pycom01g19360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0017367
Physical Location & Seq
Forward (+)
18046533 .. 18047335
803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19360.2

Sequence Viewer

Length: 477 bp
ATGTCGAGTATCATATATTCTGTTTTCTCGATCTTTCTTCTGTTTCTTTCCATGCATGAATGCCAGGCTCGCTATATCGTGCTTGTCCCTAAGGGTGTTGGAGCAACATTCCAACCTTCCAGCAAGGGTTTGTTGCTTGTGGAAAAGTTTAAAACACTTGGAATGGATTCCAGTAAAGGATTCGTTACGAAGGAAGATGATGAAGTTGAAAAGGTTCATGGTGGAGCAATCACTAGTACGACTACTCAAGACACAAATGAAACAAAGGACTCAAAGACTCCTCCTCCTCCTGTAAATGAAGTGAAGTACAATAGCAGAGGACAAAAATCAGGTGTTGTACCAGCTACTAAGCCTCTTGTTTCAGTTTCTTGGCCTGTACCGCGCAAGATTAATCGCGCCAAGAACCATGGAAAAACTAATCCCGGGATTTACTCAGATTATTCGAGACCAAGAACACGTCCTCCATCCCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

9.74

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017367)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27580
malus_domestica MD07G1254200.v1.1
prunus_persica Prupe.2G277500_v2.0.a1
pyrus_communis pycom01g19360
rosa_laevigata RLG00000026737
rosa_roxburghii Rroxscaffold_4G00283480
rosa_rugosa Rorug01G0383000 Rorug01G0383100.1
rosa_samantha Rh1AG394000 Rh1BG358600 Rh1CG371600 Rh1DG389200
rosa_wichuraiana Rw1G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 382, 396
AciI CCGC 1 cut(s) 380
AfaI GTAC 4 cut(s) 238, 308, 339, 378
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 233
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 445, 477
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 1 cut(s) 371
AseI ATTAAT 1 cut(s) 390
Asp700I GAANNNNTTC 2 cut(s) 166, 213
AspLEI GCGC 2 cut(s) 384, 398
AsuC2I CCSGG 2 cut(s) 423, 424
AvaI CYCGRG 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 90
BccI CCATC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 2 cut(s) 423, 424
BcoDI GTCTC 1 cut(s) 439
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 1 cut(s) 234
Bme1390I CCNGG 3 cut(s) 65, 423, 424
BmeT110I CYCGRG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 458
BmrFI CCNGG 3 cut(s) 65, 423, 424
BpuEI CTTGAG 1 cut(s) 231
BpuMI CCSGG 2 cut(s) 423, 424
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 406, 422
BsaXI ACNNNNNCTCC 4 cut(s) 268, 298, 445, 475
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 406, 422
BseGI GGATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 3 cut(s) 270, 273, 276
Bsh1236I CGCG 2 cut(s) 382, 396
BshFI GGCC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 422
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 1 cut(s) 380
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 446
BspFNI CGCG 2 cut(s) 382, 396
BspTNI GGTCTC 1 cut(s) 439
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 406, 422
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 90, 348, 433
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 2 cut(s) 382, 396
BstHHI GCGC 2 cut(s) 384, 398
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 69, 379
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 63, 421, 422
BstUI CGCG 2 cut(s) 382, 396
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 384, 398
Cfr9I CCCGGG 1 cut(s) 422
Csp6I GTAC 4 cut(s) 237, 307, 338, 377
CviAII CATG 4 cut(s) 52, 56, 218, 407
CviJI RGCY 4 cut(s) 68, 344, 352, 373
CviKI_1 RGCY 4 cut(s) 68, 344, 352, 373
CviQI GTAC 4 cut(s) 237, 307, 338, 377
DdeI CTNAG 3 cut(s) 90, 348, 433
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraI TTTAAA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 439
Eco81I CCTNAGG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 4 cut(s) 55, 59, 221, 410
FaiI YATR 8 cut(s) 14, 16, 53, 57, 75, 219, 408, 471
FaqI GGGAC 1 cut(s) 71
FatI CATG 4 cut(s) 51, 55, 217, 406
FokI GGATG 1 cut(s) 451
FspBI CTAG 1 cut(s) 234
GlaI GCGC 2 cut(s) 383, 397
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 423
HhaI GCGC 2 cut(s) 384, 398
Hin1II CATG 4 cut(s) 55, 59, 221, 410
Hin6I GCGC 2 cut(s) 382, 396
HinP1I GCGC 2 cut(s) 382, 396
HinfI GANTC 4 cut(s) 167, 180, 269, 277
HpaII CCGG 1 cut(s) 423
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 3 cut(s) 28, 248, 444
HpyAV CCTTC 2 cut(s) 126, 184
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 379
HpyF3I CTNAG 3 cut(s) 90, 348, 433
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 55, 59, 221, 410
HspAI GCGC 2 cut(s) 382, 396
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 101, 224
LpnPI CCDG 9 cut(s) 50, 77, 133, 184, 303, 315, 354, 387, 436
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 29, 206
MlyI GAGTC 2 cut(s) 263, 271
MmeI TCCRAC 2 cut(s) 79, 136
MnlI CCTC 6 cut(s) 291, 294, 297, 311, 363, 471
Mph1103I ATGCAT 1 cut(s) 57
MroXI GAANNNNTTC 2 cut(s) 166, 213
MseI TTAA 2 cut(s) 150, 390
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 3 cut(s) 65, 423, 424
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 382, 396
MwoI GCNNNNNNNGC 2 cut(s) 69, 379
NciI CCSGG 2 cut(s) 423, 424
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 30
NlaIII CATG 4 cut(s) 55, 59, 221, 410
NsiI ATGCAT 1 cut(s) 57
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 2 cut(s) 166, 213
PfeI GAWTC 2 cut(s) 167, 180
PleI GAGTC 2 cut(s) 263, 271
PpsI GAGTC 2 cut(s) 263, 271
PshBI ATTAAT 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
RsaI GTAC 4 cut(s) 238, 308, 339, 378
RsaNI GTAC 4 cut(s) 237, 307, 338, 377
SaqAI TTAA 2 cut(s) 150, 390
Sau3AI GATC 1 cut(s) 30
SchI GAGTC 2 cut(s) 263, 271
ScrFI CCNGG 3 cut(s) 65, 423, 424
SetI ASST 5 cut(s) 118, 216, 334, 346, 460
SmaI CCCGGG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 233
SsiI CCGC 1 cut(s) 380
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 63, 421, 422
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 1 cut(s) 460
TaqI TCGA 3 cut(s) 5, 29, 443
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 2 cut(s) 167, 180
Tru1I TTAA 2 cut(s) 150, 390
Tru9I TTAA 2 cut(s) 150, 390
TspDTI ATGAA 5 cut(s) 72, 206, 216, 273, 312
TspMI CCCGGG 1 cut(s) 422
VspI ATTAAT 1 cut(s) 390
XmaI CCCGGG 1 cut(s) 422
XmnI GAANNNNTTC 2 cut(s) 166, 213
XspI CTAG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.