FvH4_7g27870

Pentatricopeptide repeat-containing protein At4g25270

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
20739793 .. 20741361
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27870.t1

Sequence Viewer

Length: 1569 bp
ATGGTGACCACGTTACAACCCTTGAATCTGCACACAACAAAACTCACTATCCACTGCTCCTCTAACAGCAAGAGAAGCAAGAACAAGCCTAAGCAGCAGCTTCACCAAAAGCAAAGCACCAAGCTCCTCTCTTTCTCAAACCCAACCCCAACCCCTCTCATTGTCTACCATAAACCCCAAACCCAAACCAAGCTCCAAGCCCTTGAAGCCATCATCAAAGAACTCGAAACGTCCAGTGAAAACGGCATAGACGTCGACACTGAAACCTTTGCTTCCCTTTTGGAAACATGTTACAAACTGGACGCCATGGATTACTGTCTAAGAGTCCATAGACTCATACCCAGAAATCTTTTACGTAGAAATGTAGGCCTCTCATCTAAGCTTCTTAGACTCTATGCGTCATGTGGGTTCGTTGAGGAAGCACACCAGGTGTTCGATGAAATGCCCAAGAGAGACGTTTCGGCTTTTGCTTGGAATTCACTTATATCTGGGTATGCTGAGTTGGGTTTGTATGAGGATGCTATGGCATTGTACTTTCAAATGGAGGAGGAGGGGGTTGAACCGGACCGGTTTACGTTCCCTCGGGTGTTGAAGGCTTGTGGGGGAATTGGGTTTGTTCAGGTTGGTGAGGCTGTGCATAGGCATTTGGTGCGTTTGGGGTTTGTTGGTGATAGGTTTGTGCTTAATGCATTGGTGGATATGTATGCTAAGTGTGGTGACATTGGGAAGGCTAGGAAGGTTTTTGATAAGATTGGTAGCAGGGACAAGGTTTCTTGGAACACAATGCTCACTGCTTATATGCGCCACGGGCTTTTGTTGCAGGCATTGGACATTTTTCACCAGATGGTGAAAGAAAGGTTCCAGCCGGACTCGGTTGCTATATCTGCAATTCTCAGTGAGGTGCCATCACTGGAGCTTGTTGTTCAAATTCATGGGTGGGCTATTCGGCAAGGAGTTGAGTGGAATTTGTCGACTGTCAATTCCTTGATTGCTGCATATTCCAATCATGGAAAGTTGAGGCAAGCTCGTCGGCTGTTTTGTCAAATGCCTGAGAAGGATGTGGTGACATGGAACACTATAATTTCAGCACATTCTAAAAGCAGAGAAGCTTTGGTGTACTTTGAACAGATGGAGAGTGCCGGTGCCTTGCCAGACGCTATCACATTTGTGTCGATGCTTTCGGTTTGTGCGCATTTGAGTTTGGTGAAGGATGGGGAGAGATTGTTTTCTATTATGAAAAACAGATACAGAATTAGCCCAATAATGGAACATTATGCTTGTATGGTGAATCTTTATGGAAGGGCAGGTTTAATTAAAGAAGCTTATGGTCTGATAATGGAAGGAATGGAGTTTGAGGCTGGTCCAACTGTGTGGGGTGCGTTGCTATATGCTTGCTACCTTTATGGGAATGCTGAGATTGGAGGGGTTGCAGCTGAAAGACTCTTCGACTTGGAGCCTGATAATGAATATAATTTTGAGCTTCTGATGAAGATTTACAGCAATGTGGGTAGACTGGATGATGTAGAGAGAGTAAGAATGATGATGGTGGATAGAGGATTGGACTCGTAG

Protein Analysis

523

Amino Acids

59.08

Weight (kDa)

