RLG00000026737

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017367
Physical Location & Seq
Reverse (-)
5418390 .. 5419967
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026737

Sequence Viewer

Length: 663 bp
ATGCATGCAAATTCTGAGGCCCGCTATATTGGACTTGGCCGCAGCCATAAGGGTTTTCGCGCACTGTTCCCTCATTCGGACAAGGGTCAGTTTTTAGTTGTGGAAAAGTTGAGGCTTGGAATAGATTCGAGTACGAAAGGGTCGGTACTAGTTAAGCAGGATGATGATCTAGCTGGTGAGCGGACGGGTAATCATGGTGGAGTTGTTAGTAGTAGTAGTACTACTACTACTAAAGGTACAAAGGATTACTCAAGAACTAGTACCAGTACTACTACAAAATCAGATGTTGTTGTTCCAGATGTTAAGCCTCATGTTTCAGCTTCTTGGTCTGTGCCGCATCAGATTAAAAATCGCGACAAGATCATCAACACTGGTGACAAAAGAAGTAGTAATCCTGGGATTTACTCGGATTACTCAAGACCAAGAACGCGGAAATTGGAATACGCAGGAAGTGAGATTTTTGAGTCTTCTAGTTCTACTTCTGCTCACATGGGTTTGCATAAAGATAAAGCAACAACTACTATCACTAAGGAATCAAGAAGGAGAGGGCTATATGCTAAAGAAAGACAGACTAACGAAGCAGAAGATGATGATGATGGTGTGGTGCTTGACGATTATAAGCCACCGCATCCGACACCTCCCATTCACAACAAAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.23

Weight (kDa)

