Rroxscaffold_4G00283480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017367
Physical Location & Seq
Reverse (-)
5416073 .. 5418272
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283480.1

Sequence Viewer

Length: 714 bp
ATGTCCATCATGTCTTCTCTTTTCTTCACCCTTCTGTGTTTTTCTTCCATGCATGCAAATTCTGAGGCTCGCTATATTGGACTTGGCCGCAGCCATAAAGGTTTTCGCGAACTGTTCCCTCATTCGGACAAGGGTCAGTTTCTAGTTGTGGAAAAGTTGAGGCTTGGAATAGATTCGAGTACGAAAGGGTCGGTACTAGTTAAGCAGGATGATGATCTAGCTGGTGAGCAGACGGGTAATCATGGTGGAGCAGTTGTCAGTAGTAGTAGTACTACTACTACTAAAGGTACAAAGGATTACTCAAGAACTAGTACTAGTACTACTACAAAATCAGATGTTGTTGTTCCAGATATTAAGCCTCATGTTTCAGCTTCTTGGTCTGTGCCGCATCAGATTACAAATCGCGACAAGATCATCAACACTGGTGACAAAAGTAGTAGTAATCCTGGGATTTACTCGGATTATTCAAGACCAAGAACGCGGAAATTGGAATACGCAGGAAGTGAGATTTTTGAGTCTTCTAGTTCTACTTCTGCTCACATGGGTTTGCATAAAGATAAAGCAACAACTACTATCACTAAGGAATCAAGAAGGAGAGGGCTATATGCTATAGAAAGACAGGCTAACAAAGTAGAAGATGATGATGATGGTGTGGCGCTTGACGATTATAAGCCACCACATCAGACACCTCCCATTCACAACAGAAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.07

Weight (kDa)