6.74

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 155 - 200 6.1e-10 PPR repeat family
PPR PF01535 157 - 186 7.9e-08 PPR repeat
PPR_2 PF13041 255 - 299 6.5e-10 PPR repeat family
PPR PF01535 257 - 286 5.4e-07 PPR repeat
PPR_2 PF13041 352 - 398 3.3e-08 PPR repeat family
E_motif PF20431 468 - 519 1.7e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25270
fragaria_vesca FvH4_7g27870
malus_domestica MD00G1104900.v1.1
prunus_persica Prupe.2G280000_v2.0.a1
pyrus_communis pycom01g19550
rosa_chinensis RchiOBHm_Chr1g0374811
rosa_laevigata RLG00000026713
rosa_multiflora Rmu_co8506051.1_g000002 Rmu_sc0004947.1_g000023
rosa_roxburghii Rroxscaffold_4G00283250
rosa_rugosa Rorug01G0385000
rosa_samantha Rh1AG396500 Rh1BG360600 Rh1CG374000 Rh1DG391400
rosa_wichuraiana Rw1G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
Acc16I TGCGCA 1 cut(s) 1191
Acc36I ACCTGC 1 cut(s) 1295
AccB1I GGYRCC 2 cut(s) 901, 1142
AccI GTMKAC 4 cut(s) 165, 255, 971, 1510
AcsI RAATTY 3 cut(s) 475, 927, 964
AcyI GRCGYC 2 cut(s) 252, 303
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 2 cut(s) 533, 1118
AfiI CCNNNNNNNGG 1 cut(s) 1264
AflIII ACRYGT 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 567
AgsI TTSAA 7 cut(s) 25, 206, 539, 560, 592, 926, 1124
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 1166
Alw26I GTCTC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 94, 97, 992, 1430
ApoI RAATTY 3 cut(s) 475, 927, 964
AsiGI ACCGGT 1 cut(s) 567
AspLEI GCGC 2 cut(s) 804, 1192
AspS9I GGNCC 2 cut(s) 565, 1361
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 2 cut(s) 565, 1361
BanI GGYRCC 2 cut(s) 901, 1142
BbvI GCAGC 4 cut(s) 106, 109, 979, 1442
BccI CCATC 6 cut(s) 218, 838, 913, 1123, 1205, 1537
BceAI ACGGC 1 cut(s) 259
BcgI CGANNNNNNTGC 4 cut(s) 235, 269, 1010, 1044
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 1295
BisI GCNGC 4 cut(s) 95, 98, 993, 1431
BlsI GCNGC 4 cut(s) 96, 99, 994, 1432
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 565, 1361
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 565, 1361
BmiI GGNNCC 4 cut(s) 860, 903, 1144, 1455
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 508, 1164
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 356
BsaHI GRCGYC 2 cut(s) 252, 303
BsaJI CCNNGG 3 cut(s) 306, 581, 805
BsaWI WCCGGW 2 cut(s) 562, 567
BsaXI ACNNNNNCTCC 2 cut(s) 1208, 1238
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse118I RCCGGY 2 cut(s) 567, 1139
Bse1I ACTGG 4 cut(s) 234, 303, 915, 1518
Bse3DI GCAATG 1 cut(s) 1507
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 306, 581, 805
BseGI GGATG 4 cut(s) 523, 1063, 1216, 1522
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMI GCAATG 1 cut(s) 1507
BseMII CTCAG 4 cut(s) 489, 907, 1041, 1404
BseNI ACTGG 4 cut(s) 234, 303, 915, 1518
BseRI GAGGAG 4 cut(s) 49, 116, 560, 563
BseXI GCAGC 4 cut(s) 106, 109, 979, 1442
BsgI GTGCAG 1 cut(s) 14
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 901, 1142
BshTI ACCGGT 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 563, 568, 866, 1140
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 1 cut(s) 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 1414
BsnI GGCC 1 cut(s) 369
BsoBI CYCGRG 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 4 cut(s) 490, 906, 1042, 1405
