FvH4_7g27580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017367
Physical Location & Seq
Forward (+)
20559842 .. 20560849
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27580.t1

Sequence Viewer

Length: 486 bp
ATGTCCATCATGTCTTCTCTTTTCTTCATCATTCTGTTTTTTGCTTCCATGCATGCAAATTCTGAGGCTCGCTATATTGGACTTGGCCGCAGCAATAAGGGTTTTAGCGCAGTGTTCCCTCATCCAGACAAGGGTCAGTTTCTAGTTGTGGAGAAGTTGAGGCTTGGAATGGATTCGAGTACTAAAGGGTCAGTACTAGTTGAGCAGGATGATGATCTAGCTGCTGAGCAGAAGGGTAATGATGGTGGAACAGTTTTCAGTAGTCCTACTACTACTAAAGGTATGAAGGATTACTCAAGAACTAGTACTACTACAAAAGCAGATGTTGTTCCAGATGTTAAGCCTCATGTTAGAGCTTCTATGTCTGTACCGCAACAGAATAAAAATCGCGACAAGAACATCAACCATGGTGACAAAACTAGTAGTAATCCTGGGATTTACTCCGACTATTCAAGACCAAGAACGCGTCCTCCCTCCCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.67

Weight (kDa)

9.52

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017367)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27580
malus_domestica MD07G1254200.v1.1
prunus_persica Prupe.2G277500_v2.0.a1
pyrus_communis pycom01g19360
rosa_laevigata RLG00000026737
rosa_roxburghii Rroxscaffold_4G00283480
rosa_rugosa Rorug01G0383000 Rorug01G0383100.1
rosa_samantha Rh1AG394000 Rh1BG358600 Rh1CG371600 Rh1DG389200
rosa_wichuraiana Rw1G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 390, 466
AciI CCGC 2 cut(s) 88, 371
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 4 cut(s) 181, 195, 307, 369
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 1 cut(s) 453
AhlI ACTAGT 3 cut(s) 196, 302, 419
AjnI CCWGG 1 cut(s) 430
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
AluBI AGCT 2 cut(s) 221, 356
AluI AGCT 2 cut(s) 221, 356
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 90, 221
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 102, 208
BccI CCATC 2 cut(s) 14, 236
BciT130I CCWGG 1 cut(s) 432
BcuI ACTAGT 3 cut(s) 196, 302, 419
BfaI CTAG 5 cut(s) 143, 197, 218, 303, 420
BisI GCNGC 3 cut(s) 88, 91, 222
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 3 cut(s) 89, 92, 223
BmcAI AGTACT 3 cut(s) 181, 195, 307
Bme1390I CCNGG 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 432
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 406, 431
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 406, 431
BseGI GGATG 2 cut(s) 121, 214
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 54, 216
BseXI GCAGC 2 cut(s) 102, 208
Bsh1236I CGCG 2 cut(s) 390, 466
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 406
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 2 cut(s) 88, 371
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 55, 217
BspFNI CGCG 2 cut(s) 390, 466
BssECI CCNNGG 2 cut(s) 406, 431
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 54, 70
BstDEI CTNAG 2 cut(s) 63, 225
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 121, 214
BstFNI CGCG 2 cut(s) 390, 466
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 56
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 430
BstUI CGCG 2 cut(s) 390, 466
BstV1I GCAGC 2 cut(s) 102, 208
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 121, 214
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 54, 70
CfoI GCGC 1 cut(s) 110
CseI GACGC 1 cut(s) 455
Csp6I GTAC 4 cut(s) 180, 194, 306, 368
CviAII CATG 5 cut(s) 10, 49, 53, 347, 407
CviJI RGCY 6 cut(s) 68, 87, 163, 221, 343, 356
CviKI_1 RGCY 6 cut(s) 68, 87, 163, 221, 343, 356
CviQI GTAC 4 cut(s) 180, 194, 306, 368
DdeI CTNAG 2 cut(s) 63, 225
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 5 cut(s) 13, 52, 56, 350, 410
FaiI YATR 8 cut(s) 11, 50, 54, 75, 284, 348, 362, 408
FatI CATG 5 cut(s) 9, 48, 52, 346, 406
Fnu4HI GCNGC 3 cut(s) 88, 91, 222
FokI GGATG 2 cut(s) 108, 221
Fsp4HI GCNGC 3 cut(s) 88, 91, 222
FspBI CTAG 5 cut(s) 143, 197, 218, 303, 420
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 88, 91, 222
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 13, 52, 56, 350, 410
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 64, 445
Hpy188III TCNNGA 5 cut(s) 125, 297, 332, 389, 453
HpyAV CCTTC 2 cut(s) 226, 280
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 52, 56
HpyF3I CTNAG 2 cut(s) 63, 225
Hsp92II CATG 5 cut(s) 13, 52, 56, 350, 410
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 138, 191, 345, 417, 444
Lsp1109I GCAGC 2 cut(s) 102, 208
MaeI CTAG 5 cut(s) 143, 197, 218, 303, 420
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 6, 16
MluCI AATT 1 cut(s) 58
MluI ACGCGT 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 6 cut(s) 58, 129, 153, 354, 480, 484
Mph1103I ATGCAT 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 2 cut(s) 390, 466
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 214
NlaIII CATG 5 cut(s) 13, 52, 56, 350, 410
NmuCI GTSAC 1 cut(s) 410
NruI TCGCGA 1 cut(s) 390
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 3 cut(s) 89, 92, 223
PshAI GACNNNNGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 4 cut(s) 181, 195, 307, 369
RsaNI GTAC 4 cut(s) 180, 194, 306, 368
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 88, 91, 222
Sau3AI GATC 1 cut(s) 214
ScaI AGTACT 3 cut(s) 181, 195, 307
ScrFI CCNGG 1 cut(s) 432
SetI ASST 3 cut(s) 223, 283, 358
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SpeI ACTAGT 3 cut(s) 196, 302, 419
SphI GCATGC 1 cut(s) 56
Sse9I AATT 1 cut(s) 58
SsiI CCGC 2 cut(s) 88, 371
SspMI CTAG 5 cut(s) 143, 197, 218, 303, 420
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 58
TatI WGTACW 3 cut(s) 179, 193, 305
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 90, 221
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 16, 299
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 5 cut(s) 143, 197, 218, 303, 420
ZrmI AGTACT 3 cut(s) 181, 195, 307
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.