Prupe.2G277500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017367
Physical Location & Seq
Forward (+)
27843267 .. 27845297
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G277500.1

Sequence Viewer

Length: 522 bp
ATGTCTTCTCTTTTCTTGATCTTTCTTCTGTGTCTGTCCATGCATGCATGTGAGGCTCGCTATATTGGGCTTGGCCATAAGGGTTTTGGTGCGTCACTCCAGCAGTCTGGCAAGGGTGTGTTGCTGGTTGTGGAAAAGTTTAGGCTTGGAATGGATTCAACTGGAGGATCAGTTAAGAAGGAAGATGGTGCAGCTGAAAAGGGTCATGGTGCAATCATTCAAGACTCAATGACTAGAGCTACAAAGGGACTGAAGTTCACAAGCAGAGCACAAAAATCAGGGATGGAAAAGGCCGGAGGTGATCAGATTGTAGAGTCTTCTGGTCATCACATGGGTTTGCTTAAAGCAACAAGTACTACTACCACTAACAAGGAAGAAGCAAGGAGGAGGAGATCGGTGCTGCTATCTGTTAATAAAGAAGCCGTAGATTCCAAGAGTAATGACAAAGTAGAAAACAATGTGGTGTTTACAGATTATAACCCACCACATCAGACACCGCCCATTCACAACAAAAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.73

Weight (kDa)

9.63

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017367)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27580
malus_domestica MD07G1254200.v1.1
prunus_persica Prupe.2G277500_v2.0.a1
pyrus_communis pycom01g19360
rosa_laevigata RLG00000026737
rosa_roxburghii Rroxscaffold_4G00283480
rosa_rugosa Rorug01G0383000 Rorug01G0383100.1
rosa_samantha Rh1AG394000 Rh1BG358600 Rh1CG371600 Rh1DG389200
rosa_wichuraiana Rw1G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 1 cut(s) 355
AgsI TTSAA 2 cut(s) 159, 221
AluBI AGCT 2 cut(s) 194, 239
AluI AGCT 2 cut(s) 194, 239
Alw21I GWGCWC 1 cut(s) 271
AlwI GGATC 1 cut(s) 175
AoxI GGCC 2 cut(s) 73, 291
ApeKI GCWGC 2 cut(s) 191, 400
Asp700I GAANNNNTTC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 311
BalI TGGCCA 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 203, 387
BccI CCATC 2 cut(s) 179, 277
BceAI ACGGC 1 cut(s) 407
BclI TGATCA 1 cut(s) 301
BfaI CTAG 1 cut(s) 234
BisI GCNGC 2 cut(s) 192, 401
BlsI GCNGC 2 cut(s) 193, 402
BmcAI AGTACT 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 2 cut(s) 83, 183
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 400, 403
BseXI GCAGC 2 cut(s) 203, 387
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 2 cut(s) 75, 293
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 2 cut(s) 75, 293
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 4 cut(s) 18, 167, 301, 392
BspACI CCGC 1 cut(s) 497
BspANI GGCC 2 cut(s) 75, 293
BspPI GGATC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 166
BssMI GATC 4 cut(s) 18, 167, 301, 392
BstC8I GCNNGC 2 cut(s) 45, 58
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 4 cut(s) 21, 170, 304, 395
BstMBI GATC 4 cut(s) 18, 167, 301, 392
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 47, 51
BstV1I GCAGC 2 cut(s) 203, 387
BstV2I GAAGAC 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuRI GGCC 2 cut(s) 75, 293
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 45, 58
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 354
CviAII CATG 5 cut(s) 40, 44, 48, 206, 331
CviJI RGCY 8 cut(s) 56, 70, 75, 145, 194, 239, 293, 422
CviKI_1 RGCY 8 cut(s) 56, 70, 75, 145, 194, 239, 293, 422
CviQI GTAC 1 cut(s) 354
DpnI GATC 4 cut(s) 20, 169, 303, 394
DpnII GATC 4 cut(s) 18, 167, 301, 392
EaeI YGGCCR 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 272
EcoT22I ATGCAT 2 cut(s) 45, 49
FaeI CATG 5 cut(s) 43, 47, 51, 209, 334
FaiI YATR 8 cut(s) 41, 45, 49, 63, 78, 207, 332, 477
FaqI GGGAC 1 cut(s) 261
FatI CATG 5 cut(s) 39, 43, 47, 205, 330
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 192, 401
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 192, 401
FspBI CTAG 1 cut(s) 234
GluI GCNGC 2 cut(s) 192, 401
GsuI CTGGAG 2 cut(s) 83, 183
HaeIII GGCC 2 cut(s) 75, 293
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 81
Hin1II CATG 5 cut(s) 43, 47, 51, 209, 334
HinfI GANTC 4 cut(s) 155, 224, 314, 428
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 258, 468
Hpy188I TCNGA 2 cut(s) 306, 492
Hpy188III TCNNGA 2 cut(s) 16, 221
Hpy8I GTNNAC 2 cut(s) 258, 468
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 43, 47, 191, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 5 cut(s) 43, 47, 51, 209, 334
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 18, 167, 301, 392
LpnPI CCDG 7 cut(s) 93, 110, 113, 147, 264, 306, 307
Lsp1109I GCAGC 2 cut(s) 203, 387
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 93
MalI GATC 4 cut(s) 20, 169, 303, 394
MboI GATC 4 cut(s) 18, 167, 301, 392
MboII GAAGA 4 cut(s) 17, 194, 309, 386
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 2 cut(s) 218, 323
MnlI CCTC 5 cut(s) 46, 158, 290, 378, 381
Mox20I TGGCCA 1 cut(s) 75
Mph1103I ATGCAT 2 cut(s) 45, 49
MroXI GAANNNNTTC 1 cut(s) 154
MscI TGGCCA 1 cut(s) 75
MseI TTAA 4 cut(s) 174, 342, 411, 520
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 4 cut(s) 18, 167, 301, 392
NlaIII CATG 5 cut(s) 43, 47, 51, 209, 334
NmuCI GTSAC 1 cut(s) 93
NsiI ATGCAT 2 cut(s) 45, 49
NspI RCATGY 2 cut(s) 47, 51
PaeI GCATGC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 155, 428
PkrI GCNGC 2 cut(s) 193, 402
PleI GAGTC 2 cut(s) 218, 322
PpsI GAGTC 2 cut(s) 218, 322
PsiI TTATAA 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 4 cut(s) 174, 342, 411, 520
SatI GCNGC 2 cut(s) 192, 401
Sau3AI GATC 4 cut(s) 18, 167, 301, 392
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 2 cut(s) 218, 323
SduI GDGCHC 1 cut(s) 271
SetI ASST 3 cut(s) 196, 241, 301
SmiMI CAYNNNNRTG 1 cut(s) 48
SphI GCATGC 1 cut(s) 47
SsiI CCGC 1 cut(s) 497
SspMI CTAG 1 cut(s) 234
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 2 cut(s) 155, 428
Tru1I TTAA 4 cut(s) 174, 342, 411, 520
Tru9I TTAA 4 cut(s) 174, 342, 411, 520
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 2 cut(s) 191, 400
Tsp45I GTSAC 1 cut(s) 93
XceI RCATGY 2 cut(s) 47, 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 2 cut(s) 45, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.