BspLI GGNNCC 4 cut(s) 860, 903, 1144, 1455
BspMI ACCTGC 1 cut(s) 1295
BspT107I GGYRCC 2 cut(s) 901, 1142
BsrDI GCAATG 1 cut(s) 1507
BsrFI RCCGGY 2 cut(s) 567, 1139
BsrI ACTGG 4 cut(s) 234, 303, 915, 1518
BssAI RCCGGY 2 cut(s) 567, 1139
BssECI CCNNGG 3 cut(s) 306, 581, 805
BssNI GRCGYC 2 cut(s) 252, 303
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 317, 976, 1369
Bst6I CTCTTC 1 cut(s) 1448
BstACI GRCGYC 2 cut(s) 252, 303
BstAPI GCANNNNNTGC 1 cut(s) 649
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 822, 1023, 1393
BstDEI CTNAG 9 cut(s) 90, 320, 378, 386, 498, 708, 893, 1050, 1413
BstDSI CCRYGG 2 cut(s) 306, 805
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 4 cut(s) 523, 1063, 1216, 1522
BstHHI GCGC 2 cut(s) 804, 1192
BstMAI GTCTC 1 cut(s) 447
BstMWI GCNNNNNNNGC 7 cut(s) 75, 94, 206, 649, 808, 817, 884
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 426
BstSNI TACGTA 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 106, 109, 979, 1442
BstXI CCANNNNNNTGG 1 cut(s) 1371
BsuRI GGCC 1 cut(s) 369
BtgI CCRYGG 2 cut(s) 306, 805
BtsCI GGATG 4 cut(s) 523, 1063, 1216, 1522
BtsI GCAGTG 2 cut(s) 52, 789
BtsIMutI CAGTG 6 cut(s) 52, 241, 258, 789, 901, 908
BveI ACCTGC 1 cut(s) 1295
Cac8I GCNNGC 3 cut(s) 822, 1023, 1393
CfoI GCGC 2 cut(s) 804, 1192
Cfr10I RCCGGY 2 cut(s) 567, 1139
Cfr13I GGNCC 2 cut(s) 565, 1361
CpoI CGGWCCG 1 cut(s) 565
CseI GACGC 3 cut(s) 311, 387, 1163
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 2 cut(s) 532, 1117
CspAI ACCGGT 1 cut(s) 567
CspI CGGWCCG 1 cut(s) 565
CviAII CATG 6 cut(s) 288, 307, 402, 932, 1007, 1068
CviQI GTAC 2 cut(s) 532, 1117
DdeI CTNAG 9 cut(s) 90, 320, 378, 386, 498, 708, 893, 1050, 1413
DraIII CACNNNGTG 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 1448
EarI CTCTTC 1 cut(s) 1448
Eco105I TACGTA 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 565, 1361
Eco88I CYCGRG 1 cut(s) 582
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 6 cut(s) 291, 310, 405, 935, 1010, 1071
FaqI GGGAC 1 cut(s) 776
FatI CATG 6 cut(s) 287, 306, 401, 931, 1006, 1067
FblI GTMKAC 4 cut(s) 165, 255, 971, 1510
Fnu4HI GCNGC 4 cut(s) 95, 98, 993, 1431
FokI GGATG 4 cut(s) 530, 1070, 1223, 1529
Fsp4HI GCNGC 4 cut(s) 95, 98, 993, 1431
FspAI RTGCGCAY 1 cut(s) 1191
FspBI CTAG 1 cut(s) 732
FspI TGCGCA 1 cut(s) 1191
GlaI GCGC 2 cut(s) 803, 1191
GluI GCNGC 4 cut(s) 95, 98, 993, 1431
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 1 cut(s) 369
HapII CCGG 4 cut(s) 563, 568, 866, 1140
HgaI GACGC 3 cut(s) 311, 387, 1163
HhaI GCGC 2 cut(s) 804, 1192
Hin1I GRCGYC 2 cut(s) 252, 303
Hin1II CATG 6 cut(s) 291, 310, 405, 935, 1010, 1071
Hin6I GCGC 2 cut(s) 802, 1190
HinP1I GCGC 2 cut(s) 802, 1190
HincII GTYRAC 2 cut(s) 256, 972
HindII GTYRAC 2 cut(s) 256, 972
HindIII AAGCTT 3 cut(s) 380, 1107, 1320
HinfI GANTC 8 cut(s) 25, 324, 333, 390, 869, 1288, 1440, 1562
HpaII CCGG 4 cut(s) 563, 568, 866, 1140
Hpy166II GTNNAC 6 cut(s) 166, 256, 573, 972, 1117, 1511
Hpy188I TCNGA 2 cut(s) 1332, 1485
Hpy8I GTNNAC 6 cut(s) 166, 256, 573, 972, 1117, 1511
Hpy99I CGWCG 2 cut(s) 257, 1032
HpyAV CCTTC 7 cut(s) 586, 721, 730, 1048, 1201, 1293, 1334
HpyCH4III ACNGT 3 cut(s) 317, 976, 1369