9.47

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017367)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27580
malus_domestica MD07G1254200.v1.1
prunus_persica Prupe.2G277500_v2.0.a1
pyrus_communis pycom01g19360
rosa_laevigata RLG00000026737
rosa_roxburghii Rroxscaffold_4G00283480
rosa_rugosa Rorug01G0383000 Rorug01G0383100.1
rosa_samantha Rh1AG394000 Rh1BG358600 Rh1CG371600 Rh1DG389200
rosa_wichuraiana Rw1G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 3 cut(s) 60, 354, 430
AciI CCGC 6 cut(s) 22, 40, 181, 335, 430, 626
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 6 cut(s) 133, 147, 220, 238, 262, 268
AfiI CCNNNNNNNGG 1 cut(s) 76
AhlI ACTAGT 2 cut(s) 148, 257
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 2 cut(s) 173, 320
AluI AGCT 2 cut(s) 173, 320
AoxI GGCC 2 cut(s) 18, 37
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 188, 386
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 396
BcuI ACTAGT 2 cut(s) 148, 257
BfaI CTAG 4 cut(s) 149, 170, 258, 471
BisI GCNGC 3 cut(s) 40, 43, 335
BlsI GCNGC 3 cut(s) 41, 44, 336
BmcAI AGTACT 2 cut(s) 220, 268
Bme1390I CCNGG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 346, 637
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 2 cut(s) 235, 400
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 264, 376
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 166, 628
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 2 cut(s) 264, 376
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 3 cut(s) 60, 354, 430
BshFI GGCC 2 cut(s) 20, 39
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 2 cut(s) 20, 39
Bsp143I GATC 2 cut(s) 166, 360
Bsp68I TCGCGA 1 cut(s) 354
BspACI CCGC 6 cut(s) 22, 40, 181, 335, 430, 626
BspANI GGCC 2 cut(s) 20, 39
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 3 cut(s) 60, 354, 430
BsrBI CCGCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 264, 376
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 2 cut(s) 166, 360
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 6, 22
BstDEI CTNAG 2 cut(s) 15, 528
BstF5I GGATG 2 cut(s) 166, 628
BstFNI CGCG 3 cut(s) 60, 354, 430
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 169, 363
BstMBI GATC 2 cut(s) 166, 360
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 394
BstUI CGCG 3 cut(s) 60, 354, 430
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 2 cut(s) 20, 39
BtsCI GGATG 2 cut(s) 166, 628
BtsIMutI CAGTG 2 cut(s) 62, 369
BtuMI TCGCGA 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 6, 22
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 6 cut(s) 132, 146, 219, 237, 261, 267
CviAII CATG 4 cut(s) 5, 194, 311, 490
CviJI RGCY 9 cut(s) 20, 39, 45, 115, 173, 307, 320, 550, 622
CviKI_1 RGCY 9 cut(s) 20, 39, 45, 115, 173, 307, 320, 550, 622
CviQI GTAC 6 cut(s) 132, 146, 219, 237, 261, 267
DdeI CTNAG 2 cut(s) 15, 528
DpnI GATC 2 cut(s) 168, 362
DpnII GATC 2 cut(s) 166, 360
EaeI YGGCCR 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 197, 314, 493
FatI CATG 4 cut(s) 4, 193, 310, 489
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 40, 43, 335
FokI GGATG 2 cut(s) 173, 615
Fsp4HI GCNGC 3 cut(s) 40, 43, 335
FspBI CTAG 4 cut(s) 149, 170, 258, 471
GlaI GCGC 1 cut(s) 61
GluI GCNGC 3 cut(s) 40, 43, 335
HaeIII GGCC 2 cut(s) 20, 39
HhaI GCGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 8, 197, 314, 493
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 3 cut(s) 125, 464, 533
HphI GGTGA 2 cut(s) 188, 386
Hpy188I TCNGA 6 cut(s) 16, 79, 283, 342, 409, 633
Hpy188III TCNNGA 5 cut(s) 252, 296, 353, 417, 537
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 4, 8, 499
HpyF3I CTNAG 2 cut(s) 15, 528
Hsp92II CATG 4 cut(s) 8, 197, 314, 493
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 166, 360
LpnPI CCDG 8 cut(s) 143, 159, 277, 309, 357, 381, 408, 432
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 2 cut(s) 346, 637
MaeI CTAG 4 cut(s) 149, 170, 258, 471
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 168, 362
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 166, 360
MboII GAAGA 2 cut(s) 459, 596
MluCI AATT 2 cut(s) 10, 434
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 6 cut(s) 10, 81, 105, 318, 539, 648
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 3 cut(s) 153, 303, 345
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 3 cut(s) 60, 354, 430
NdeII GATC 2 cut(s) 166, 360
NlaIII CATG 4 cut(s) 8, 197, 314, 493
NmuCI GTSAC 1 cut(s) 374
NruI TCGCGA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 125, 533
PkrI GCNGC 3 cut(s) 41, 44, 336
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PshAI GACNNNNGTC 1 cut(s) 84
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspPI GGNCC 1 cut(s) 19
RruI TCGCGA 1 cut(s) 354
RsaI GTAC 6 cut(s) 133, 147, 220, 238, 262, 268
RsaNI GTAC 6 cut(s) 132, 146, 219, 237, 261, 267
SaqAI TTAA 3 cut(s) 153, 303, 345
SatI GCNGC 3 cut(s) 40, 43, 335
Sau3AI GATC 2 cut(s) 166, 360
Sau96I GGNCC 1 cut(s) 19
ScaI AGTACT 2 cut(s) 220, 268
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 396
SetI ASST 4 cut(s) 175, 238, 322, 640
SfaNI GCATC 2 cut(s) 346, 637
SmlI CTYRAG 2 cut(s) 250, 415
SmoI CTYRAG 2 cut(s) 250, 415
SpeI ACTAGT 2 cut(s) 148, 257
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 10, 434
SsiI CCGC 6 cut(s) 22, 40, 181, 335, 430, 626
SspMI CTAG 4 cut(s) 149, 170, 258, 471
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 128
TasI AATT 2 cut(s) 10, 434
TatI WGTACW 2 cut(s) 218, 266
TauI GCSGC 2 cut(s) 42, 337
TfiI GAWTC 2 cut(s) 125, 533
Tru1I TTAA 3 cut(s) 153, 303, 345
Tru9I TTAA 3 cut(s) 153, 303, 345
TscAI CASTG 2 cut(s) 69, 376
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 374
TspRI CASTG 2 cut(s) 69, 376
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 4 cut(s) 149, 170, 258, 471
ZrmI AGTACT 2 cut(s) 220, 268
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.