, 843
PfeI GAWTC 3 cut(s) 349, 413, 568
PkrI GCNGC 7 cut(s) 333, 491, 543, 562, 634, 655, 723
PleI GAGTC 2 cut(s) 209, 349
PluTI GGCGCC 1 cut(s) 848
PpsI GAGTC 2 cut(s) 209, 349
PspEI GGTNACC 1 cut(s) 733
PspN4I GGNNCC 3 cut(s) 610, 673, 846
PspPI GGNCC 2 cut(s) 225, 819
PspXI VCTCGAGB 1 cut(s) 594
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 6 cut(s) 51, 474, 483, 496, 889, 910
RsaNI GTAC 6 cut(s) 50, 473, 482, 495, 888, 909
SaqAI TTAA 2 cut(s) 137, 269
SatI GCNGC 7 cut(s) 332, 490, 542, 561, 633, 654, 722
Sau3AI GATC 6 cut(s) 112, 358, 439, 574, 757, 883
Sau96I GGNCC 2 cut(s) 225, 819
SchI GAGTC 2 cut(s) 209, 350
SduI GDGCHC 1 cut(s) 595
SetI ASST 9 cut(s) 99, 239, 437, 447, 483, 614, 623, 833, 862
SfaNI GCATC 2 cut(s) 654, 853
SfoI GGCGCC 1 cut(s) 846
Sfr274I CTCGAG 1 cut(s) 594
SgrAI CRCCGGYG 1 cut(s) 841
SinI GGWCC 2 cut(s) 225, 819
SlaI CTCGAG 1 cut(s) 594
SmlI CTYRAG 2 cut(s) 336, 594
SmoI CTYRAG 2 cut(s) 336, 594
SpeI ACTAGT 1 cut(s) 937
Sse9I AATT 4 cut(s) 56, 324, 688, 702
SspDI GGCGCC 1 cut(s) 844
SspMI CTAG 1 cut(s) 938
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 4 cut(s) 49, 162, 421, 776
TaqI TCGA 8 cut(s) 144, 186, 195, 309, 347, 571, 595, 785
TaqII GACCGA 1 cut(s) 663
TasI AATT 4 cut(s) 56, 324, 688, 702
TatI WGTACW 1 cut(s) 472
TauI GCSGC 6 cut(s) 492, 544, 563, 635, 656, 724
TfiI GAWTC 3 cut(s) 349, 413, 568
Tru1I TTAA 2 cut(s) 137, 269
Tru9I TTAA 2 cut(s) 137, 269
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 5 cut(s) 6, 116, 327, 405, 729
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 225, 819
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 594
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.