HpyCH4IV ACGT 6 cut(s) 11, 230, 252, 355, 456, 575
HpyCH4V TGCA 7 cut(s) 31, 637, 689, 820, 887, 995, 1430
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 94, 206, 649, 808, 817, 884
HpyF3I CTNAG 9 cut(s) 90, 320, 378, 386, 498, 708, 893, 1050, 1413
HpySE526I ACGT 6 cut(s) 11, 230, 252, 355, 456, 575
Hsp92I GRCGYC 2 cut(s) 252, 303
Hsp92II CATG 6 cut(s) 291, 310, 405, 935, 1010, 1071
HspAI GCGC 2 cut(s) 802, 1190
LmnI GCTCC 5 cut(s) 62, 129, 198, 913, 1453
Lsp1109I GCAGC 4 cut(s) 106, 109, 979, 1442
LweI GCATC 2 cut(s) 508, 1164
MabI ACCWGGT 1 cut(s) 426
MaeI CTAG 1 cut(s) 732
MaeII ACGT 6 cut(s) 11, 230, 252, 355, 456, 575
MaeIII GTNAC 5 cut(s) 4, 12, 290, 716, 1063
MboII GAAGA 2 cut(s) 1435, 1501
MlyI GAGTC 6 cut(s) 327, 333, 384, 863, 1434, 1556
MmeI TCCRAC 1 cut(s) 1388
Mph1103I ATGCAT 1 cut(s) 691
MseI TTAA 3 cut(s) 684, 1310, 1314
MslI CAYNNNNRTG 1 cut(s) 1166
MspA1I CMGCKG 1 cut(s) 1433
MspI CCGG 4 cut(s) 563, 568, 866, 1140
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 1414
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 7 cut(s) 75, 94, 206, 649, 808, 817, 884
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 6 cut(s) 291, 310, 405, 935, 1010, 1071
NlaIV GGNNCC 4 cut(s) 860, 903, 1144, 1455
NmuCI GTSAC 3 cut(s) 4, 716, 1063
NsbI TGCGCA 1 cut(s) 1191
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 1166
PacI TTAATTAA 1 cut(s) 1314
PceI AGGCCT 1 cut(s) 369
PciI ACATGT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 1414
PfeI GAWTC 2 cut(s) 25, 1288
PinAI ACCGGT 1 cut(s) 567
PkrI GCNGC 4 cut(s) 96, 99, 994, 1432
PleI GAGTC 6 cut(s) 327, 332, 384, 863, 1434, 1556
PpsI GAGTC 6 cut(s) 327, 332, 384, 863, 1434, 1556
Ppu21I YACGTR 1 cut(s) 356
PscI ACATGT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 426
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 4 cut(s) 860, 903, 1144, 1455
PspPI GGNCC 2 cut(s) 565, 1361
PvuII CAGCTG 1 cut(s) 1433
RsaI GTAC 2 cut(s) 533, 1118
RsaNI GTAC 2 cut(s) 532, 1117
RseI CAYNNNNRTG 1 cut(s) 1166
Rsr2I CGGWCCG 1 cut(s) 565
RsrII CGGWCCG 1 cut(s) 565
SalI GTCGAC 2 cut(s) 254, 970
SaqAI TTAA 3 cut(s) 684, 1310, 1314
SatI GCNGC 4 cut(s) 95, 98, 993, 1431
Sau96I GGNCC 2 cut(s) 565, 1361
SchI GAGTC 6 cut(s) 327, 333, 384, 863, 1434, 1556
ScrFI CCNGG 1 cut(s) 428
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 2 cut(s) 508, 1164
SinI GGWCC 2 cut(s) 565, 1361
SmiMI CAYNNNNRTG 1 cut(s) 1166
SnaBI TACGTA 1 cut(s) 356
SseBI AGGCCT 1 cut(s) 369
SspMI CTAG 1 cut(s) 732
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 317, 976, 1369
TaiI ACGT 6 cut(s) 14, 233, 255, 358, 459, 578
TaqI TCGA 6 cut(s) 225, 255, 435, 971, 1172, 1446
TatI WGTACW 2 cut(s) 531, 1116
TfiI GAWTC 2 cut(s) 25, 1288
Tru1I TTAA 3 cut(s) 684, 1310, 1314
Tru9I TTAA 3 cut(s) 684, 1310, 1314
TscAI CASTG 6 cut(s) 59, 241, 265, 796, 901, 915
TseFI GTSAC 3 cut(s) 4, 716, 1063
TseI GCWGC 4 cut(s) 94, 97, 992, 1430
Tsp45I GTSAC 3 cut(s) 4, 716, 1063
TspDTI ATGAA 5 cut(s) 453, 920, 1250, 1479, 1502
TspRI CASTG 6 cut(s) 59, 241, 265, 796, 901, 915
VpaK11BI GGWCC 2 cut(s) 565, 1361
XapI RAATTY 3 cut(s) 475, 927, 964
XceI RCATGY 1 cut(s) 291
XmiI GTMKAC 4 cut(s) 165, 255, 971, 1510
XspI CTAG 1 cut(s) 732
ZraI GACGTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.