9.06

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017367)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27580
malus_domestica MD07G1254200.v1.1
prunus_persica Prupe.2G277500_v2.0.a1
pyrus_communis pycom01g19360
rosa_laevigata RLG00000026737
rosa_roxburghii Rroxscaffold_4G00283480
rosa_rugosa Rorug01G0383000 Rorug01G0383100.1
rosa_samantha Rh1AG394000 Rh1BG358600 Rh1CG371600 Rh1DG389200
rosa_wichuraiana Rw1G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccII CGCG 3 cut(s) 108, 405, 481
AciI CCGC 3 cut(s) 88, 386, 481
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 6 cut(s) 181, 195, 271, 289, 313, 319
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 468
AhlI ACTAGT 3 cut(s) 196, 308, 314
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 2 cut(s) 221, 371
AluI AGCT 2 cut(s) 221, 371
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 19, 236, 437
BbsI GAAGAC 2 cut(s) 6, 510
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 14, 641
BciT130I CCWGG 1 cut(s) 447
BcuI ACTAGT 3 cut(s) 196, 308, 314
BfaI CTAG 6 cut(s) 143, 197, 218, 309, 315, 522
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 659
BisI GCNGC 3 cut(s) 88, 91, 386
BlsI GCNGC 3 cut(s) 89, 92, 387
BmcAI AGTACT 3 cut(s) 271, 313, 319
Bme1390I CCNGG 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 2 cut(s) 6, 510
BpuEI CTTGAG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 427
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 3 cut(s) 108, 405, 481
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 124
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 214, 411
Bsp68I TCGCGA 2 cut(s) 108, 405
BspACI CCGC 3 cut(s) 88, 386, 481
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 3 cut(s) 108, 405, 481
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 2 cut(s) 214, 411
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 54, 70
BstDEI CTNAG 2 cut(s) 63, 579
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 3 cut(s) 108, 405, 481
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 2 cut(s) 217, 414
BstMBI GATC 2 cut(s) 214, 411
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 56
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 3 cut(s) 108, 405, 481
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 2 cut(s) 6, 510
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 420
BtuMI TCGCGA 2 cut(s) 108, 405
Cac8I GCNNGC 2 cut(s) 54, 70
CfoI GCGC 1 cut(s) 658
Csp6I GTAC 6 cut(s) 180, 194, 270, 288, 312, 318
CviAII CATG 6 cut(s) 10, 49, 53, 242, 362, 541
CviQI GTAC 6 cut(s) 180, 194, 270, 288, 312, 318
DdeI CTNAG 2 cut(s) 63, 579
DpnI GATC 2 cut(s) 216, 413
DpnII GATC 2 cut(s) 214, 411
EaeI YGGCCR 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 54
FaeI CATG 6 cut(s) 13, 52, 56, 245, 365, 544
FatI CATG 6 cut(s) 9, 48, 52, 241, 361, 540
Fnu4HI GCNGC 3 cut(s) 88, 91, 386
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 88, 91, 386
FspBI CTAG 6 cut(s) 143, 197, 218, 309, 315, 522
GlaI GCGC 1 cut(s) 657
GluI GCNGC 3 cut(s) 88, 91, 386
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 1 cut(s) 87
HhaI GCGC 1 cut(s) 658
Hin1II CATG 6 cut(s) 13, 52, 56, 245, 365, 544
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HinfI GANTC 3 cut(s) 173, 515, 584
HphI GGTGA 3 cut(s) 19, 236, 437
Hpy188I TCNGA 6 cut(s) 64, 127, 334, 393, 460, 684
Hpy188III TCNNGA 6 cut(s) 107, 303, 347, 404, 468, 588
HpyAV CCTTC 2 cut(s) 41, 585
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 52, 56, 550
HpyF3I CTNAG 2 cut(s) 63, 579
Hsp92II CATG 6 cut(s) 13, 52, 56, 245, 365, 544
HspAI GCGC 1 cut(s) 656
Kzo9I GATC 2 cut(s) 214, 411
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 191, 207, 360, 408, 432, 459, 483, 605
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 397
MaeI CTAG 6 cut(s) 143, 197, 218, 309, 315, 522
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 216, 413
MboI GATC 2 cut(s) 214, 411
MboII GAAGA 5 cut(s) 6, 16, 36, 510, 647
MluCI AATT 2 cut(s) 58, 485
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 6 cut(s) 58, 129, 153, 369, 590, 699
Mph1103I ATGCAT 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 2 cut(s) 201, 354
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 3 cut(s) 108, 405, 481
NdeII GATC 2 cut(s) 214, 411
NlaIII CATG 6 cut(s) 13, 52, 56, 245, 365, 544
NmuCI GTSAC 1 cut(s) 425
NruI TCGCGA 2 cut(s) 108, 405
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 173, 584
PkrI GCNGC 3 cut(s) 89, 92, 387
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 132
PsiI TTATAA 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
RruI TCGCGA 2 cut(s) 108, 405
RsaI GTAC 6 cut(s) 181, 195, 271, 289, 313, 319
RsaNI GTAC 6 cut(s) 180, 194, 270, 288, 312, 318
SaqAI TTAA 2 cut(s) 201, 354
SatI GCNGC 3 cut(s) 88, 91, 386
Sau3AI GATC 2 cut(s) 214, 411
ScaI AGTACT 3 cut(s) 271, 313, 319
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 447
SetI ASST 5 cut(s) 103, 223, 289, 373, 691
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SpeI ACTAGT 3 cut(s) 196, 308, 314
SphI GCATGC 1 cut(s) 56
Sse9I AATT 2 cut(s) 58, 485
SsiI CCGC 3 cut(s) 88, 386, 481
SspMI CTAG 6 cut(s) 143, 197, 218, 309, 315, 522
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 58, 485
TatI WGTACW 3 cut(s) 269, 311, 317
TauI GCSGC 2 cut(s) 90, 388
TfiI GAWTC 2 cut(s) 173, 584
Tru1I TTAA 2 cut(s) 201, 354
Tru9I TTAA 2 cut(s) 201, 354
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 425
TspRI CASTG 1 cut(s) 427
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 6 cut(s) 143, 197, 218, 309, 315, 522
ZrmI AGTACT 3 cut(s) 271, 313, 319
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.